Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2164133Fold d.20: UBC-like [54494] (1 superfamily)
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. 2164134Superfamily d.20.1: UBC-like [54495] (5 families) (S)
  5. 2164135Family d.20.1.1: UBC-related [54496] (7 protein domains)
  6. 2164342Protein automated matches [190124] (12 species)
    not a true protein

Species:

  1. 2164343Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189599] (2 PDB entries)
    1. Domains for 3ong:
      1. 2164344Domain d3ongb1: 3ong B:1-157 [183192]
        Other proteins in same PDB: d3ongb2, d3ongd2
        automated match to d1kpsa_
      2. 2164345Domain d3ongd1: 3ong D:1-156 [183193]
        Other proteins in same PDB: d3ongb2, d3ongd2
        automated match to d1kpsa_
    2. Domain for 5ojw:
  2. 2164346Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [197196] (4 PDB entries)
    1. Domain for 4jqu:
    2. Domain for 4r62:
    3. Domain for 5aie:
    4. Domains for 5jne:
      1. 2277761Domain d5jneb1: 5jne B:1-156 [321062]
        Other proteins in same PDB: d5jneb2, d5jnec_, d5jned1, d5jned2, d5jneg_, d5jneh1, d5jneh2
        automated match to d1u9aa_
        complexed with 6ln, gol, zn
      2. 2277841Domain d5jnef_: 5jne F: [321142]
        Other proteins in same PDB: d5jneb2, d5jnec_, d5jned1, d5jned2, d5jneg_, d5jneh1, d5jneh2
        automated match to d1u9aa_
        complexed with 6ln, gol, zn
  3. 2164350Entamoeba (Entamoeba histolytica) [TaxId:5759] [193761] (1 PDB entry)
  4. 2164352Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [189937] (1 PDB entry)
  5. 2164354Human (Homo sapiens) [TaxId:9606] [186848] (46 PDB entries)
    1. Domains for 1x23:
      1. 2164361Domain d1x23b2: 1x23 B:1-147 [121616]
        Other proteins in same PDB: d1x23a1, d1x23a2, d1x23b3, d1x23c3, d1x23d3
        automated match to d1ur6a_
      2. 2164362Domain d1x23c2: 1x23 C:1-147 [121617]
        Other proteins in same PDB: d1x23a1, d1x23a2, d1x23b3, d1x23c3, d1x23d3
        automated match to d1ur6a_
      3. 2164363Domain d1x23d2: 1x23 D:1-147 [121618]
        Other proteins in same PDB: d1x23a1, d1x23a2, d1x23b3, d1x23c3, d1x23d3
        automated match to d1ur6a_
    2. Domains for 2c2v:
      1. 2164422Domain d2c2vb_: 2c2v B: [129686]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7db_
      2. 2164423Domain d2c2ve_: 2c2v E: [129688]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7db_
      3. 2164424Domain d2c2vf_: 2c2v F: [129689]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7da_
      4. 2164425Domain d2c2vh_: 2c2v H: [129690]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7db_
      5. 2164426Domain d2c2vi_: 2c2v I: [129691]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7da_
      6. 2164427Domain d2c2vk_: 2c2v K: [129692]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7db_
      7. 2164428Domain d2c2vl_: 2c2v L: [129693]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7da_
    3. Domains for 2c4o:
      1. 2164386Domain d2c4oa_: 2c4o A: [303632]
        automated match to d1x23d_
        complexed with gol, so4
      2. 2164387Domain d2c4ob_: 2c4o B: [303633]
        automated match to d1x23d_
        complexed with gol, so4
      3. 2164388Domain d2c4oc_: 2c4o C: [303634]
        automated match to d1x23d_
        complexed with gol, so4
      4. 2164389Domain d2c4od_: 2c4o D: [303635]
        automated match to d1x23d_
        complexed with gol, so4
    4. Domains for 2c4p:
      1. 2164399Domain d2c4pa_: 2c4p A: [163259]
        automated match to d1z2ua1
      2. 2164400Domain d2c4pb_: 2c4p B: [163260]
        automated match to d1z2ua1
    5. Domains for 2clw:
      1. 2164382Domain d2clwa_: 2clw A: [130596]
        automated match to d1ur6a_
        complexed with gol, so4
      2. 2164383Domain d2clwb_: 2clw B: [130597]
        automated match to d1ur6a_
        complexed with gol, so4
      3. 2164384Domain d2clwc_: 2clw C: [130598]
        automated match to d1ur6a_
        complexed with gol, so4
      4. 2164385Domain d2clwd_: 2clw D: [130599]
        automated match to d1ur6a_
        complexed with gol, so4
    6. Domains for 2cyx:
      1. 2164405Domain d2cyxa1: 2cyx A:1-165 [163514]
        Other proteins in same PDB: d2cyxa2, d2cyxb2, d2cyxc2
        automated match to d2ucza_
      2. 2164406Domain d2cyxb1: 2cyx B:1-165 [163515]
        Other proteins in same PDB: d2cyxa2, d2cyxb2, d2cyxc2
        automated match to d2ucza_
      3. 2164407Domain d2cyxc1: 2cyx C:1-165 [163516]
        Other proteins in same PDB: d2cyxa2, d2cyxb2, d2cyxc2
        automated match to d2ucza_
    7. Domain for 2fuh:
    8. Domain for 2kly:
    9. Domain for 2lxp:
    10. Domains for 2qgx:
      1. 2164377Domain d2qgxa_: 2qgx A: [167587]
        automated match to d1zuoa1
      2. 2164378Domain d2qgxb_: 2qgx B: [167588]
        automated match to d1zuoa1
      3. 2164379Domain d2qgxc_: 2qgx C: [167589]
        automated match to d1zuoa1
      4. 2164380Domain d2qgxd_: 2qgx D: [167590]
        automated match to d1zuoa1
    11. Domains for 2yho:
      1. 2164365Domain d2yhob1: 2yho B:1-147 [170787]
        Other proteins in same PDB: d2yhob2, d2yhod2, d2yhof2
        automated match to d1z2ua1
        complexed with act, zn
      2. 2164366Domain d2yhod1: 2yho D:1-147 [170788]
        Other proteins in same PDB: d2yhob2, d2yhod2, d2yhof2
        automated match to d1z2ua1
        complexed with act, zn
      3. 2164367Domain d2yhof1: 2yho F:1-147 [170789]
        Other proteins in same PDB: d2yhob2, d2yhod2, d2yhof2
        automated match to d1z2ua1
        complexed with act, zn
      4. 2164368Domain d2yhoh_: 2yho H: [170790]
        Other proteins in same PDB: d2yhob2, d2yhod2, d2yhof2
        automated match to d1z2ua1
        complexed with act, zn
    12. Domain for 3a33:
    13. Domain for 3h8k:
    14. Domain for 3hct:
    15. Domains for 3hcu:
      1. 2164408Domain d3hcub_: 3hcu B: [177395]
        automated match to d1j7db_
        protein/DNA complex; complexed with zn
      2. 2164409Domain d3hcud_: 3hcu D: [177396]
        automated match to d1j7db_
        protein/DNA complex; complexed with zn
    16. Domain for 3l1z:
    17. Domains for 3ptf:
      1. 2164396Domain d3ptfa1: 3ptf A:1-147 [183968]
        Other proteins in same PDB: d3ptfa2, d3ptfb2, d3ptfc_, d3ptfd1, d3ptfd2
        automated match to d1z2ua1
      2. 2164397Domain d3ptfb1: 3ptf B:1-147 [183969]
        Other proteins in same PDB: d3ptfa2, d3ptfb2, d3ptfc_, d3ptfd1, d3ptfd2
        automated match to d1z2ua1
    18. Domain for 3rpg:
    19. Domain for 3tgd:
    20. Domains for 3von:
      1. 2164410Domain d3vonc_: 3von C: [250627]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      2. 2164411Domain d3vone_: 3von E: [250629]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      3. 2164412Domain d3vong_: 3von G: [250631]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      4. 2164413Domain d3vonj_: 3von J: [250634]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      5. 2164414Domain d3vonl_: 3von L: [250636]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      6. 2164415Domain d3vonn_: 3von N: [250638]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      7. 2164416Domain d3vonq_: 3von Q: [250641]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      8. 2164417Domain d3vons_: 3von S: [250643]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      9. 2164418Domain d3vonu_: 3von U: [250645]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      10. 2164419Domain d3vonx_: 3von X: [250648]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      11. 2164420Domain d3vonz_: 3von Z: [250650]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
