Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2335133Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
    multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
  4. 2335134Superfamily a.102.1: Six-hairpin glycosidases [48208] (10 families) (S)
  5. 2335407Family a.102.1.0: automated matches [191318] (1 protein)
    not a true family
  6. 2335408Protein automated matches [190108] (21 species)
    not a true protein

Species:

  1. 2335409Anabaena sp. [TaxId:360069] [230753] (1 PDB entry)
  2. 2335412Bacillus halodurans [TaxId:272558] [186832] (1 PDB entry)
  3. 2335414Bacillus thermoamylovorans [TaxId:35841] [371698] (1 PDB entry)
  4. 2335417Caldicellulosiruptor saccharolyticus [TaxId:351627] [315551] (2 PDB entries)
    1. Domain for 4z4j:
    2. Domain for 4z4l:
  5. 2335420Clostridium acetobutylicum [TaxId:272562] [274794] (1 PDB entry)
  6. 2335423Clostridium cellulovorans [TaxId:1493] [256855] (3 PDB entries)
    1. Domain for 4xwl:
    2. Domain for 4xwm:
    3. Domain for 4xwn:
  7. 2335427Clostridium thermocellum [TaxId:1515] [255683] (6 PDB entries)
    1. Domain for 2xfg:
    2. Domains for 5gxx:
      1. 2335428Domain d5gxxa1: 5gxx A:30-471 [339456]
        Other proteins in same PDB: d5gxxa2, d5gxxa3, d5gxxb2
        automated match to d1tf4a1
        complexed with ca, cl, trs
      2. 2335429Domain d5gxxb1: 5gxx B:30-471 [339452]
        Other proteins in same PDB: d5gxxa2, d5gxxa3, d5gxxb2
        automated match to d1tf4a1
        complexed with ca, cl, trs
    3. Domains for 5gxy:
      1. 2335431Domain d5gxya1: 5gxy A:30-471 [339439]
        Other proteins in same PDB: d5gxya2, d5gxyb2
        automated match to d1tf4a1
        complexed with 7pe, bgc, br, ca, cl, trs
      2. 2335432Domain d5gxyb1: 5gxy B:30-471 [339443]
        Other proteins in same PDB: d5gxya2, d5gxyb2
        automated match to d1tf4a1
        complexed with 7pe, bgc, br, ca, cl, trs
    4. Domains for 5gxz:
      1. 2335437Domain d5gxza1: 5gxz A:30-471 [339447]
        Other proteins in same PDB: d5gxza2, d5gxzb2
        automated match to d1tf4a1
        complexed with 7pe, bgc, br, ca, cl
      2. 2335438Domain d5gxzb1: 5gxz B:30-471 [339449]
        Other proteins in same PDB: d5gxza2, d5gxzb2
        automated match to d1tf4a1
        complexed with 7pe, bgc, br, ca, cl
    5. Domains for 5gy0:
      1. 2335433Domain d5gy0a1: 5gy0 A:30-471 [339494]
        Other proteins in same PDB: d5gy0a2, d5gy0b2
        automated match to d1tf4a1
        complexed with bgc, br, ca, cl, pg4
      2. 2335434Domain d5gy0b1: 5gy0 B:30-471 [339445]
        Other proteins in same PDB: d5gy0a2, d5gy0b2
        automated match to d1tf4a1
        complexed with bgc, br, ca, cl, pg4
    6. Domains for 5gy1:
      1. 2335435Domain d5gy1a1: 5gy1 A:30-471 [339441]
        Other proteins in same PDB: d5gy1a2, d5gy1b2
        automated match to d1tf4a1
        complexed with bgc, br, ca, cl
      2. 2335436Domain d5gy1b1: 5gy1 B:30-471 [339480]
        Other proteins in same PDB: d5gy1a2, d5gy1b2
        automated match to d1tf4a1
        complexed with bgc, br, ca, cl
  8. 2335439Klebsiella pneumoniae [TaxId:573] [327331] (1 PDB entry)
  9. 2335441Marinomonas mediterranea [TaxId:717774] [348507] (1 PDB entry)
  10. 2335444Nostoc sp. [TaxId:457941] [358040] (1 PDB entry)
  11. 2335446Paenibacillus sp. [TaxId:1392929] [330282] (1 PDB entry)
  12. 2335449Perinereis brevicirris [TaxId:6356] [319158] (2 PDB entries)
    1. Domains for 4zg8:
      1. 2335452Domain d4zg8a_: 4zg8 A: [319159]
        automated match to d1ia6a_
        complexed with btb, ca, cl, na
      2. 2335453Domain d4zg8b_: 4zg8 B: [319189]
        automated match to d1ia6a_
        complexed with btb, ca, cl, na
    2. Domains for 4zh5:
      1. 2335450Domain d4zh5a_: 4zh5 A: [319185]
        automated match to d1ia6a_
        complexed with bgc, ca, cl, na
      2. 2335451Domain d4zh5b_: 4zh5 B: [319179]
        automated match to d1ia6a_
        complexed with bgc, ca, cl, na
  13. 2335454Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [189664] (3 PDB entries)
    1. Domains for 3qpf:
      1. 2335459Domain d3qpfa_: 3qpf A: [184553]
        automated match to d2nvpa1
        complexed with edo
      2. 2335460Domain d3qpfb_: 3qpf B: [184554]
        automated match to d2nvpa1
        complexed with edo
    2. Domains for 3qry:
      1. 2335455Domain d3qrya_: 3qry A: [184599]
        automated match to d2nvpa1
        complexed with dmj, edo
      2. 2335456Domain d3qryb_: 3qry B: [184600]
        automated match to d2nvpa1
        complexed with dmj, edo
    3. Domains for 3qsp:
      1. 2335457Domain d3qspa_: 3qsp A: [184611]
        automated match to d2nvpa1
        complexed with edo
      2. 2335458Domain d3qspb_: 3qsp B: [184612]
        automated match to d2nvpa1
        complexed with edo
  14. 2335461Raoultella ornithinolytica [TaxId:54291] [320307] (1 PDB entry)
  15. 2335463Rhodothermus marinus [TaxId:29549] [230219] (4 PDB entries)
    1. Domain for 3wkf:
    2. Domain for 3wkg:
    3. Domain for 3wkh:
    4. Domain for 3wki:
  16. 2335468Spirochaeta thermophila [TaxId:665571] [367658] (1 PDB entry)
  17. 2335473Streptococcus agalactiae [TaxId:1311] [225654] (1 PDB entry)
  18. 2335475Streptococcus agalactiae [TaxId:211110] [226492] (2 PDB entries)
    1. Domains for 3vxd:
      1. 2335476Domain d3vxda_: 3vxd A: [218140]
        automated match to d2fv1a_
        complexed with so4; mutant
      2. 2335477Domain d3vxdb_: 3vxd B: [218141]
        automated match to d2fv1a_
        complexed with so4; mutant
      3. 2335478Domain d3vxdc_: 3vxd C: [218142]
        automated match to d2fv1a_
        complexed with so4; mutant
      4. 2335479Domain d3vxdd_: 3vxd D: [218143]
        automated match to d2fv1a_
        complexed with so4; mutant
    2. Domain for 3wux:
  19. 2335481Streptococcus agalactiae [TaxId:216495] [225979] (3 PDB entries)
    1. Domain for 3ani:
    2. Domain for 3anj:
    3. Domain for 3ank:
  20. 2335485Teredinibacter turnerae [TaxId:377629] [358534] (4 PDB entries)
    1. Domain for 6g00:
    2. Domain for 6g09:
    3. Domain for 6g0b:
    4. Domain for 6g0n:
  21. 2335490Worm (Eisenia fetida) [TaxId:6396] [256152] (1 PDB entry)

More info for Protein automated matches from a.102.1.0: automated matches

Timeline for Protein automated matches from a.102.1.0: automated matches: