Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 1013083Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1017615Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 1017616Superfamily d.15.1: Ubiquitin-like [54236] (9 families) (S)
  5. 1017617Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240
  6. 1018026Protein automated matches [190118] (3 species)
    not a true protein

Species:

  1. 1018027Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189675] (2 PDB entries)
    1. Domain for 3olm:
    2. Domains for 3qht:
      1. 1018029Domain d3qhta_: 3qht A: [184386]
        automated match to d1euvb_
        complexed with gol
      2. 1018030Domain d3qhtb_: 3qht B: [184387]
        automated match to d1euvb_
        complexed with gol
  2. 1018031Human (Homo sapiens) [TaxId:9606] [189560] (22 PDB entries)
    1. Domain for 1wyw:
    2. Domains for 1y8r:
      1. 1018074Domain d1y8rc_: 1y8r C: [122761]
        automated match to d1a5r__
        complexed with atp, mg, zn
      2. 1018075Domain d1y8rf_: 1y8r F: [122762]
        automated match to d1a5r__
        complexed with atp, mg, zn
    3. Domain for 2bkr:
    4. Domain for 2c9w:
    5. Domain for 2d07:
    6. Domains for 2gbj:
      1. 1018032Domain d2gbja_: 2gbj A: [164626]
        automated match to d1aara_
        mutant
      2. 1018033Domain d2gbjb_: 2gbj B: [164627]
        automated match to d1aara_
        mutant
    7. Domains for 2gbk:
      1. 1018050Domain d2gbka_: 2gbk A: [164628]
        automated match to d1aara_
        mutant
      2. 1018051Domain d2gbkb_: 2gbk B: [164629]
        automated match to d1aara_
        mutant
      3. 1018052Domain d2gbkc_: 2gbk C: [164630]
        automated match to d1aara_
        mutant
      4. 1018053Domain d2gbkd_: 2gbk D: [164631]
        automated match to d1aara_
        mutant
    8. Domains for 2gbm:
      1. 1018035Domain d2gbma_: 2gbm A: [164632]
        automated match to d1aara_
        complexed with ars; mutant
      2. 1018036Domain d2gbmb_: 2gbm B: [164633]
        automated match to d1aara_
        complexed with ars; mutant
      3. 1018037Domain d2gbmc_: 2gbm C: [164634]
        automated match to d1aara_
        complexed with ars; mutant
      4. 1018038Domain d2gbmd_: 2gbm D: [164635]
        automated match to d1aara_
        complexed with ars; mutant
    9. Domain for 2gbn:
    10. Domains for 2gbr:
      1. 1018047Domain d2gbra_: 2gbr A: [164637]
        automated match to d1aara_
        complexed with cd; mutant
      2. 1018048Domain d2gbrb_: 2gbr B: [164638]
        automated match to d1aara_
        complexed with cd; mutant
      3. 1018049Domain d2gbrc_: 2gbr C: [164639]
        automated match to d1aara_
        complexed with cd; mutant
    11. Domains for 2io1:
      1. 1018068Domain d2io1b_: 2io1 B: [137537]
        Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
        automated match to d1wm2a_
      2. 1018069Domain d2io1d_: 2io1 D: [137538]
        Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
        automated match to d1wm2a_
      3. 1018070Domain d2io1f_: 2io1 F: [137539]
        Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
        automated match to d1wm2a_
    12. Domain for 2izv:
    13. Domains for 2o6v:
      1. 1018064Domain d2o6vb_: 2o6v B: [138923]
        Other proteins in same PDB: d2o6va_, d2o6vc_, d2o6vd1, d2o6ve_, d2o6vg_, d2o6vh_
        automated match to d1aara_
        complexed with mes, so4
      2. 1018065Domain d2o6vf_: 2o6v F: [138926]
        Other proteins in same PDB: d2o6va_, d2o6vc_, d2o6vd1, d2o6ve_, d2o6vg_, d2o6vh_
        automated match to d1aara_
        complexed with mes, so4
    14. Domain for 2wyq:
    15. Domains for 2xai:
      1. 1018072Domain d2xaic_: 2xai C: [169981]
        Other proteins in same PDB: d2xaib_, d2xaie_
        automated match to d1lm8b_
        complexed with cl, edo, peg
      2. 1018073Domain d2xaif_: 2xai F: [169983]
        Other proteins in same PDB: d2xaib_, d2xaie_
        automated match to d1lm8b_
        complexed with cl, edo, peg
    16. Domains for 2zcb:
      1. 1018039Domain d2zcba_: 2zcb A: [154336]
        automated match to d1aara_
        complexed with zn
      2. 1018040Domain d2zcbb_: 2zcb B: [161592]
        automated match to d1aara_
        complexed with zn
      3. 1018041Domain d2zcbc_: 2zcb C: [161593]
        automated match to d1aara_
        complexed with zn
    17. Domain for 3jsv:
    18. Domain for 3k9p:
    19. Domain for 3kyc:
    20. Domain for 3kyd:
    21. Domains for 3nob:
      1. 1018056Domain d3noba_: 3nob A: [182440]
        automated match to d1aara_
        complexed with so4
      2. 1018057Domain d3nobb_: 3nob B: [182441]
        automated match to d1aara_
        complexed with so4
      3. 1018058Domain d3nobc_: 3nob C: [182442]
        automated match to d1aara_
        complexed with so4
      4. 1018059Domain d3nobd_: 3nob D: [182443]
        automated match to d1aara_
        complexed with so4
      5. 1018060Domain d3nobe_: 3nob E: [182444]
        automated match to d1aara_
        complexed with so4
      6. 1018061Domain d3nobf_: 3nob F: [182445]
        automated match to d1aara_
        complexed with so4
      7. 1018062Domain d3nobg_: 3nob G: [182446]
        automated match to d1aara_
        complexed with so4
      8. 1018063Domain d3nobh_: 3nob H: [182447]
        automated match to d1aara_
        complexed with so4
    22. Domains for 3rzw:
      1. 1018054Domain d3rzwc_: 3rzw C: [185230]
        automated match to d1a5ra_
        complexed with gol
      2. 1018055Domain d3rzwd_: 3rzw D: [185231]
        automated match to d1a5ra_
        complexed with gol
  3. 1018078Mouse (Mus musculus) [TaxId:10090] [187278] (1 PDB entry)

More info for Protein automated matches from d.15.1.1: Ubiquitin-related

Timeline for Protein automated matches from d.15.1.1: Ubiquitin-related: