Species:

1. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189599] (1 PDB entry)

   • Domains for 3ong:

     1. Domain d3ongb_: 3ong B: [183192] automated match to d1kpsa_

     2. Domain d3ongd_: 3ong D: [183193] automated match to d1kpsa_

2. Entamoeba histolytica [TaxId:5759] [193761] (1 PDB entry)

   • Domain for 4gpr:

     • Domain d4gpra_: 4gpr A: [193762] automated match to d2oxqa_ complexed with co

3. Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [189937] (1 PDB entry)

   • Domain for 3rcz:

     • Domain d3rczb_: 3rcz B: [184883] automated match to d1a3sa_

4. Human (Homo sapiens) [TaxId:9606] [186848] (19 PDB entries)

   1. Domains for 1x23:

      1. Domain d1x23b_: 1x23 B: [121616] Other proteins in same PDB: d1x23a1 automated match to d1ur6a_

      2. Domain d1x23c_: 1x23 C: [121617] Other proteins in same PDB: d1x23a1 automated match to d1ur6a_

      3. Domain d1x23d_: 1x23 D: [121618] Other proteins in same PDB: d1x23a1 automated match to d1ur6a_

   2. Domains for 2c2v:

      1. Domain d2c2vb_: 2c2v B: [129686] Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_ automated match to d1j7db_

      2. Domain d2c2ve_: 2c2v E: [129688] Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_ automated match to d1j7db_

      3. Domain d2c2vf_: 2c2v F: [129689] Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_ automated match to d1j7da_

      4. Domain d2c2vh_: 2c2v H: [129690] Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_ automated match to d1j7db_

      5. Domain d2c2vi_: 2c2v I: [129691] Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_ automated match to d1j7da_

      6. Domain d2c2vk_: 2c2v K: [129692] Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_ automated match to d1j7db_

      7. Domain d2c2vl_: 2c2v L: [129693] Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_ automated match to d1j7da_

   3. Domains for 2c4o:

      1. Domain d2c4oa_: 2c4o A: [129838] automated match to d1ur6a_ complexed with gol, so4

      2. Domain d2c4ob_: 2c4o B: [129839] automated match to d1ur6a_ complexed with gol, so4

      3. Domain d2c4oc_: 2c4o C: [129840] automated match to d1ur6a_ complexed with gol, so4

      4. Domain d2c4od_: 2c4o D: [129841] automated match to d1ur6a_ complexed with gol, so4

   4. Domains for 2c4p:

      1. Domain d2c4pa_: 2c4p A: [163259] automated match to d1z2ua1

      2. Domain d2c4pb_: 2c4p B: [163260] automated match to d1z2ua1

   5. Domains for 2clw:

      1. Domain d2clwa_: 2clw A: [130596] automated match to d1ur6a_ complexed with gol, so4

      2. Domain d2clwb_: 2clw B: [130597] automated match to d1ur6a_ complexed with gol, so4

      3. Domain d2clwc_: 2clw C: [130598] automated match to d1ur6a_ complexed with gol, so4

      4. Domain d2clwd_: 2clw D: [130599] automated match to d1ur6a_ complexed with gol, so4

   6. Domains for 2cyx:

      1. Domain d2cyxa_: 2cyx A: [163514] automated match to d2ucza_

      2. Domain d2cyxb_: 2cyx B: [163515] automated match to d2ucza_

      3. Domain d2cyxc_: 2cyx C: [163516] automated match to d2ucza_

   7. Domains for 2qgx:

      1. Domain d2qgxa_: 2qgx A: [167587] automated match to d1zuoa1

      2. Domain d2qgxb_: 2qgx B: [167588] automated match to d1zuoa1

      3. Domain d2qgxc_: 2qgx C: [167589] automated match to d1zuoa1

      4. Domain d2qgxd_: 2qgx D: [167590] automated match to d1zuoa1

   8. Domains for 2yho:

      1. Domain d2yhob_: 2yho B: [170787] automated match to d1z2ua1 complexed with act, zn

      2. Domain d2yhod_: 2yho D: [170788] automated match to d1z2ua1 complexed with act, zn

      3. Domain d2yhof_: 2yho F: [170789] automated match to d1z2ua1 complexed with act, zn

      4. Domain d2yhoh_: 2yho H: [170790] automated match to d1z2ua1 complexed with act, zn

   9. Domain for 3a33:

      • Domain d3a33a_: 3a33 A: [171693] Other proteins in same PDB: d3a33b_ automated match to d1ur6a_ complexed with gol

   10. Domain for 3h8k:

       • Domain d3h8ka_: 3h8k A: [177322] automated match to d2ucza_

   11. Domain for 3hct:

       • Domain d3hctb_: 3hct B: [177394] automated match to d1j7db_ protein/DNA complex; complexed with zn

   12. Domains for 3hcu:

       1. Domain d3hcub_: 3hcu B: [177395] automated match to d1j7db_ protein/DNA complex; complexed with zn

       2. Domain d3hcud_: 3hcu D: [177396] automated match to d1j7db_ protein/DNA complex; complexed with zn

   13. Domains for 3ptf:

       1. Domain d3ptfa_: 3ptf A: [183968] Other proteins in same PDB: d3ptfc_, d3ptfd_ automated match to d1z2ua1

       2. Domain d3ptfb_: 3ptf B: [183969] Other proteins in same PDB: d3ptfc_, d3ptfd_ automated match to d1z2ua1

   14. Domain for 3rpg:

       • Domain d3rpga_: 3rpg A: [185091] automated match to d1x23a1 complexed with zn

   15. Domain for 3tgd:

       • Domain d3tgda_: 3tgd A: [196186] automated match to d2clwa_

   16. Domain for 3w31:

       • Domain d3w31b_: 3w31 B: [196731] automated match to d2c2vb_ complexed with iod

   17. Domain for 4ap4:

       • Domain d4ap4b_: 4ap4 B: [194914] Other proteins in same PDB: d4ap4c_, d4ap4f_ automated match to d2c4pb_ complexed with zn

   18. Domains for 4auq:

       1. Domain d4auqa_: 4auq A: [194819] Other proteins in same PDB: d4auqc_, d4auqf_ automated match to d3a33a_ complexed with zn

       2. Domain d4auqd_: 4auq D: [194817] Other proteins in same PDB: d4auqc_, d4auqf_ automated match to d3a33a_ complexed with zn

   19. Domain for 4dhj:

       • Domain d4dhjk_: 4dhj K: [196008] automated match to d2c2vb_

5. Leishmania major [TaxId:5664] [188133] (1 PDB entry)

   • Domains for 1yf9:

     1. Domain d1yf9b_: 1yf9 B: [123055] Other proteins in same PDB: d1yf9a1 automated match to d1yf9a1 complexed with cl

     2. Domain d1yf9c_: 1yf9 C: [123056] Other proteins in same PDB: d1yf9a1 automated match to d1yf9a1 complexed with cl

6. Mouse (Mus musculus) [TaxId:10090] [188773] (1 PDB entry)

   • Domains for 3fsh:

     1. Domain d3fsha_: 3fsh A: [176026] automated match to d2ucza_

     2. Domain d3fshb_: 3fsh B: [176027] automated match to d2ucza_

7. Nematode (Caenorhabditis elegans) [TaxId:6239] [186897] (1 PDB entry)

   • Domain for 1z3d:

     • Domain d1z3da_: 1z3d A: [124399] automated match to d1q34a_

8. Plasmodium falciparum [TaxId:36329] [187963] (3 PDB entries)

   1. Domain for 2onu:

      • Domain d2onua_: 2onu A: [166804] automated match to d1yh6b1 complexed with pg4

   2. Domain for 2r0j:

      • Domain d2r0ja_: 2r0j A: [167908] automated match to d1j7db_

   3. Domains for 3e95:

      1. Domain d3e95a_: 3e95 A: [174767] Other proteins in same PDB: d3e95c_ automated match to d1j7db_ complexed with unx

      2. Domain d3e95b_: 3e95 B: [174768] Other proteins in same PDB: d3e95c_ automated match to d1j7db_ complexed with unx

9. Saccharomyces cerevisiae [TaxId:559292] [197196] (1 PDB entry)

   • Domain for 4jqu:

     • Domain d4jqua_: 4jqu A: [197197] automated match to d2ucza_ complexed with btb, peg

10. Schizosaccharomyces pombe [TaxId:284812] [196618] (1 PDB entry)

    • Domain for 4ii2:

      • Domain d4ii2c_: 4ii2 C: [196619] Other proteins in same PDB: d4ii2b_ automated match to d1z2ua1 complexed with atp, edo, mg, pg0, so4

11. Zebrafish (Danio rerio) [TaxId:7955] [188346] (1 PDB entry)

    • Domains for 2oxq:

      1. Domain d2oxqa_: 2oxq A: [166912] automated match to d1ur6a_ complexed with cl

      2. Domain d2oxqb_: 2oxq B: [166913] automated match to d1ur6a_ complexed with cl

More info for Protein automated matches from d.20.1.1: UBC-related

Timeline for Protein automated matches from d.20.1.1: UBC-related:

• Protein automated matches from d.20.1.1: UBC-related first appeared in SCOPe 2.01
  
• Protein automated matches from d.20.1.1: UBC-related appears in SCOPe 2.03
  
• Protein automated matches from d.20.1.1: UBC-related appears in the current release, SCOPe 2.08