    21. Domains for 4ap4:
      1. 2164373Domain d4ap4b1: 4ap4 B:1-147 [194914]
        Other proteins in same PDB: d4ap4b2, d4ap4c_, d4ap4f_
        automated match to d2c4pb_
        complexed with zn
      2. 2164374Domain d4ap4e_: 4ap4 E: [201467]
        Other proteins in same PDB: d4ap4b2, d4ap4c_, d4ap4f_
        automated match to d4ap4b_
        complexed with zn
    22. Domains for 4auq:
      1. 2164375Domain d4auqa_: 4auq A: [194819]
        Other proteins in same PDB: d4auqc1, d4auqc2, d4auqf_
        automated match to d3a33a_
        complexed with zn
      2. 2164376Domain d4auqd_: 4auq D: [194817]
        Other proteins in same PDB: d4auqc1, d4auqc2, d4auqf_
        automated match to d3a33a_
        complexed with zn
    23. Domains for 4ccg:
      1. 2164401Domain d4ccga1: 4ccg A:1-153 [251362]
        Other proteins in same PDB: d4ccga2, d4ccgb2
        automated match to d1yh2a1
        complexed with cl, epe, gol, na, nh4, so4, zn
      2. 2164402Domain d4ccgb1: 4ccg B:1-152 [251363]
        Other proteins in same PDB: d4ccga2, d4ccgb2
        automated match to d1yh2a1
        complexed with cl, epe, gol, na, nh4, so4, zn
    24. Domain for 4lad:
    25. Domain for 4nr3:
    26. Domain for 4nrg:
    27. Domain for 4nri:
    28. Domain for 4onl:
    29. Domain for 4onm:
    30. Domain for 4onn:
    31. Domains for 4qpl:
      1. 2164370Domain d4qplb1: 4qpl B:1-147 [260380]
        Other proteins in same PDB: d4qplb2, d4qpld2
        automated match to d2yhob_
        complexed with v3l, zn
      2. 2164371Domain d4qpld1: 4qpl D:1-147 [260760]
        Other proteins in same PDB: d4qplb2, d4qpld2
        automated match to d2yhob_
        complexed with v3l, zn
    32. Domains for 4s3o:
      1. 2164392Domain d4s3oa1: 4s3o A:2-147 [274919]
        Other proteins in same PDB: d4s3oa2, d4s3od2
        automated match to d3rpga_
        complexed with zn
      2. 2164393Domain d4s3od1: 4s3o D:2-147 [274920]
        Other proteins in same PDB: d4s3oa2, d4s3od2
        automated match to d3rpga_
        complexed with zn
    33. Domains for 4v3k:
      1. 2164394Domain d4v3ka_: 4v3k A: [271275]
        Other proteins in same PDB: d4v3kb1, d4v3kb2, d4v3ke1, d4v3ke2
        automated match to d3a33a_
        complexed with cl, edo, zn
      2. 2164395Domain d4v3kd_: 4v3k D: [271277]
        Other proteins in same PDB: d4v3kb1, d4v3kb2, d4v3ke1, d4v3ke2
        automated match to d3a33a_
        complexed with cl, edo, zn
    34. Domain for 4v3l:
    35. Domains for 5aiu:
      1. 2164403Domain d5aiub_: 5aiu B: [274672]
        Other proteins in same PDB: d5aiuc_, d5aiuf_
        automated match to d3w31b_
        complexed with edo, zn
      2. 2164404Domain d5aiue_: 5aiu E: [274675]
        Other proteins in same PDB: d5aiuc_, d5aiuf_
        automated match to d3w31b_
        complexed with edo, zn
    36. Domains for 5bnb:
      1. 2269287Domain d5bnbc_: 5bnb C: [312593]
        Other proteins in same PDB: d5bnbe_, d5bnbf_, d5bnbg_, d5bnbi_
        automated match to d1zdna1
      2. 2269298Domain d5bnbb_: 5bnb B: [312604]
        Other proteins in same PDB: d5bnbe_, d5bnbf_, d5bnbg_, d5bnbi_
        automated match to d1zdna1
      3. 2269403Domain d5bnba_: 5bnb A: [312709]
        Other proteins in same PDB: d5bnbe_, d5bnbf_, d5bnbg_, d5bnbi_
        automated match to d1zdna1
    37. Domain for 5egg:
    38. Domains for 5fer:
      1. 2274133Domain d5ferb_: 5fer B: [317434]
        Other proteins in same PDB: d5ferc_, d5ferf_
        automated match to d2c4pa_
        complexed with zn
      2. 2274181Domain d5fere_: 5fer E: [317482]
        Other proteins in same PDB: d5ferc_, d5ferf_
        automated match to d2c4pa_
        complexed with zn
    39. Domain for 5fq2:
    40. Domain for 5ifr:
    41. Domains for 5mnj:
      1. 2291568Domain d5mnja_: 5mnj A: [334869]
        Other proteins in same PDB: d5mnjb_, d5mnjf_
        automated match to d2clwa_
        complexed with so4, zn
      2. 2291569Domain d5mnje_: 5mnj E: [334870]
        Other proteins in same PDB: d5mnjb_, d5mnjf_
        automated match to d2clwa_
        complexed with so4, zn
    42. Domain for 5tut:
    43. Domains for 5ulf:
      1. 2291897Domain d5ulfa1: 5ulf A:1-147 [335198]
        Other proteins in same PDB: d5ulfa2, d5ulfb_, d5ulfc2, d5ulfd_
        automated match to d2clwa_
        complexed with gol
      2. 2291915Domain d5ulfc1: 5ulf C:1-147 [335216]
        Other proteins in same PDB: d5ulfa2, d5ulfb_, d5ulfc2, d5ulfd_
        automated match to d2clwa_
        complexed with gol
    44. Domain for 5ulh:
    45. Domain for 5ulk:
    46. Domains for 5vzw:
      1. 2294298Domain d5vzwb_: 5vzw B: [337599]
        Other proteins in same PDB: d5vzwc1, d5vzwc2, d5vzwd1, d5vzwd2
        automated match to d2clwa_
        complexed with zn
      2. 2294433Domain d5vzwa_: 5vzw A: [337734]
        Other proteins in same PDB: d5vzwc1, d5vzwc2, d5vzwd1, d5vzwd2
        automated match to d2clwa_
        complexed with zn
  6. 2164432Leishmania major [TaxId:5664] [188133] (1 PDB entry)
  7. 2164435Mouse (Mus musculus) [TaxId:10090] [188773] (1 PDB entry)
  8. 2164438Nematode (Brugia malayi) [TaxId:6279] [226704] (1 PDB entry)
  9. 2164440Nematode (Caenorhabditis elegans) [TaxId:6239] [186897] (1 PDB entry)
  10. 2164442Plasmodium falciparum [TaxId:36329] [187963] (5 PDB entries)
    1. Domain for 2onu:
    2. Domain for 2r0j:
    3. Domains for 3e95:
      1. 2164452Domain d3e95a_: 3e95 A: [174767]
        Other proteins in same PDB: d3e95c_
        automated match to d1j7db_
        complexed with unx
      2. 2164453Domain d3e95b_: 3e95 B: [174768]
        Other proteins in same PDB: d3e95c_
        automated match to d1j7db_
        complexed with unx
    4. Domains for 4jue:
      1. 2164446Domain d4juea_: 4jue A: [224033]
        automated match to d3rczb_
      2. 2164447Domain d4jueb_: 4jue B: [224034]
        automated match to d3rczb_
      3. 2164448Domain d4juec_: 4jue C: [224035]
        automated match to d3rczb_
      4. 2164449Domain d4jued_: 4jue D: [224036]
        automated match to d3rczb_
    5. Domains for 4m1n:
      1. 2164443Domain d4m1na_: 4m1n A: [224810]
        Other proteins in same PDB: d4m1nb2
        automated match to d2grra_
        complexed with na
      2. 2164444Domain d4m1nb1: 4m1n B:2-159 [224811]
        Other proteins in same PDB: d4m1nb2
        automated match to d2grra_
        complexed with na
      3. 2164445Domain d4m1nc_: 4m1n C: [224812]
        Other proteins in same PDB: d4m1nb2
        automated match to d2grra_
        complexed with na
  11. 2164454Schizosaccharomyces pombe [TaxId:284812] [196618] (1 PDB entry)
  12. 2164456Zebrafish (Danio rerio) [TaxId:7955] [188346] (1 PDB entry)

More info for Protein automated matches from d.20.1.1: UBC-related

Timeline for Protein automated matches from d.20.1.1: UBC-related: