Species:

1. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189675] (2 PDB entries)

   1. Domain for 3olm:

      • Domain d3olmd_: 3olm D: [183142] automated match to d1otrb_

   2. Domains for 3qht:

      1. Domain d3qhta_: 3qht A: [184386] Other proteins in same PDB: d3qhtc_, d3qhtd_ automated match to d1euvb_ complexed with gol

      2. Domain d3qhtb_: 3qht B: [184387] Other proteins in same PDB: d3qhtc_, d3qhtd_ automated match to d1euvb_ complexed with gol

2. Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [193751] (3 PDB entries)

   1. Domain for 3v60:

      • Domain d3v60a_: 3v60 A: [217679] Other proteins in same PDB: d3v60b1, d3v60b2 automated match to d3v62d_ protein/DNA complex; complexed with so4

   2. Domain for 3v61:

      • Domain d3v61a_: 3v61 A: [227346] Other proteins in same PDB: d3v61b1, d3v61b2 automated match to d3v62d_ protein/DNA complex; complexed with ba, neq

   3. Domains for 3v62:

      1. Domain d3v62a_: 3v62 A: [201201] automated match to d3v62d_ protein/DNA complex; complexed with neq, so4

      2. Domain d3v62d_: 3v62 D: [193752] automated match to d1euvb_ protein/DNA complex; complexed with neq, so4

3. Cow (Bos taurus) [TaxId:9913] [197078] (1 PDB entry)

   • Domain for 4bbn:

     • Domain d4bbnf_: 4bbn F: [197079] Other proteins in same PDB: d4bbna_, d4bbnc_ automated match to d3noba_

4. Entamoeba (Entamoeba histolytica) [TaxId:5759] [193323] (2 PDB entries)

   1. Domains for 4gsw:

      1. Domain d4gswa_: 4gsw A: [193324] automated match to d3nheb_ complexed with so4

      2. Domain d4gswb_: 4gsw B: [202298] automated match to d4gswa_ complexed with so4

   2. Domain for 4gu2:

      • Domain d4gu2a_: 4gu2 A: [222166] automated match to d4gswa_

5. Human (Homo sapiens) [TaxId:9606] [189560] (36 PDB entries)

   1. Domain for 1wyw:

      • Domain d1wywb_: 1wyw B: [121468] Other proteins in same PDB: d1wywa1 automated match to d1a5r__ complexed with cl, mg, na

   2. Domains for 1y8r:

      1. Domain d1y8rc_: 1y8r C: [122761] automated match to d1a5r__ complexed with atp, mg, zn

      2. Domain d1y8rf_: 1y8r F: [122762] automated match to d1a5r__ complexed with atp, mg, zn

   3. Domain for 2bkr:

      • Domain d2bkrb_: 2bkr B: [128711] Other proteins in same PDB: d2bkra_ automated match to d1nddb_

   4. Domain for 2c9w:

      • Domain d2c9wb_: 2c9w B: [130145] Other proteins in same PDB: d2c9wa1, d2c9wa2, d2c9wc_ automated match to d1lm8b_ complexed with ni, so4

   5. Domain for 2d07:

      • Domain d2d07b_: 2d07 B: [131063] Other proteins in same PDB: d2d07a1 automated match to d1wm2a_

   6. Domains for 2g4d:

      1. Domain d2g4db_: 2g4d B: [134590] Other proteins in same PDB: d2g4da1, d2g4dc_ automated match to d1y8rc_ mutant

      2. Domain d2g4dd_: 2g4d D: [134591] Other proteins in same PDB: d2g4da1, d2g4dc_ automated match to d1y8rc_ mutant

   7. Domains for 2gbj:

      1. Domain d2gbja_: 2gbj A: [164626] automated match to d1aara_ mutant

      2. Domain d2gbjb_: 2gbj B: [164627] automated match to d1aara_ mutant

   8. Domains for 2gbk:

      1. Domain d2gbka_: 2gbk A: [164628] automated match to d1aara_ mutant

      2. Domain d2gbkb_: 2gbk B: [164629] automated match to d1aara_ mutant

      3. Domain d2gbkc_: 2gbk C: [164630] automated match to d1aara_ mutant

      4. Domain d2gbkd_: 2gbk D: [164631] automated match to d1aara_ mutant

   9. Domains for 2gbm:

      1. Domain d2gbma_: 2gbm A: [164632] automated match to d1aara_ complexed with ars; mutant

      2. Domain d2gbmb_: 2gbm B: [164633] automated match to d1aara_ complexed with ars; mutant

      3. Domain d2gbmc_: 2gbm C: [164634] automated match to d1aara_ complexed with ars; mutant

      4. Domain d2gbmd_: 2gbm D: [164635] automated match to d1aara_ complexed with ars; mutant

   10. Domain for 2gbn:

       • Domain d2gbna_: 2gbn A: [164636] automated match to d1aara_ mutant

   11. Domains for 2gbr:

       1. Domain d2gbra_: 2gbr A: [164637] automated match to d1aara_ complexed with cd; mutant

       2. Domain d2gbrb_: 2gbr B: [164638] automated match to d1aara_ complexed with cd; mutant

       3. Domain d2gbrc_: 2gbr C: [164639] automated match to d1aara_ complexed with cd; mutant

   12. Domains for 2io1:

       1. Domain d2io1b_: 2io1 B: [137537] Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_ automated match to d1wm2a_

       2. Domain d2io1d_: 2io1 D: [137538] Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_ automated match to d1wm2a_

       3. Domain d2io1f_: 2io1 F: [137539] Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_ automated match to d1wm2a_

   13. Domain for 2izv:

       • Domain d2izvb_: 2izv B: [137828] Other proteins in same PDB: d2izva1, d2izva2, d2izvc_ automated match to d1lm8b_ complexed with cl, edo, na

   14. Domains for 2o6v:

       1. Domain d2o6vb_: 2o6v B: [138923] Other proteins in same PDB: d2o6va_, d2o6vc_, d2o6vd1, d2o6ve_, d2o6vg_, d2o6vh_ automated match to d1aara_ complexed with mes, so4

       2. Domain d2o6vf_: 2o6v F: [138926] Other proteins in same PDB: d2o6va_, d2o6vc_, d2o6vd1, d2o6ve_, d2o6vg_, d2o6vh_ automated match to d1aara_ complexed with mes, so4

   15. Domain for 2wyq:

       • Domain d2wyqa_: 2wyq A: [169703] automated match to d1p98a_ complexed with so4

   16. Domains for 2zcb:

       1. Domain d2zcba_: 2zcb A: [154336] automated match to d1aara_ complexed with zn

       2. Domain d2zcbb_: 2zcb B: [161592] automated match to d1aara_ complexed with zn

       3. Domain d2zcbc_: 2zcb C: [161593] automated match to d1aara_ complexed with zn

   17. Domain for 3jsv:

       • Domain d3jsva_: 3jsv A: [178793] Other proteins in same PDB: d3jsvb_ automated match to d1aara_

   18. Domain for 3k9p:

       • Domain d3k9pb_: 3k9p B: [179217] Other proteins in same PDB: d3k9pa1, d3k9pa2 automated match to d1aara_

   19. Domains for 3nob:

       1. Domain d3noba_: 3nob A: [182440] automated match to d1aara_ complexed with so4

       2. Domain d3nobb_: 3nob B: [182441] automated match to d1aara_ complexed with so4

       3. Domain d3nobc_: 3nob C: [182442] automated match to d1aara_ complexed with so4

       4. Domain d3nobd_: 3nob D: [182443] automated match to d1aara_ complexed with so4

       5. Domain d3nobe_: 3nob E: [182444] automated match to d1aara_ complexed with so4

       6. Domain d3nobf_: 3nob F: [182445] automated match to d1aara_ complexed with so4

       7. Domain d3nobg_: 3nob G: [182446] automated match to d1aara_ complexed with so4

       8. Domain d3nobh_: 3nob H: [182447] automated match to d1aara_ complexed with so4

   20. Domains for 3pse:

       1. Domain d3pseb1: 3pse B:4-78 [233268] automated match to d1z2ma1 complexed with 3cn, gol

       2. Domain d3pseb2: 3pse B:79-156 [233269] automated match to d1z2ma2 complexed with 3cn, gol

   21. Domains for 3r66:

       1. Domain d3r66c2: 3r66 C:79-154 [233411] Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c1, d3r66d1 automated match to d1z2ma2

       2. Domain d3r66d2: 3r66 D:79-154 [233412] Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c1, d3r66d1 automated match to d1z2ma2

   22. Domains for 3rt3:

       1. Domain d3rt3b1: 3rt3 B:3-78 [233498] Other proteins in same PDB: d3rt3c_ automated match to d1z2ma1 complexed with sin

       2. Domain d3rt3b2: 3rt3 B:79-155 [233499] Other proteins in same PDB: d3rt3c_ automated match to d1z2ma2 complexed with sin

   23. Domains for 3rzw:

       1. Domain d3rzwc_: 3rzw C: [185230] Other proteins in same PDB: d3rzwa_ automated match to d1a5ra_ complexed with gol

       2. Domain d3rzwd_: 3rzw D: [185231] Other proteins in same PDB: d3rzwa_ automated match to d1a5ra_ complexed with gol

   24. Domain for 3uin:

       • Domain d3uinb_: 3uin B: [200985] Other proteins in same PDB: d3uina_, d3uinc_ automated match to d2io0b_

   25. Domain for 3uio:

       • Domain d3uiob_: 3uio B: [200986] Other proteins in same PDB: d3uioa_, d3uioc_ automated match to d2io0b_

   26. Domains for 3zkj:

       1. Domain d3zkjc_: 3zkj C: [201328] Other proteins in same PDB: d3zkjb_, d3zkje_ complexed with cl, edo, peg

       2. Domain d3zkjf_: 3zkj F: [201330] Other proteins in same PDB: d3zkjb_, d3zkje_ complexed with cl, edo, peg

   27. Domain for 3zo5:

       • Domain d3zo5b_: 3zo5 B: [236508] Other proteins in same PDB: d3zo5a_ automated match to d2ckhb1

   28. Domains for 4ap4:

       1. Domain d4ap4c_: 4ap4 C: [194912] Other proteins in same PDB: d4ap4b_, d4ap4e_ automated match to d3nobh_ complexed with zn

       2. Domain d4ap4f_: 4ap4 F: [194913] Other proteins in same PDB: d4ap4b_, d4ap4e_ automated match to d3nobh_ complexed with zn

   29. Domains for 4auq:

       1. Domain d4auqc_: 4auq C: [194816] Other proteins in same PDB: d4auqa_, d4auqd_ automated match to d3nheb_ complexed with zn

       2. Domain d4auqf_: 4auq F: [194818] Other proteins in same PDB: d4auqa_, d4auqd_ automated match to d3nheb_ complexed with zn

   30. Domain for 4b95:

       • Domain d4b95j_: 4b95 J: [193438] Other proteins in same PDB: d4b95a_, d4b95b_, d4b95c_, d4b95d_, d4b95e_, d4b95f_, d4b95g_, d4b95h_, d4b95i_, d4b95k_, d4b95l_ automated match to d1lm8b_ complexed with act, uck

   31. Domains for 4dwf:

       1. Domain d4dwfa_: 4dwf A: [195743] automated match to d1wx9a1 complexed with so4

       2. Domain d4dwfb_: 4dwf B: [201746] automated match to d4dwfa_ complexed with so4

   32. Domains for 4eew:

       1. Domain d4eewa_: 4eew A: [201835] automated match to d4eewb_

       2. Domain d4eewb_: 4eew B: [195625] automated match to d1wx9a1

   33. Domain for 4hcp:

       • Domain d4hcpb_: 4hcp B: [234640] automated match to d2bkrb_ complexed with gol, so4

   34. Domain for 4hjk:

       • Domain d4hjka_: 4hjk A: [194297] automated match to d3nheb_ complexed with po4

   35. Domains for 4hk2:

       1. Domain d4hk2a_: 4hk2 A: [202442] automated match to d4hk2c_ complexed with so4

       2. Domain d4hk2b_: 4hk2 B: [202443] automated match to d4hk2c_ complexed with so4

       3. Domain d4hk2c_: 4hk2 C: [193362] automated match to d3nobh_ complexed with so4

       4. Domain d4hk2d_: 4hk2 D: [202444] automated match to d4hk2c_ complexed with so4

   36. Domains for 4mdk:

       1. Domain d4mdke_: 4mdk E: [229684] Other proteins in same PDB: d4mdka_, d4mdkb_, d4mdkc_, d4mdkd_ automated match to d4ap4f_ complexed with u94

       2. Domain d4mdkf_: 4mdk F: [229679] Other proteins in same PDB: d4mdka_, d4mdkb_, d4mdkc_, d4mdkd_ automated match to d4ap4f_ complexed with u94

       3. Domain d4mdkg_: 4mdk G: [229683] Other proteins in same PDB: d4mdka_, d4mdkb_, d4mdkc_, d4mdkd_ automated match to d4ap4c_ complexed with u94

       4. Domain d4mdkh_: 4mdk H: [229682] Other proteins in same PDB: d4mdka_, d4mdkb_, d4mdkc_, d4mdkd_ automated match to d4ap4f_ complexed with u94

6. Mouse (Mus musculus) [TaxId:10090] [187278] (2 PDB entries)

   1. Domains for 2znv:

      1. Domain d2znvb_: 2znv B: [154707] Other proteins in same PDB: d2znvc_, d2znvf_ automated match to d1aara_ complexed with edo, zn

      2. Domain d2znve_: 2znv E: [154709] Other proteins in same PDB: d2znvc_, d2znvf_ automated match to d1aara_ complexed with edo, zn

   2. Domain for 3b1l:

      • Domain d3b1lx_: 3b1l X: [195016] automated match to d2zeqa_ mutant

7. Paramecium tetraurelia strain d4-2 [TaxId:412030] [161334] (1 PDB entry)

   • Domain for 2jvc:

     • Domain d2jvca1: 2jvc A:6-76 [148222] automatically matched to d1yiwa1

8. Schizosaccharomyces pombe [TaxId:284812] [196615] (2 PDB entries)

   1. Domain for 4ii2:

      • Domain d4ii2b_: 4ii2 B: [196616] Other proteins in same PDB: d4ii2c_ automated match to d3cmmb_ complexed with atp, edo, mg, pg0, so4

   2. Domains for 4ii3:

      1. Domain d4ii3b_: 4ii3 B: [223182] automated match to d3dbhi_ complexed with atp, ca, mg

      2. Domain d4ii3d_: 4ii3 D: [223183] automated match to d3dbhi_ complexed with atp, ca, mg

More info for Protein automated matches from d.15.1.1: Ubiquitin-related

Timeline for Protein automated matches from d.15.1.1: Ubiquitin-related:

• Protein automated matches from d.15.1.1: Ubiquitin-related first appeared in SCOPe 2.01
  
• Protein automated matches from d.15.1.1: Ubiquitin-related appears in SCOPe 2.02
  
• Protein automated matches from d.15.1.1: Ubiquitin-related appears in SCOPe 2.04
  
• Protein automated matches from d.15.1.1: Ubiquitin-related appears in the current release, SCOPe 2.08