Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2685877Class a: All alpha proteins [46456] (290 folds)
  3. 2690796Fold a.3: Cytochrome c [46625] (1 superfamily)
    core: 3 helices; folded leaf, opened
  4. 2690797Superfamily a.3.1: Cytochrome c [46626] (9 families) (S)
    covalently-bound heme completes the core
  5. 2690798Family a.3.1.1: monodomain cytochrome c [46627] (16 proteins)
  6. 2691317Protein automated matches [190113] (17 species)
    not a true protein

Species:

  1. 2691318Cow (Bos taurus) [TaxId:9913] [187444] (2 PDB entries)
    1. Domain for 2b4z:
    2. Domain for 6ff5:
  2. 2691321Crithidia fasciculata [TaxId:5656] [189994] (2 PDB entries)
    1. Domains for 2w9k:
      1. 2691322Domain d2w9ka_: 2w9k A: [304568]
        automated match to d2yk3a_
        complexed with hec, so4
      2. 2691323Domain d2w9kb_: 2w9k B: [304569]
        automated match to d2yk3a_
        complexed with hec, so4
      3. 2691324Domain d2w9kc_: 2w9k C: [304570]
        automated match to d2yk3a_
        complexed with hec, so4
    2. Domains for 2yk3:
      1. 2691325Domain d2yk3a_: 2yk3 A: [170831]
        automated match to d1hroa_
        complexed with hec, so4
      2. 2691326Domain d2yk3b_: 2yk3 B: [170832]
        automated match to d1hroa_
        complexed with hec, so4
      3. 2691327Domain d2yk3c_: 2yk3 C: [170833]
        automated match to d1hroa_
        complexed with hec, so4
  3. 2691328Hizikia fusiformis [TaxId:74103] [188620] (1 PDB entry)
  4. 2691335Leishmania major [TaxId:5664] [194459] (2 PDB entries)
    1. Domain for 4dy9:
    2. Domain for 4ged:
  5. 2691338Mouse (Mus musculus) [TaxId:10090] [187404] (1 PDB entry)
  6. 2691340Norway rat (Rattus norvegicus) [TaxId:10116] [322473] (5 PDB entries)
    1. Domains for 5c0z:
      1. 2691341Domain d5c0za_: 5c0z A: [322983]
        automated match to d2b4za_
        complexed with fc6, hec
      2. 2691342Domain d5c0zb_: 5c0z B: [323085]
        automated match to d2b4za_
        complexed with fc6, hec
      3. 2691343Domain d5c0zc_: 5c0z C: [323008]
        automated match to d2b4za_
        complexed with fc6, hec
      4. 2691344Domain d5c0zd_: 5c0z D: [322990]
        automated match to d2b4za_
        complexed with fc6, hec
    2. Domains for 5c9m:
      1. 2691351Domain d5c9ma_: 5c9m A: [322989]
        automated match to d2b4za_
        complexed with fc6, hec
      2. 2691352Domain d5c9mb_: 5c9m B: [322991]
        automated match to d2b4za_
        complexed with fc6, hec
      3. 2691353Domain d5c9mc_: 5c9m C: [322878]
        automated match to d2b4za_
        complexed with fc6, hec
      4. 2691354Domain d5c9md_: 5c9m D: [322883]
        automated match to d2b4za_
        complexed with fc6, hec
    3. Domains for 5df5:
      1. 2691347Domain d5df5a_: 5df5 A: [322509]
        automated match to d2b4za_
        complexed with fc6, hec
      2. 2691348Domain d5df5b_: 5df5 B: [322568]
        automated match to d2b4za_
        complexed with fc6, hec
      3. 2691349Domain d5df5c_: 5df5 C: [322530]
        automated match to d2b4za_
        complexed with fc6, hec
      4. 2691350Domain d5df5d_: 5df5 D: [322474]
        automated match to d2b4za_
        complexed with fc6, hec
    4. Domains for 6n1o:
      1. 2691355Domain d6n1oa_: 6n1o A: [376049]
        automated match to d5c0za_
        complexed with edo, fc6, hec; mutant
      2. 2691356Domain d6n1ob_: 6n1o B: [376042]
        automated match to d5c0za_
        complexed with edo, fc6, hec; mutant
      3. 2691357Domain d6n1oc_: 6n1o C: [376038]
        automated match to d5c0za_
        complexed with edo, fc6, hec; mutant
      4. 2691358Domain d6n1od_: 6n1o D: [376060]
        automated match to d5c0za_
        complexed with edo, fc6, hec; mutant
    5. Domains for 7ljx:
      1. 2691345Domain d7ljxa_: 7ljx A: [403450]
        automated match to d5c0za_
        complexed with fc6, hec; mutant
      2. 2691346Domain d7ljxb_: 7ljx B: [403489]
        automated match to d5c0za_
        complexed with fc6, hec; mutant
  7. 2691359Paracoccus versutus [TaxId:34007] [187457] (3 PDB entries)
    1. Domain for 2bgv:
    2. Domain for 2bh4:
    3. Domain for 2bh5:
  8. 2691363Phaeodactylum tricornutum [TaxId:2850] [188813] (1 PDB entry)
  9. 2691365Phormidium laminosum [TaxId:32059] [187369] (2 PDB entries)
    1. Domains for 2v08:
      1. 2691367Domain d2v08a_: 2v08 A: [168271]
        automated match to d1c6sa_
        complexed with cl, hec, imd, zn
      2. 2691368Domain d2v08b_: 2v08 B: [168272]
        automated match to d1c6sa_
        complexed with cl, hec, imd, zn
    2. Domain for 3ph2:
  10. 2691369Pichia membranifaciens [TaxId:4926] [349958] (1 PDB entry)
  11. 2691371Pseudomonas aeruginosa [TaxId:287] [187678] (1 PDB entry)
  12. 2691374Pseudomonas putida [TaxId:303] [186836] (1 PDB entry)
  13. 2691377Pseudomonas sp. [TaxId:306] [390586] (1 PDB entry)
  14. 2691380Pseudomonas stutzeri [TaxId:96564] [255233] (1 PDB entry)
  15. 2691382Thermosynechococcus elongatus [TaxId:197221] [260557] (2 PDB entries)
    1. Domain for 4pj0:
    2. Domains for 6tr1:
      1. 2691383Domain d6tr1a_: 6tr1 A: [378670]
        automated match to d1c6sa_
        complexed with hec, na
      2. 2691384Domain d6tr1c_: 6tr1 C: [378682]
        automated match to d1c6sa_
        complexed with hec, na
      3. 2691385Domain d6tr1e_: 6tr1 E: [378672]
        automated match to d1c6sa_
        complexed with hec, na
  16. 2691387Thermosynechococcus elongatus [TaxId:32046] [188751] (3 PDB entries)
    1. Domain for 2axt:
    2. Domain for 3bz1:
    3. Domain for 3bz2:
  17. 2691391Thermosynechococcus vulcanus [TaxId:32053] [189921] (1 PDB entry)

More info for Protein automated matches from a.3.1.1: monodomain cytochrome c

Timeline for Protein automated matches from a.3.1.1: monodomain cytochrome c: