Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.20: UBC-like [54494] (1 superfamily)
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. Superfamily d.20.1: UBC-like [54495] (5 families) (S)
  5. Family d.20.1.0: automated matches [191322] (1 protein)
    not a true family
  6. Protein automated matches [190120] (9 species)
    not a true protein

Species:

  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226239] (1 PDB entry)
  2. Cow (Bos taurus) [TaxId:9913] [186972] (1 PDB entry)
  3. Human (Homo sapiens) [TaxId:9606] [186843] (27 PDB entries)
    1. Domain for 1wzv:
    2. Domain for 1wzw:
    3. Domain for 1zdn:
    4. Domain for 2ebk:
    5. Domain for 2ebm:
    6. Domain for 2edi:
    7. Domain for 2ob4:
    8. Domain for 3fn1:
    9. Domains for 3rz3:
      1. Domain d3rz3a1: 3rz3 A:7-183 [216129]
        Other proteins in same PDB: d3rz3a2, d3rz3b2
        automated match to d2cyxa_
        complexed with u94
      2. Domain d3rz3b1: 3rz3 B:7-183 [216130]
        Other proteins in same PDB: d3rz3a2, d3rz3b2
        automated match to d2cyxa_
        complexed with u94
      3. Domain d3rz3c_: 3rz3 C: [216131]
        Other proteins in same PDB: d3rz3a2, d3rz3b2
        automated match to d2cyxa_
        complexed with u94
      4. Domain d3rz3d_: 3rz3 D: [216132]
        Other proteins in same PDB: d3rz3a2, d3rz3b2
        automated match to d2cyxa_
        complexed with u94
    10. Domain for 4ip3:
    11. Domains for 4mdk:
      1. Domain d4mdka_: 4mdk A: [229757]
        Other proteins in same PDB: d4mdke1, d4mdke2, d4mdkf1, d4mdkf2, d4mdkg_, d4mdkh1, d4mdkh2
        automated match to d2ob4a_
        complexed with u94
      2. Domain d4mdkb_: 4mdk B: [229680]
        Other proteins in same PDB: d4mdke1, d4mdke2, d4mdkf1, d4mdkf2, d4mdkg_, d4mdkh1, d4mdkh2
        automated match to d2ob4a_
        complexed with u94
      3. Domain d4mdkc_: 4mdk C: [229685]
        Other proteins in same PDB: d4mdke1, d4mdke2, d4mdkf1, d4mdkf2, d4mdkg_, d4mdkh1, d4mdkh2
        automated match to d2ob4a_
        complexed with u94
      4. Domain d4mdkd_: 4mdk D: [229681]
        Other proteins in same PDB: d4mdke1, d4mdke2, d4mdkf1, d4mdkf2, d4mdkg_, d4mdkh1, d4mdkh2
        automated match to d2ob4a_
        complexed with u94
    12. Domain for 4q5e:
    13. Domain for 4q5h:
    14. Domain for 4w5v:
    15. Domain for 4y1l:
    16. Domain for 4yii:
    17. Domains for 5hpt:
      1. Domain d5hptc_: 5hpt C: [314917]
        Other proteins in same PDB: d5hpta_, d5hptb_, d5hptd_, d5hpte_, d5hptg_, d5hpth_
        automated match to d2e2ca_
      2. Domain d5hptf_: 5hpt F: [314794]
        Other proteins in same PDB: d5hpta_, d5hptb_, d5hptd_, d5hpte_, d5hptg_, d5hpth_
        automated match to d2e2ca_
    18. Domain for 5lbn:
    19. Domain for 5ngz:
    20. Domains for 5ojj:
      1. Domain d5ojja_: 5ojj A: [339859]
        automated match to d1qcqa_
        complexed with act, trs, zn
      2. Domain d5ojjb_: 5ojj B: [339877]
        automated match to d1qcqa_
        complexed with act, trs, zn
      3. Domain d5ojjc_: 5ojj C: [339836]
        automated match to d1qcqa_
        complexed with act, trs, zn
      4. Domain d5ojjd_: 5ojj D: [339833]
        automated match to d1qcqa_
        complexed with act, trs, zn
      5. Domain d5ojje_: 5ojj E: [339842]
        automated match to d1qcqa_
        complexed with act, trs, zn
      6. Domain d5ojjf_: 5ojj F: [339852]
        automated match to d1qcqa_
        complexed with act, trs, zn
    21. Domain for 6cp2:
    22. Domains for 6fga:
      1. Domain d6fgai_: 6fga I: [369825]
        automated match to d3fn1b_
        complexed with gol, zn
      2. Domain d6fgaj_: 6fga J: [369831]
        automated match to d3fn1b_
        complexed with gol, zn
      3. Domain d6fgak_: 6fga K: [369826]
        automated match to d3fn1b_
        complexed with gol, zn
      4. Domain d6fgal_: 6fga L: [369824]
        automated match to d3fn1b_
        complexed with gol, zn
      5. Domain d6fgam_: 6fga M: [369823]
        automated match to d3fn1b_
        complexed with gol, zn
      6. Domain d6fgan_: 6fga N: [369840]
        automated match to d3fn1b_
        complexed with gol, zn
      7. Domain d6fgao_: 6fga O: [369842]
        automated match to d3fn1b_
        complexed with gol, zn
    23. Domain for 6n13:
    24. Domains for 6nya:
      1. Domain d6nyac_: 6nya C: [372602]
        Other proteins in same PDB: d6nyab1, d6nyab2, d6nyae1, d6nyae2
        automated match to d3fn1b_
        complexed with atp, edo, mg, so4
      2. Domain d6nyaf_: 6nya F: [372668]
        Other proteins in same PDB: d6nyab1, d6nyab2, d6nyae1, d6nyae2
        automated match to d3fn1b_
        complexed with atp, edo, mg, so4
    25. Domain for 6nyo:
    26. Domain for 6r75:
    27. Domain for 6xxu:
  4. Plasmodium falciparum [TaxId:36329] [187332] (2 PDB entries)
    1. Domain for 2q0v:
    2. Domain for 3e95:
  5. Plasmodium yoelii [TaxId:5861] [255550] (1 PDB entry)
  6. Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [372599] (1 PDB entry)
  7. Schizosaccharomyces pombe [TaxId:284812] [329787] (1 PDB entry)
  8. Thale cress (Arabidopsis thaliana) [TaxId:3702] [311631] (1 PDB entry)
  9. Trypanosoma cruzi [TaxId:5693] [234333] (1 PDB entry)

More info for Protein automated matches from d.20.1.0: automated matches

Timeline for Protein automated matches from d.20.1.0: automated matches: