Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1143363Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1143364Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1147695Superfamily c.1.10: Aldolase [51569] (9 families) (S)
    Common fold covers whole protein structure
  5. 1148735Family c.1.10.0: automated matches [191319] (1 protein)
    not a true family
  6. 1148736Protein automated matches [190115] (32 species)
    not a true protein

Species:

  1. 1148737Acinetobacter baumannii [TaxId:575584] [189578] (10 PDB entries)
    1. Domains for 3pud:
      1. 1148752Domain d3puda_: 3pud A: [183974]
        automated match to d1dhpa_
        complexed with gol, so4
      2. 1148753Domain d3pudb_: 3pud B: [183975]
        automated match to d1dhpa_
        complexed with gol, so4
    2. Domains for 3pue:
      1. 1148750Domain d3puea_: 3pue A: [183976]
        automated match to d1dhpa_
        complexed with gol, lys, so4
      2. 1148751Domain d3pueb_: 3pue B: [183977]
        automated match to d1dhpa_
        complexed with gol, lys, so4
    3. Domains for 3pul:
      1. 1148748Domain d3pula_: 3pul A: [183978]
        automated match to d1dhpa_
        complexed with act, gol, lys, so4
      2. 1148749Domain d3pulb_: 3pul B: [183979]
        automated match to d1dhpa_
        complexed with act, gol, lys, so4
    4. Domains for 3rk8:
      1. 1148739Domain d3rk8a_: 3rk8 A: [185001]
        automated match to d1dhpa_
        complexed with cl, gol, peg, pyr
      2. 1148740Domain d3rk8b_: 3rk8 B: [185002]
        automated match to d1dhpa_
        complexed with cl, gol, peg, pyr
    5. Domain for 3tak:
    6. Domain for 3tce:
    7. Domain for 3tdf:
    8. Domains for 3u8g:
      1. 1148743Domain d3u8ga_: 3u8g A: [186110]
        automated match to d1dhpa_
        complexed with oxl
      2. 1148744Domain d3u8gb_: 3u8g B: [186111]
        automated match to d1dhpa_
        complexed with oxl
    9. Domains for 3uqn:
      1. 1148745Domain d3uqna_: 3uqn A: [186374]
        automated match to d1dhpa_
        complexed with gol, oxm
      2. 1148746Domain d3uqnb_: 3uqn B: [186375]
        automated match to d1dhpa_
        complexed with gol, oxm
    10. Domains for 4dxv:
      1. 1148741Domain d4dxva_: 4dxv A: [192351]
        automated match to d3puda_
        complexed with cl, gol, mg
      2. 1148742Domain d4dxvb_: 4dxv B: [192352]
        automated match to d3puda_
        complexed with cl, gol, mg
  2. 1148755Agrobacterium tumefaciens [TaxId:176299] [188284] (1 PDB entry)
  3. 1148758Aquifex aeolicus [TaxId:63363] [187668] (1 PDB entry)
  4. 1148763Bacillus anthracis [TaxId:261594] [189622] (1 PDB entry)
  5. 1148766Bacillus clausii [TaxId:66692] [188586] (1 PDB entry)
  6. 1148769Bacillus subtilis [TaxId:1423] [193173] (1 PDB entry)
  7. 1148771Bartonella henselae [TaxId:38323] [189345] (1 PDB entry)
  8. 1148776Burkholderia ambifaria [TaxId:398577] [196224] (1 PDB entry)
  9. 1148778Burkholderia cenocepacia [TaxId:216591] [196152] (1 PDB entry)
  10. 1148780Campylobacter jejuni [TaxId:197] [189316] (1 PDB entry)
  11. 1148785Clostridium difficile [TaxId:272563] [189051] (2 PDB entries)
    1. Domains for 3js3:
      1. 1148787Domain d3js3a_: 3js3 A: [178750]
        automated match to d1gqna_
        complexed with dhs
      2. 1148788Domain d3js3b_: 3js3 B: [178751]
        automated match to d1gqna_
        complexed with dhs
      3. 1148789Domain d3js3c_: 3js3 C: [178752]
        automated match to d1gqna_
        complexed with dhs
      4. 1148790Domain d3js3d_: 3js3 D: [178753]
        automated match to d1gqna_
        complexed with dhs
    2. Domain for 4h3d:
  12. 1148791Francisella tularensis [TaxId:119856] [196145] (1 PDB entry)
  13. 1148793Francisella tularensis [TaxId:177416] [189018] (1 PDB entry)
  14. 1148796Geobacillus kaustophilus [TaxId:235909] [188221] (1 PDB entry)
  15. 1148799Giardia intestinalis [TaxId:5741] [187874] (6 PDB entries)
    1. Domains for 2isv:
      1. 1148806Domain d2isva_: 2isv A: [165680]
        automated match to d1rv8a_
        complexed with pgh, zn
      2. 1148807Domain d2isvb_: 2isv B: [165681]
        automated match to d1rv8a_
        complexed with pgh, zn
    2. Domains for 2isw:
      1. 1148800Domain d2iswa_: 2isw A: [165682]
        automated match to d1rv8a_
        complexed with pgh, zn
      2. 1148801Domain d2iswb_: 2isw B: [165683]
        automated match to d1rv8a_
        complexed with pgh, zn
    3. Domains for 3gak:
      1. 1148810Domain d3gaka_: 3gak A: [176479]
        automated match to d1rv8a_
        complexed with so4, zn
      2. 1148811Domain d3gakb_: 3gak B: [176480]
        automated match to d1rv8a_
        complexed with so4, zn
    4. Domains for 3gay:
      1. 1148802Domain d3gaya_: 3gay A: [176487]
        automated match to d1rv8a_
        complexed with p6t, zn
      2. 1148803Domain d3gayb_: 3gay B: [176488]
        automated match to d1rv8a_
        complexed with p6t, zn
    5. Domains for 3gb6:
      1. 1148804Domain d3gb6a_: 3gb6 A: [176490]
        automated match to d1rv8a_
        complexed with p6f, zn; mutant
      2. 1148805Domain d3gb6b_: 3gb6 B: [176491]
        automated match to d1rv8a_
        complexed with p6f, zn; mutant
    6. Domains for 3ohi:
      1. 1148808Domain d3ohia_: 3ohi A: [183027]
        automated match to d1rv8a_
        complexed with hdx, zn
      2. 1148809Domain d3ohib_: 3ohi B: [183028]
        automated match to d1rv8a_
        complexed with hdx, zn
  16. 1148812Hahella chejuensis [TaxId:158327] [188235] (1 PDB entry)
  17. 1148817Helicobacter pylori [TaxId:210] [188576] (3 PDB entries)
    1. Domains for 3c4u:
      1. 1148818Domain d3c4ua_: 3c4u A: [173042]
        automated match to d1rv8a_
        complexed with na, zn
      2. 1148819Domain d3c4ub_: 3c4u B: [173043]
        automated match to d1rv8a_
        complexed with na, zn
    2. Domains for 3c52:
      1. 1148822Domain d3c52a_: 3c52 A: [173044]
        automated match to d1rv8a_
        complexed with ca, na, pgh, zn
      2. 1148823Domain d3c52b_: 3c52 B: [173045]
        automated match to d1rv8a_
        complexed with ca, na, pgh, zn
    3. Domains for 3c56:
      1. 1148820Domain d3c56a_: 3c56 A: [173046]
        automated match to d1rv8a_
        complexed with ph4, zn
      2. 1148821Domain d3c56b_: 3c56 B: [173047]
        automated match to d1rv8a_
        complexed with ph4, zn
  18. 1148824Helicobacter pylori [TaxId:290847] [189516] (2 PDB entries)
    1. Domains for 3n9r:
      1. 1148825Domain d3n9ra_: 3n9r A: [182095]
        automated match to d1rv8a_
        complexed with cl, na, td3, zn
      2. 1148826Domain d3n9rb_: 3n9r B: [182096]
        automated match to d1rv8a_
        complexed with cl, na, td3, zn
      3. 1148827Domain d3n9re_: 3n9r e: [182097]
        automated match to d1rv8a_
        complexed with cl, na, td3, zn
      4. 1148828Domain d3n9rj_: 3n9r j: [182098]
        automated match to d1rv8a_
        complexed with cl, na, td3, zn
      5. 1148829Domain d3n9rk_: 3n9r K: [182099]
        automated match to d1rv8a_
        complexed with cl, na, td3, zn
      6. 1148830Domain d3n9rp_: 3n9r P: [182100]
        automated match to d1rv8a_
        complexed with cl, na, td3, zn
      7. 1148831Domain d3n9ru_: 3n9r U: [182101]
        automated match to d1rv8a_
        complexed with cl, na, td3, zn
      8. 1148832Domain d3n9rz_: 3n9r Z: [182102]
        automated match to d1rv8a_
        complexed with cl, na, td3, zn
    2. Domains for 3n9s:
      1. 1148833Domain d3n9sa_: 3n9s A: [182103]
        automated match to d1rv8a_
        complexed with ca, na, td4, zn
      2. 1148834Domain d3n9sb_: 3n9s B: [182104]
        automated match to d1rv8a_
        complexed with ca, na, td4, zn
  19. 1148835Human (Homo sapiens) [TaxId:9606] [189772] (2 PDB entries)
    1. Domain for 3s5n:
    2. Domain for 3s5o:
  20. 1148838Methanocaldococcus jannaschii [TaxId:2190] [188253] (3 PDB entries)
    1. Domains for 2qjg:
      1. 1148839Domain d2qjga_: 2qjg A: [167624]
        automated match to d1ojxa_
        complexed with f2p
      2. 1148840Domain d2qjgb_: 2qjg B: [167625]
        automated match to d1ojxa_
        complexed with f2p
      3. 1148841Domain d2qjgc_: 2qjg C: [167626]
        automated match to d1ojxa_
        complexed with f2p
      4. 1148842Domain d2qjgd_: 2qjg D: [167627]
        automated match to d1ojxa_
        complexed with f2p
      5. 1148843Domain d2qjge_: 2qjg E: [167628]
        automated match to d1ojxa_
        complexed with f2p
      6. 1148844Domain d2qjgf_: 2qjg F: [167629]
        automated match to d1ojxa_
        complexed with f2p
      7. 1148845Domain d2qjgg_: 2qjg G: [167630]
        automated match to d1ojxa_
        complexed with f2p
      8. 1148846Domain d2qjgh_: 2qjg H: [167631]
        automated match to d1ojxa_
        complexed with f2p
      9. 1148847Domain d2qjgi_: 2qjg I: [167632]
        automated match to d1ojxa_
        complexed with f2p
      10. 1148848Domain d2qjgj_: 2qjg J: [167633]
        automated match to d1ojxa_
        complexed with f2p
      11. 1148849Domain d2qjgk_: 2qjg K: [167634]
        automated match to d1ojxa_
        complexed with f2p
      12. 1148850Domain d2qjgl_: 2qjg L: [167635]
        automated match to d1ojxa_
        complexed with f2p
      13. 1148851Domain d2qjgm_: 2qjg M: [167636]
        automated match to d1ojxa_
        complexed with f2p
      14. 1148852Domain d2qjgn_: 2qjg N: [167637]
        automated match to d1ojxa_
        complexed with f2p
      15. 1148853Domain d2qjgo_: 2qjg O: [167638]
        automated match to d1ojxa_
        complexed with f2p
      16. 1148854Domain d2qjgp_: 2qjg P: [167639]
        automated match to d1ojxa_
        complexed with f2p
      17. 1148855Domain d2qjgq_: 2qjg Q: [167640]
        automated match to d1ojxa_
        complexed with f2p
      18. 1148856Domain d2qjgr_: 2qjg R: [167641]
        automated match to d1ojxa_
        complexed with f2p
      19. 1148857Domain d2qjgs_: 2qjg S: [167642]
        automated match to d1ojxa_
        complexed with f2p
      20. 1148858Domain d2qjgt_: 2qjg T: [167643]
        automated match to d1ojxa_
        complexed with f2p
    2. Domains for 2qjh:
      1. 1148859Domain d2qjha_: 2qjh A: [167644]
        automated match to d1ojxa_
        complexed with 13p
      2. 1148860Domain d2qjhb_: 2qjh B: [167645]
        automated match to d1ojxa_
        complexed with 13p
      3. 1148861Domain d2qjhc_: 2qjh C: [167646]
        automated match to d1ojxa_
        complexed with 13p
      4. 1148862Domain d2qjhd_: 2qjh D: [167647]
        automated match to d1ojxa_
        complexed with 13p
      5. 1148863Domain d2qjhe_: 2qjh E: [167648]
        automated match to d1ojxa_
        complexed with 13p
      6. 1148864Domain d2qjhf_: 2qjh F: [167649]
        automated match to d1ojxa_
        complexed with 13p
      7. 1148865Domain d2qjhg_: 2qjh G: [167650]
        automated match to d1ojxa_
        complexed with 13p
      8. 1148866Domain d2qjhh_: 2qjh H: [167651]
        automated match to d1ojxa_
        complexed with 13p
      9. 1148867Domain d2qjhi_: 2qjh I: [167652]
        automated match to d1ojxa_
        complexed with 13p
      10. 1148868Domain d2qjhj_: 2qjh J: [167653]
        automated match to d1ojxa_
        complexed with 13p
      11. 1148869Domain d2qjhk_: 2qjh K: [167654]
        automated match to d1ojxa_
        complexed with 13p
      12. 1148870Domain d2qjhl_: 2qjh L: [167655]
        automated match to d1ojxa_
        complexed with 13p
      13. 1148871Domain d2qjhm_: 2qjh M: [167656]
        automated match to d1ojxa_
        complexed with 13p
      14. 1148872Domain d2qjhn_: 2qjh N: [167657]
        automated match to d1ojxa_
        complexed with 13p
      15. 1148873Domain d2qjho_: 2qjh O: [167658]
        automated match to d1ojxa_
        complexed with 13p
      16. 1148874Domain d2qjhp_: 2qjh P: [167659]
        automated match to d1ojxa_
        complexed with 13p
      17. 1148875Domain d2qjhq_: 2qjh Q: [167660]
        automated match to d1ojxa_
        complexed with 13p
      18. 1148876Domain d2qjhr_: 2qjh R: [167661]
        automated match to d1ojxa_
        complexed with 13p
      19. 1148877Domain d2qjhs_: 2qjh S: [167662]
        automated match to d1ojxa_
        complexed with 13p
      20. 1148878Domain d2qjht_: 2qjh T: [167663]
        automated match to d1ojxa_
        complexed with 13p
    3. Domains for 2qji:
      1. 1148879Domain d2qjia_: 2qji A: [167664]
        automated match to d1ojxa_
        complexed with 13p, gol
      2. 1148880Domain d2qjib_: 2qji B: [167665]
        automated match to d1ojxa_
        complexed with 13p, gol
      3. 1148881Domain d2qjic_: 2qji C: [167666]
        automated match to d1ojxa_
        complexed with 13p, gol
      4. 1148882Domain d2qjid_: 2qji D: [167667]
        automated match to d1ojxa_
        complexed with 13p, gol
      5. 1148883Domain d2qjie_: 2qji E: [167668]
        automated match to d1ojxa_
        complexed with 13p, gol
      6. 1148884Domain d2qjif_: 2qji F: [167669]
        automated match to d1ojxa_
        complexed with 13p, gol
      7. 1148885Domain d2qjig_: 2qji G: [167670]
        automated match to d1ojxa_
        complexed with 13p, gol
      8. 1148886Domain d2qjih_: 2qji H: [167671]
        automated match to d1ojxa_
        complexed with 13p, gol
      9. 1148887Domain d2qjii_: 2qji I: [167672]
        automated match to d1ojxa_
        complexed with 13p, gol
      10. 1148888Domain d2qjij_: 2qji J: [167673]
        automated match to d1ojxa_
        complexed with 13p, gol
      11. 1148889Domain d2qjik_: 2qji K: [167674]
        automated match to d1ojxa_
        complexed with 13p, gol
      12. 1148890Domain d2qjil_: 2qji L: [167675]
        automated match to d1ojxa_
        complexed with 13p, gol
      13. 1148891Domain d2qjim_: 2qji M: [167676]
        automated match to d1ojxa_
        complexed with 13p, gol
      14. 1148892Domain d2qjin_: 2qji N: [167677]
        automated match to d1ojxa_
        complexed with 13p, gol
      15. 1148893Domain d2qjio_: 2qji O: [167678]
        automated match to d1ojxa_
        complexed with 13p, gol
      16. 1148894Domain d2qjip_: 2qji P: [167679]
        automated match to d1ojxa_
        complexed with 13p, gol
      17. 1148895Domain d2qjiq_: 2qji Q: [167680]
        automated match to d1ojxa_
        complexed with 13p, gol
      18. 1148896Domain d2qjir_: 2qji R: [167681]
        automated match to d1ojxa_
        complexed with 13p, gol
      19. 1148897Domain d2qjis_: 2qji S: [167682]
        automated match to d1ojxa_
        complexed with 13p, gol
      20. 1148898Domain d2qjit_: 2qji T: [167683]
        automated match to d1ojxa_
        complexed with 13p, gol
  21. 1148899Mycobacterium avium [TaxId:243243] [189378] (1 PDB entry)
  22. 1148904Mycobacterium smegmatis [TaxId:1772] [196434] (1 PDB entry)
  23. 1148906Neisseria meningitidis [TaxId:491] [188931] (1 PDB entry)
  24. 1148911Oceanobacillus iheyensis [TaxId:221109] [188435] (1 PDB entry)
  25. 1148914Rhizobium meliloti (Sinorhizobium meliloti) [TaxId:382] [188471] (1 PDB entry)
  26. 1148917Rhodopseudomonas palustris [TaxId:1076] [188556] (2 PDB entries)
    1. Domain for 3dz1:
    2. Domains for 3eb2:
      1. 1148919Domain d3eb2a_: 3eb2 A: [174809]
        automated match to d1xkya1
        complexed with pge
      2. 1148920Domain d3eb2b_: 3eb2 B: [174810]
        automated match to d1xkya1
        complexed with pge
      3. 1148921Domain d3eb2c_: 3eb2 C: [174811]
        automated match to d1xkya1
        complexed with pge
      4. 1148922Domain d3eb2d_: 3eb2 D: [174812]
        automated match to d1xkya1
        complexed with pge
  27. 1148923Staphylococcus aureus [TaxId:282458] [188514] (1 PDB entry)
  28. 1148928Staphylococcus aureus [TaxId:93061] [193178] (1 PDB entry)
  29. 1148930Staphylococcus aureus [TaxId:93062] [188553] (2 PDB entries)
    1. Domains for 3di0:
      1. 1148933Domain d3di0a_: 3di0 A: [173969]
        automated match to d1o5ka_
        complexed with gol
      2. 1148934Domain d3di0b_: 3di0 B: [173970]
        automated match to d1o5ka_
        complexed with gol
    2. Domains for 3di1:
      1. 1148931Domain d3di1a_: 3di1 A: [173971]
        automated match to d1o5ka_
        complexed with pyr
      2. 1148932Domain d3di1b_: 3di1 B: [173972]
        automated match to d1o5ka_
        complexed with pyr
  30. 1148935Sulfolobus acidocaldarius [TaxId:330779] [187925] (3 PDB entries)
    1. Domains for 2nuw:
      1. 1148936Domain d2nuwa_: 2nuw A: [166362]
        automated match to d1w37a_
        complexed with mg
      2. 1148937Domain d2nuwb_: 2nuw B: [166363]
        automated match to d1w37a_
        complexed with mg
    2. Domains for 2nux:
      1. 1148940Domain d2nuxa_: 2nux A: [166364]
        automated match to d1w37a_
        complexed with mg
      2. 1148941Domain d2nuxb_: 2nux B: [166365]
        automated match to d1w37a_
        complexed with mg
    3. Domains for 2nuy:
      1. 1148938Domain d2nuya_: 2nuy A: [166366]
        automated match to d1w37a_
        complexed with mg, pyr
      2. 1148939Domain d2nuyb_: 2nuy B: [166367]
        automated match to d1w37a_
        complexed with mg, pyr
  31. 1148942Thermoproteus tenax [TaxId:2271] [188383] (2 PDB entries)
    1. Domains for 2r91:
      1. 1148943Domain d2r91a_: 2r91 A: [168013]
        automated match to d1w37a_
        complexed with so4
      2. 1148944Domain d2r91b_: 2r91 B: [168014]
        automated match to d1w37a_
        complexed with so4
      3. 1148945Domain d2r91c_: 2r91 C: [168015]
        automated match to d1w37a_
        complexed with so4
      4. 1148946Domain d2r91d_: 2r91 D: [168016]
        automated match to d1w37a_
        complexed with so4
    2. Domains for 2r94:
      1. 1148947Domain d2r94a_: 2r94 A: [168017]
        automated match to d1w37a_
        complexed with pyr
      2. 1148948Domain d2r94b_: 2r94 B: [168018]
        automated match to d1w37a_
        complexed with pyr
      3. 1148949Domain d2r94c_: 2r94 C: [168019]
        automated match to d1w37a_
        complexed with pyr
      4. 1148950Domain d2r94d_: 2r94 D: [168020]
        automated match to d1w37a_
        complexed with pyr
  32. 1148951Thermus thermophilus [TaxId:300852] [186838] (2 PDB entries)
    1. Domains for 1wx0:
      1. 1148953Domain d1wx0b_: 1wx0 B: [121383]
        Other proteins in same PDB: d1wx0a1
        automated match to d1vpxa_
      2. 1148954Domain d1wx0c_: 1wx0 C: [121384]
        Other proteins in same PDB: d1wx0a1
        automated match to d1vpxa_
      3. 1148955Domain d1wx0d_: 1wx0 D: [121385]
        Other proteins in same PDB: d1wx0a1
        automated match to d1vpxa_
      4. 1148956Domain d1wx0e_: 1wx0 E: [121386]
        Other proteins in same PDB: d1wx0a1
        automated match to d1vpxa_
      5. 1148957Domain d1wx0f_: 1wx0 F: [121387]
        Other proteins in same PDB: d1wx0a1
        automated match to d1vpxa_
      6. 1148958Domain d1wx0g_: 1wx0 G: [121388]
        Other proteins in same PDB: d1wx0a1
        automated match to d1vpxa_
      7. 1148959Domain d1wx0h_: 1wx0 H: [121389]
        Other proteins in same PDB: d1wx0a1
        automated match to d1vpxa_
      8. 1148960Domain d1wx0i_: 1wx0 I: [121390]
        Other proteins in same PDB: d1wx0a1
        automated match to d1vpxa_
      9. 1148961Domain d1wx0j_: 1wx0 J: [121391]
        Other proteins in same PDB: d1wx0a1
        automated match to d1vpxa_
    2. Domain for 2pcq:

More info for Protein automated matches from c.1.10.0: automated matches

Timeline for Protein automated matches from c.1.10.0: automated matches: