Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1980368Fold a.3: Cytochrome c [46625] (1 superfamily)
    core: 3 helices; folded leaf, opened
  4. 1980369Superfamily a.3.1: Cytochrome c [46626] (9 families) (S)
    covalently-bound heme completes the core
  5. 1980370Family a.3.1.1: monodomain cytochrome c [46627] (16 protein domains)
  6. 1980768Protein automated matches [190113] (17 species)
    not a true protein

Species:

  1. 1980769Cow (Bos taurus) [TaxId:9913] [187444] (1 PDB entry)
  2. 1980771Crithidia fasciculata [TaxId:5656] [189994] (2 PDB entries)
    1. Domains for 2w9k:
      1. 1980775Domain d2w9ka_: 2w9k A: [304568]
        automated match to d2yk3a_
        complexed with hec, so4
      2. 1980776Domain d2w9kb_: 2w9k B: [304569]
        automated match to d2yk3a_
        complexed with hec, so4
      3. 1980777Domain d2w9kc_: 2w9k C: [304570]
        automated match to d2yk3a_
        complexed with hec, so4
    2. Domains for 2yk3:
      1. 1980772Domain d2yk3a_: 2yk3 A: [170831]
        automated match to d1hroa_
        complexed with hem, so4
      2. 1980773Domain d2yk3b_: 2yk3 B: [170832]
        automated match to d1hroa_
        complexed with hem, so4
      3. 1980774Domain d2yk3c_: 2yk3 C: [170833]
        automated match to d1hroa_
        complexed with hem, so4
  3. 1980778Hizikia fusiformis [TaxId:74103] [188620] (1 PDB entry)
  4. 1980785Leishmania major [TaxId:5664] [194459] (2 PDB entries)
    1. Domain for 4dy9:
    2. Domain for 4ged:
  5. 1980788Mouse (Mus musculus) [TaxId:10090] [187404] (1 PDB entry)
  6. 1980790Paracoccus versutus [TaxId:34007] [187457] (3 PDB entries)
    1. Domain for 2bgv:
    2. Domain for 2bh4:
    3. Domain for 2bh5:
  7. 1980794Phaeodactylum tricornutum [TaxId:2850] [188813] (1 PDB entry)
  8. 1980796Phormidium laminosum [TaxId:32059] [187369] (2 PDB entries)
    1. Domains for 2v08:
      1. 1980798Domain d2v08a_: 2v08 A: [168271]
        automated match to d1c6sa_
        complexed with cl, hem, imd, zn
      2. 1980799Domain d2v08b_: 2v08 B: [168272]
        automated match to d1c6sa_
        complexed with cl, hem, imd, zn
    2. Domain for 3ph2:
  9. 1980800Pseudomonas aeruginosa [TaxId:287] [187678] (1 PDB entry)
  10. 1980803Pseudomonas putida [TaxId:303] [186836] (1 PDB entry)
  11. 1980806Pseudomonas stutzeri [TaxId:96564] [255233] (1 PDB entry)
  12. 1980808Thermosynechococcus elongatus [TaxId:197221] [260557] (1 PDB entry)
  13. 1980810Thermosynechococcus elongatus [TaxId:32046] [188751] (3 PDB entries)
    1. Domain for 2axt:
    2. Domain for 3bz1:
    3. Domain for 3bz2:
  14. 1980814Thermosynechococcus vulcanus [TaxId:32053] [189921] (1 PDB entry)
  15. 2279172Rattus norvegicus [TaxId:10116] [322473] (3 PDB entries)
    1. Domains for 5c0z:
      1. 2279682Domain d5c0za_: 5c0z A: [322983]
        automated match to d2b4za_
        complexed with fc6, hec
      2. 2279689Domain d5c0zd_: 5c0z D: [322990]
        automated match to d2b4za_
        complexed with fc6, hec
      3. 2279707Domain d5c0zc_: 5c0z C: [323008]
        automated match to d2b4za_
        complexed with fc6, hec
      4. 2279784Domain d5c0zb_: 5c0z B: [323085]
        automated match to d2b4za_
        complexed with fc6, hec
    2. Domains for 5c9m:
      1. 2279577Domain d5c9mc_: 5c9m C: [322878]
        automated match to d2b4za_
        complexed with fc6, hec
      2. 2279582Domain d5c9md_: 5c9m D: [322883]
        automated match to d2b4za_
        complexed with fc6, hec
      3. 2279688Domain d5c9ma_: 5c9m A: [322989]
        automated match to d2b4za_
        complexed with fc6, hec
      4. 2279690Domain d5c9mb_: 5c9m B: [322991]
        automated match to d2b4za_
        complexed with fc6, hec
    3. Domains for 5df5:
      1. 2279173Domain d5df5d_: 5df5 D: [322474]
        automated match to d2b4za_
        complexed with fc6, hec
      2. 2279208Domain d5df5a_: 5df5 A: [322509]
        automated match to d2b4za_
        complexed with fc6, hec
      3. 2279229Domain d5df5c_: 5df5 C: [322530]
        automated match to d2b4za_
        complexed with fc6, hec
      4. 2279267Domain d5df5b_: 5df5 B: [322568]
        automated match to d2b4za_
        complexed with fc6, hec
  16. 2294404Pseudomonas aeruginosa [TaxId:208964] [337705] (2 PDB entries)
    1. Domain for 5xec:
    2. Domain for 5xed:
  17. 2294464Hydrogenobacter thermophilus [TaxId:608538] [337765] (2 PDB entries)
    1. Domain for 5xec:
    2. Domain for 5xed:

More info for Protein automated matches from a.3.1.1: monodomain cytochrome c

Timeline for Protein automated matches from a.3.1.1: monodomain cytochrome c: