Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 3021034Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
  3. 3022990Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
    core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane
  4. 3022991Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families) (S)
    Pfam PF13853. Phylogeny described in PubMed 12761335
  5. 3022992Family f.13.1.1: Bacteriorhodopsin-like [81319] (6 proteins)
  6. 3023178Protein automated matches [190122] (8 species)
    not a true protein

Species:

  1. 3023179Halobacterium salinarium [TaxId:2242] [188662] (3 PDB entries)
    1. Domain for 2jaf:
    2. Domain for 2jag:
    3. Domain for 2zfe:
  2. 3023183Halobacterium salinarum [TaxId:2242] [186845] (18 PDB entries)
    1. Domain for 1x0i:
    2. Domain for 1x0k:
    3. Domain for 1x0s:
    4. Domain for 1xji:
    5. Domain for 2i1x:
    6. Domain for 2i20:
    7. Domain for 2i21:
    8. Domain for 2zzl:
    9. Domain for 3mbv:
    10. Domain for 3ns0:
    11. Domain for 3nsb:
    12. Domains for 4hwl:
      1. 3023185Domain d4hwla_: 4hwl A: [192665]
        automated match to d1r84a_
        complexed with gol, hex, hp6, ret
      2. 3023186Domain d4hwlb_: 4hwl B: [192667]
        automated match to d1r84a_
        complexed with gol, hex, hp6, ret
    13. Domains for 4hyx:
      1. 3023188Domain d4hyxa_: 4hyx A: [192664]
        automated match to d1r84a_
        complexed with c14, d10, gol, hex, oct, ret
      2. 3023189Domain d4hyxb_: 4hyx B: [192666]
        automated match to d1r84a_
        complexed with c14, d10, gol, hex, oct, ret
    14. Domain for 5ahy:
    15. Domain for 5ahz:
    16. Domain for 5g36:
    17. Domain for 7z0d:
    18. Domain for 7z0e:
  3. 3023202Halobacterium salinarum [TaxId:478009] [311987] (1 PDB entry)
  4. 3023204Halobacterium salinarum [TaxId:64091] [270103] (7 PDB entries)
    1. Domain for 4x31:
    2. Domain for 5zil:
    3. Domain for 6rmk:
    4. Domain for 6rnj:
    5. Domain for 6rph:
    6. Domain for 6rqo:
    7. Domain for 6rqp:
  5. 3023212Halobacterium sp. [TaxId:29285] [188058] (3 PDB entries)
    1. Domains for 1vgo:
      1. 3023214Domain d1vgoa_: 1vgo A: [161863]
        automated match to d1uaza_
        complexed with bng, ret, so4
      2. 3023215Domain d1vgob_: 1vgo B: [161864]
        automated match to d1uaza_
        complexed with bng, ret, so4
    2. Domain for 2ei4:
    3. Domains for 2z55:
      1. 3023216Domain d2z55a_: 2z55 A: [171054]
        automated match to d1uaza_
        complexed with 22b, l2p, ret
      2. 3023217Domain d2z55b_: 2z55 B: [171055]
        automated match to d1uaza_
        complexed with 22b, l2p, ret
      3. 3023218Domain d2z55d_: 2z55 D: [171056]
        automated match to d1uaza_
        complexed with 22b, l2p, ret
      4. 3023219Domain d2z55e_: 2z55 E: [171057]
        automated match to d1uaza_
        complexed with 22b, l2p, ret
  6. 3023220Halobacterium sp. [TaxId:64091] [193950] (1 PDB entry)
  7. 3023222Halorubrum sodomense [TaxId:35743] [375306] (5 PDB entries)
    1. Domain for 6gux:
    2. Domain for 6guy:
    3. Domain for 6guz:
    4. Domain for 6s63:
    5. Domain for 6s6c:
  8. 3023228Nostoc sp. [TaxId:103690] [258526] (1 PDB entry)

More info for Protein automated matches from f.13.1.1: Bacteriorhodopsin-like

Timeline for Protein automated matches from f.13.1.1: Bacteriorhodopsin-like: