SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
Superfamily d.15.1: Ubiquitin-like [54236] (9 families)
Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
Pfam PF00240
Protein automated matches [190118] (10 species)
not a true protein

Species:

African clawed frog (Xenopus laevis) [TaxId:8355] [255337] (1 PDB entry)
- Domains for 2kde:
  1. Domain d2kdeb_: 2kde B: [242465]
    automated match to d4auqc_
  2. Domain d2kdec_: 2kde C: [242466]
    automated match to d4auqc_
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189675] (2 PDB entries)
1. Domain for 3olm:
  - Domain d3olmd_: 3olm D: [183142]
    automated match to d1otrb_
2. Domains for 3qht:
  1. Domain d3qhta_: 3qht A: [184386]
    Other proteins in same PDB: d3qhtc_, d3qhtd_
    automated match to d1euvb_
    complexed with gol
  2. Domain d3qhtb_: 3qht B: [184387]
    Other proteins in same PDB: d3qhtc_, d3qhtd_
    automated match to d1euvb_
    complexed with gol
Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [193751] (4 PDB entries)
1. Domain for 3v60:
  - Domain d3v60a_: 3v60 A: [217679]
    Other proteins in same PDB: d3v60b1, d3v60b2
    automated match to d3v62d_
    protein/DNA complex; complexed with so4
2. Domain for 3v61:
  - Domain d3v61a_: 3v61 A: [227346]
    Other proteins in same PDB: d3v61b1, d3v61b2
    automated match to d3v62d_
    protein/DNA complex; complexed with ba, neq
3. Domains for 3v62:
  1. Domain d3v62a_: 3v62 A: [201201]
    Other proteins in same PDB: d3v62b1, d3v62b2, d3v62e1, d3v62e2
    automated match to d3v62d_
    protein/DNA complex; complexed with neq, so4
  2. Domain d3v62d_: 3v62 D: [193752]
    Other proteins in same PDB: d3v62b1, d3v62b2, d3v62e1, d3v62e2
    automated match to d1euvb_
    protein/DNA complex; complexed with neq, so4
4. Domain for 4q5e:
  - Domain d4q5eb_: 4q5e B: [258313]
    Other proteins in same PDB: d4q5ec_
    automated match to d3rula_
Cow (Bos taurus) [TaxId:9913] [197078] (4 PDB entries)
1. Domain for 1v80:
  - Domain d1v80a_: 1v80 A: [119867]
    automated match to d4auqc_
2. Domain for 1v81:
  - Domain d1v81a_: 1v81 A: [119868]
    automated match to d4auqc_
3. Domains for 3h1u:
  1. Domain d3h1ua_: 3h1u A: [246462]
    automated match to d4auqc_
    complexed with cd
  2. Domain d3h1ub_: 3h1u B: [246463]
    automated match to d4auqc_
    complexed with cd
4. Domain for 4bbn:
  - Domain d4bbnf_: 4bbn F: [197079]
    Other proteins in same PDB: d4bbna_, d4bbnc_
    automated match to d3noba_
Entamoeba (Entamoeba histolytica) [TaxId:5759] [193323] (2 PDB entries)
1. Domains for 4gsw:
  1. Domain d4gswa_: 4gsw A: [193324]
    automated match to d3nheb_
    complexed with so4
  2. Domain d4gswb_: 4gsw B: [202298]
    automated match to d4gswa_
    complexed with so4
2. Domain for 4gu2:
  - Domain d4gu2a_: 4gu2 A: [222166]
    automated match to d4gswa_

Human (Homo sapiens) [TaxId:9606] [189560] (70 PDB entries)

Domain for 1wyw:
- Domain d1wywb_: 1wyw B: [121468]
  Other proteins in same PDB: d1wywa_
  automated match to d1a5r__
  complexed with cl, mg, na
Domain for 1xqq:
- Domain d1xqqa_: 1xqq A: [122240]
  automated match to d4auqc_
Domains for 1y8r:
1. Domain d1y8rc_: 1y8r C: [122761]
  automated match to d1a5r__
  complexed with atp, mg, zn
2. Domain d1y8rf_: 1y8r F: [122762]
  automated match to d1a5r__
  complexed with atp, mg, zn
Domain for 1z5s:
- Domain d1z5sb_: 1z5s B: [124492]
  Other proteins in same PDB: d1z5sa_, d1z5sc1
  automated match to d1y8rc_
Domain for 2awt:
- Domain d2awta_: 2awt A: [127475]
  automated match to d1wz0a1
Domains for 2bgf:
1. Domain d2bgfa_: 2bgf A: [128476]
  automated match to d4auqc_
2. Domain d2bgfb_: 2bgf B: [128477]
  automated match to d4auqc_
Domain for 2bkr:
- Domain d2bkrb_: 2bkr B: [128711]
  Other proteins in same PDB: d2bkra_
  automated match to d1nddb_
Domain for 2c9w:
- Domain d2c9wb_: 2c9w B: [130145]
  Other proteins in same PDB: d2c9wa1, d2c9wa2, d2c9wc_
  automated match to d1lm8b_
  complexed with ni, so4
Domain for 2d07:
- Domain d2d07b_: 2d07 B: [131063]
  Other proteins in same PDB: d2d07a_
  automated match to d1wm2a_
Domain for 2den:
- Domain d2denb_: 2den B: [131432]
  Other proteins in same PDB: d2dena_
  automated match to d4auqc_
Domains for 2g4d:
1. Domain d2g4db_: 2g4d B: [134590]
  Other proteins in same PDB: d2g4da1, d2g4dc_
  automated match to d1y8rc_
  mutant
2. Domain d2g4dd_: 2g4d D: [134591]
  Other proteins in same PDB: d2g4da1, d2g4dc_
  automated match to d1y8rc_
  mutant
Domains for 2gbj:
1. Domain d2gbja_: 2gbj A: [164626]
  automated match to d1aara_
  mutant
2. Domain d2gbjb_: 2gbj B: [164627]
  automated match to d1aara_
  mutant
Domains for 2gbk:
1. Domain d2gbka_: 2gbk A: [164628]
  automated match to d1aara_
  mutant
2. Domain d2gbkb_: 2gbk B: [164629]
  automated match to d1aara_
  mutant
3. Domain d2gbkc_: 2gbk C: [164630]
  automated match to d1aara_
  mutant
4. Domain d2gbkd_: 2gbk D: [164631]
  automated match to d1aara_
  mutant
Domains for 2gbm:
1. Domain d2gbma_: 2gbm A: [164632]
  automated match to d1aara_
  complexed with ars; mutant
2. Domain d2gbmb_: 2gbm B: [164633]
  automated match to d1aara_
  complexed with ars; mutant
3. Domain d2gbmc_: 2gbm C: [164634]
  automated match to d1aara_
  complexed with ars; mutant
4. Domain d2gbmd_: 2gbm D: [164635]
  automated match to d1aara_
  complexed with ars; mutant
Domain for 2gbn:
- Domain d2gbna_: 2gbn A: [164636]
  automated match to d1aara_
  mutant
Domains for 2gbr:
1. Domain d2gbra_: 2gbr A: [164637]
  automated match to d1aara_
  complexed with cd; mutant
2. Domain d2gbrb_: 2gbr B: [164638]
  automated match to d1aara_
  complexed with cd; mutant
3. Domain d2gbrc_: 2gbr C: [164639]
  automated match to d1aara_
  complexed with cd; mutant
Domains for 2io1:
1. Domain d2io1b_: 2io1 B: [137537]
  Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
  automated match to d1wm2a_
2. Domain d2io1d_: 2io1 D: [137538]
  Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
  automated match to d1wm2a_
3. Domain d2io1f_: 2io1 F: [137539]
  Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
  automated match to d1wm2a_
Domain for 2izv:
- Domain d2izvb_: 2izv B: [137828]
  Other proteins in same PDB: d2izva1, d2izva2, d2izvc_
  automated match to d1lm8b_
  complexed with cl, edo, na
Domain for 2jz3:
- Domain d2jz3b_: 2jz3 B: [148243]
  Other proteins in same PDB: d2jz3c_
  automated match to d3zrcg_
Domain for 2klg:
- Domain d2klga_: 2klg A: [242552]
  automated match to d4auqc_
Domain for 2kx3:
- Domain d2kx3a_: 2kx3 A: [242686]
  automated match to d1v5ta_
  mutant
Domain for 2l0t:
- Domain d2l0ta_: 2l0t A: [242726]
  Other proteins in same PDB: d2l0tb_
  automated match to d4auqc_
Domain for 2lgd:
- Domain d2lgda_: 2lgd A: [242874]
  automated match to d1v5ta_
Domain for 2lj5:
- Domain d2lj5a_: 2lj5 A: [242898]
  automated match to d4auqc_
Domain for 2m0x:
- Domain d2m0xa_: 2m0x A: [243068]
  automated match to d4auqc_
Domain for 2m17:
- Domain d2m17a_: 2m17 A: [243074]
  automated match to d1v5ta_
Domain for 2ma9:
- Domain d2ma9b_: 2ma9 B: [243156]
  Other proteins in same PDB: d2ma9c_
  automated match to d3zrcg_
Domain for 2mbb:
- Domain d2mbbb_: 2mbb B: [256417]
  automated match to d3nobh_
Domain for 2mjb:
- Domain d2mjba_: 2mjb A: [243191]
  automated match to d4auqc_
Domain for 2mor:
- Domain d2mora_: 2mor A: [256449]
  automated match to d4auqc_
Domain for 2nr2:
- Domain d2nr2a_: 2nr2 A: [138518]
  automated match to d4auqc_
Domains for 2o6v:
1. Domain d2o6vb_: 2o6v B: [138923]
  Other proteins in same PDB: d2o6va_, d2o6vc_, d2o6vd1, d2o6ve_, d2o6vg_, d2o6vh_
  automated match to d1aara_
  complexed with mes, so4
2. Domain d2o6vf_: 2o6v F: [138926]
  Other proteins in same PDB: d2o6va_, d2o6vc_, d2o6vd1, d2o6ve_, d2o6vg_, d2o6vh_
  automated match to d1aara_
  complexed with mes, so4
Domains for 2pe9:
1. Domain d2pe9a_: 2pe9 A: [149399]
  automated match to d4auqc_
2. Domain d2pe9b_: 2pe9 B: [149400]
  automated match to d4auqc_
Domains for 2pea:
1. Domain d2peaa_: 2pea A: [149401]
  automated match to d4auqc_
2. Domain d2peab_: 2pea B: [149402]
  automated match to d4auqc_
Domains for 2w9n:
1. Domain d2w9na1: 2w9n A:1-76 [244066]
  automated match to d4auqc_
  complexed with cl, zn
2. Domain d2w9na2: 2w9n A:77-149 [244067]
  automated match to d4auqc_
  complexed with cl, zn
Domain for 2wyq:
- Domain d2wyqa_: 2wyq A: [169703]
  automated match to d1p98a_
  complexed with so4
Domains for 2xk5:
1. Domain d2xk5a_: 2xk5 A: [244533]
  automated match to d4auqc_
  complexed with zn
2. Domain d2xk5b_: 2xk5 B: [244534]
  automated match to d4auqc_
  complexed with zn
Domains for 2y5b:
1. Domain d2y5bb1: 2y5b B:1-73 [239020]
  Other proteins in same PDB: d2y5ba_, d2y5be_
  automated match to d3nobh_
  complexed with so4, zn
2. Domain d2y5bb2: 2y5b B:76-152 [239021]
  Other proteins in same PDB: d2y5ba_, d2y5be_
  automated match to d3nobh_
  complexed with so4, zn
3. Domain d2y5bf1: 2y5b F:1-75 [239022]
  Other proteins in same PDB: d2y5ba_, d2y5be_
  automated match to d3nobh_
  complexed with so4, zn
4. Domain d2y5bf2: 2y5b F:76-152 [239023]
  Other proteins in same PDB: d2y5ba_, d2y5be_
  automated match to d3nobh_
  complexed with so4, zn
Domains for 2zcb:
1. Domain d2zcba_: 2zcb A: [154336]
  automated match to d1aara_
  complexed with zn
2. Domain d2zcbb_: 2zcb B: [161592]
  automated match to d1aara_
  complexed with zn
3. Domain d2zcbc_: 2zcb C: [161593]
  automated match to d1aara_
  complexed with zn
Domains for 2zvn:
1. Domain d2zvna1: 2zvn A:1-76 [244990]
  automated match to d4auqc_
2. Domain d2zvna2: 2zvn A:77-148 [244991]
  automated match to d4auqc_
3. Domain d2zvnc1: 2zvn C:0-76 [244992]
  automated match to d4auqc_
4. Domain d2zvnc2: 2zvn C:77-148 [244993]
  automated match to d4auqc_
5. Domain d2zvne1: 2zvn E:1-76 [244994]
  automated match to d4auqc_
6. Domain d2zvne2: 2zvn E:77-146 [244995]
  automated match to d4auqc_
7. Domain d2zvng1: 2zvn G:1-76 [244996]
  automated match to d4auqc_
8. Domain d2zvng2: 2zvn G:77-146 [244997]
  automated match to d4auqc_
Domains for 2zvo:
1. Domain d2zvoa1: 2zvo A:0-76 [244998]
  automated match to d4auqc_
2. Domain d2zvoa2: 2zvo A:77-148 [244999]
  automated match to d4auqc_
3. Domain d2zvog1: 2zvo G:1-76 [245000]
  automated match to d4auqc_
4. Domain d2zvog2: 2zvo G:77-146 [245001]
  automated match to d4auqc_
Domain for 3jsv:
- Domain d3jsva_: 3jsv A: [178793]
  Other proteins in same PDB: d3jsvb_
  automated match to d1aara_
Domain for 3k9p:
- Domain d3k9pb_: 3k9p B: [179217]
  Other proteins in same PDB: d3k9pa1, d3k9pa2
  automated match to d1aara_
Domains for 3nob:
1. Domain d3noba_: 3nob A: [182440]
  automated match to d1aara_
  complexed with so4
2. Domain d3nobb_: 3nob B: [182441]
  automated match to d1aara_
  complexed with so4
3. Domain d3nobc_: 3nob C: [182442]
  automated match to d1aara_
  complexed with so4
4. Domain d3nobd_: 3nob D: [182443]
  automated match to d1aara_
  complexed with so4
5. Domain d3nobe_: 3nob E: [182444]
  automated match to d1aara_
  complexed with so4
6. Domain d3nobf_: 3nob F: [182445]
  automated match to d1aara_
  complexed with so4
7. Domain d3nobg_: 3nob G: [182446]
  automated match to d1aara_
  complexed with so4
8. Domain d3nobh_: 3nob H: [182447]
  automated match to d1aara_
  complexed with so4
Domain for 3phd:
- Domain d3phdf_: 3phd F: [248503]
  automated match to d4auqc_
  complexed with zn
Domains for 3pse:
1. Domain d3pseb1: 3pse B:4-78 [233268]
  automated match to d1z2ma1
  complexed with 3cn, gol
2. Domain d3pseb2: 3pse B:79-156 [233269]
  automated match to d1z2ma2
  complexed with 3cn, gol
Domains for 3r66:
1. Domain d3r66c2: 3r66 C:79-154 [233411]
  Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c1, d3r66d1
  automated match to d1z2ma2
2. Domain d3r66d2: 3r66 D:79-154 [233412]
  Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c1, d3r66d1
  automated match to d1z2ma2
Domains for 3rt3:
1. Domain d3rt3b1: 3rt3 B:3-78 [233498]
  Other proteins in same PDB: d3rt3c_
  automated match to d1z2ma1
  complexed with sin
2. Domain d3rt3b2: 3rt3 B:79-155 [233499]
  Other proteins in same PDB: d3rt3c_
  automated match to d1z2ma2
  complexed with sin
Domains for 3rzw:
1. Domain d3rzwc_: 3rzw C: [185230]
  Other proteins in same PDB: d3rzwa_, d3rzwb_
  automated match to d1a5ra_
  complexed with gol
2. Domain d3rzwd_: 3rzw D: [185231]
  Other proteins in same PDB: d3rzwa_, d3rzwb_
  automated match to d1a5ra_
  complexed with gol
Domains for 3sdl:
1. Domain d3sdlc2: 3sdl C:79-154 [239725]
  Other proteins in same PDB: d3sdla_, d3sdlb_, d3sdlc1, d3sdld1
  automated match to d3r66c2
2. Domain d3sdld2: 3sdl D:79-154 [239727]
  Other proteins in same PDB: d3sdla_, d3sdlb_, d3sdlc1, d3sdld1
  automated match to d3r66c2
Domain for 3uin:
- Domain d3uinb_: 3uin B: [200985]
  Other proteins in same PDB: d3uina_, d3uinc_
  automated match to d2io0b_
Domain for 3uio:
- Domain d3uiob_: 3uio B: [200986]
  Other proteins in same PDB: d3uioa_, d3uioc_
  automated match to d2io0b_
Domains for 3zkj:
1. Domain d3zkjc_: 3zkj C: [201328]
  Other proteins in same PDB: d3zkjb_, d3zkje_
  complexed with cl, edo, peg
2. Domain d3zkjf_: 3zkj F: [201330]
  Other proteins in same PDB: d3zkjb_, d3zkje_
  complexed with cl, edo, peg
Domains for 3znz:
1. Domain d3znzb1: 3znz B:1-76 [250808]
  automated match to d4auqc_
  complexed with so4
2. Domain d3znzb2: 3znz B:77-146 [250809]
  automated match to d4auqc_
  complexed with so4
Domain for 3zo5:
- Domain d3zo5b_: 3zo5 B: [236508]
  Other proteins in same PDB: d3zo5a_
  automated match to d2ckhb1
Domains for 4ap4:
1. Domain d4ap4c_: 4ap4 C: [194912]
  Other proteins in same PDB: d4ap4b_, d4ap4e_
  automated match to d3nobh_
  complexed with zn
2. Domain d4ap4f_: 4ap4 F: [194913]
  Other proteins in same PDB: d4ap4b_, d4ap4e_
  automated match to d3nobh_
  complexed with zn
Domains for 4auq:
1. Domain d4auqc_: 4auq C: [194816]
  Other proteins in same PDB: d4auqa_, d4auqd_
  automated match to d3nheb_
  complexed with zn
2. Domain d4auqf_: 4auq F: [194818]
  Other proteins in same PDB: d4auqa_, d4auqd_
  automated match to d3nheb_
  complexed with zn

Domain for 4b95:

Domain d4b95j_: 4b95 J: [193438]
Other proteins in same PDB: d4b95a_, d4b95b_, d4b95c_, d4b95d_, d4b95e_, d4b95f_, d4b95g_, d4b95h_, d4b95i_, d4b95k_, d4b95l_
automated match to d1lm8b_
complexed with act, uck

Domain for 4bkg:
- Domain d4bkga_: 4bkg A: [251272]
  automated match to d2io0b_
Domains for 4boz:
1. Domain d4bozb_: 4boz B: [251292]
  automated match to d4auqc_
  complexed with gol
2. Domain d4bozc_: 4boz C: [251293]
  automated match to d4auqc_
  complexed with gol
3. Domain d4boze_: 4boz E: [251294]
  automated match to d4auqc_
  complexed with gol
Domains for 4dwf:
1. Domain d4dwfa_: 4dwf A: [195743]
  automated match to d1wx9a1
  complexed with so4
2. Domain d4dwfb_: 4dwf B: [201746]
  automated match to d4dwfa_
  complexed with so4
Domains for 4eew:
1. Domain d4eewa_: 4eew A: [201835]
  automated match to d4eewb_
2. Domain d4eewb_: 4eew B: [195625]
  automated match to d1wx9a1
Domain for 4hjk:
- Domain d4hjka_: 4hjk A: [194297]
  automated match to d3nheb_
  complexed with po4
Domains for 4hk2:
1. Domain d4hk2a_: 4hk2 A: [202442]
  automated match to d4hk2c_
  complexed with so4
2. Domain d4hk2b_: 4hk2 B: [202443]
  automated match to d4hk2c_
  complexed with so4
3. Domain d4hk2c_: 4hk2 C: [193362]
  automated match to d3nobh_
  complexed with so4
4. Domain d4hk2d_: 4hk2 D: [202444]
  automated match to d4hk2c_
  complexed with so4
Domain for 4icu:
- Domain d4icua_: 4icu A: [256776]
  automated match to d1wjna_
Domain for 4k1r:
- Domain d4k1rb_: 4k1r B: [256832]
  automated match to d3dbhi_
  complexed with cl, edo, zn
Domain for 4pig:
- Domain d4pigd_: 4pig D: [260735]
  automated match to d4auqc_
  complexed with ca, cl, na; mutant
Domain for 4pih:
- Domain d4piha_: 4pih A: [260737]
  automated match to d4auqc_
  complexed with ca, cl; mutant
Domain for 4pij:
- Domain d4pija_: 4pij A: [260736]
  automated match to d3rula_
  complexed with gol, so4; mutant
Domain for 4wur:
- Domain d4wurb_: 4wur B: [261322]
  automated match to d4auqc_
  complexed with ipa, zn

Macaca fascicularis [TaxId:9541] [260502] (2 PDB entries)
1. Domain for 2mre:
  - Domain d2mrea_: 2mre A: [260505]
    automated match to d3dbhi_
    complexed with zn
2. Domain for 2mur:
  - Domain d2murb_: 2mur B: [261353]
    automated match to d2mrea_
    complexed with zn
Mouse (Mus musculus) [TaxId:10090] [187278] (3 PDB entries)
1. Domains for 2znv:
  1. Domain d2znvb_: 2znv B: [154707]
    Other proteins in same PDB: d2znvc_, d2znvf_
    automated match to d1aara_
    complexed with edo, zn
  2. Domain d2znve_: 2znv E: [154709]
    Other proteins in same PDB: d2znvc_, d2znvf_
    automated match to d1aara_
    complexed with edo, zn
2. Domain for 3b1l:
  - Domain d3b1lx_: 3b1l X: [195016]
    automated match to d2zeqa_
    mutant
3. Domain for 4jgh:
  - Domain d4jghb_: 4jgh B: [252933]
    Other proteins in same PDB: d4jgha1, d4jgha2, d4jghc_, d4jghd_
    automated match to d3zrcg_
Paramecium tetraurelia strain d4-2 [TaxId:412030] [161334] (1 PDB entry)
- Domain for 2jvc:
  - Domain d2jvca1: 2jvc A:6-76 [148222]
    automatically matched to d1yiwa1
Schizosaccharomyces pombe [TaxId:284812] [196615] (2 PDB entries)
1. Domain for 4ii2:
  - Domain d4ii2b_: 4ii2 B: [196616]
    Other proteins in same PDB: d4ii2c_
    automated match to d3cmmb_
    complexed with atp, edo, mg, pg0, so4
2. Domains for 4ii3:
  1. Domain d4ii3b_: 4ii3 B: [223182]
    automated match to d3dbhi_
    complexed with atp, ca, mg
  2. Domain d4ii3d_: 4ii3 D: [223183]
    automated match to d3dbhi_
    complexed with atp, ca, mg

More info for Protein automated matches from d.15.1.1: Ubiquitin-related

Timeline for Protein automated matches from d.15.1.1: Ubiquitin-related:

Protein automated matches from d.15.1.1: Ubiquitin-related first appeared in SCOPe 2.01
Protein automated matches from d.15.1.1: Ubiquitin-related appears in SCOPe 2.03
Protein automated matches from d.15.1.1: Ubiquitin-related appears in SCOPe 2.05
Protein automated matches from d.15.1.1: Ubiquitin-related appears in the current release, SCOPe 2.07