SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)

Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies

Superfamily a.102.1: Six-hairpin glycosidases [48208] (10 families)
Family a.102.1.0: automated matches [191318] (1 protein)
not a true family
Protein automated matches [190108] (23 species)
not a true protein

Species:

Anabaena sp. [TaxId:360069] [230753] (1 PDB entry)
- Domains for 2gz6:
  1. Domain d2gz6a_: 2gz6 A: [230754]
    automated match to d3wkga_
  2. Domain d2gz6b_: 2gz6 B: [230755]
    automated match to d3wkga_
Bacillus halodurans [TaxId:272558] [186832] (1 PDB entry)
- Domain for 1wu5:
  - Domain d1wu5a_: 1wu5 A: [121273]
    automated match to d1h12a_
    complexed with gol, ni, xyp
Bacillus thermoamylovorans [TaxId:35841] [371698] (1 PDB entry)
- Domains for 5zhb:
  1. Domain d5zhba_: 5zhb A: [371699]
    automated match to d3wkga_
    complexed with edo
  2. Domain d5zhbb_: 5zhb B: [371705]
    automated match to d3wkga_
    complexed with edo
Caldicellulosiruptor saccharolyticus [TaxId:351627] [315551] (3 PDB entries)
1. Domain for 4z4j:
  - Domain d4z4ja1: 4z4j A:1-390 [316471]
    Other proteins in same PDB: d4z4ja2
    automated match to d3wkga_
    complexed with edo, ipa
2. Domain for 4z4l:
  - Domain d4z4la1: 4z4l A:1-390 [316504]
    Other proteins in same PDB: d4z4la2
    automated match to d3wkga_
    complexed with edo
3. Domain for 7d5g:
  - Domain d7d5ga_: 7d5g A: [421034]
    automated match to d3vw5b_
    complexed with bgc, cl, fru
Clostridium acetobutylicum [TaxId:272562] [274794] (1 PDB entry)
- Domains for 4wu0:
  1. Domain d4wu0a_: 4wu0 A: [274795]
    automated match to d1nc5a_
  2. Domain d4wu0b_: 4wu0 B: [274796]
    automated match to d1nc5a_
Clostridium cellulovorans [TaxId:1493] [256855] (3 PDB entries)
1. Domain for 4xwl:
  - Domain d4xwla_: 4xwl A: [278766]
    automated match to d1l1ya_
    complexed with 1pe, ca, edo, p33, peg, pg4, pge, so4
2. Domain for 4xwm:
  - Domain d4xwma_: 4xwm A: [278767]
    automated match to d1l1ya_
    complexed with ca, edo
3. Domain for 4xwn:
  - Domain d4xwna_: 4xwn A: [278765]
    automated match to d1l1ya_
    complexed with ca
Clostridium thermocellum [TaxId:1515] [255683] (6 PDB entries)
1. Domain for 2xfg:
  - Domain d2xfga1: 2xfg A:1-444 [244497]
    Other proteins in same PDB: d2xfga2
    automated match to d1ia6a_
    complexed with ca, cl
2. Domains for 5gxx:
  1. Domain d5gxxa1: 5gxx A:30-471 [339456]
    Other proteins in same PDB: d5gxxa2, d5gxxa3, d5gxxb2
    automated match to d1tf4a1
    complexed with ca, cl, trs
  2. Domain d5gxxb1: 5gxx B:30-471 [339452]
    Other proteins in same PDB: d5gxxa2, d5gxxa3, d5gxxb2
    automated match to d1tf4a1
    complexed with ca, cl, trs
3. Domains for 5gxy:
  1. Domain d5gxya1: 5gxy A:30-471 [339439]
    Other proteins in same PDB: d5gxya2, d5gxyb2
    automated match to d1tf4a1
    complexed with 7pe, br, ca, cl, trs
  2. Domain d5gxyb1: 5gxy B:30-471 [339443]
    Other proteins in same PDB: d5gxya2, d5gxyb2
    automated match to d1tf4a1
    complexed with 7pe, br, ca, cl, trs
4. Domains for 5gxz:
  1. Domain d5gxza1: 5gxz A:30-471 [339447]
    Other proteins in same PDB: d5gxza2, d5gxzb2
    automated match to d1tf4a1
    complexed with 7pe, br, ca, cl
  2. Domain d5gxzb1: 5gxz B:30-471 [339449]
    Other proteins in same PDB: d5gxza2, d5gxzb2
    automated match to d1tf4a1
    complexed with 7pe, br, ca, cl
5. Domains for 5gy0:
  1. Domain d5gy0a1: 5gy0 A:30-471 [339494]
    Other proteins in same PDB: d5gy0a2, d5gy0b2
    automated match to d1tf4a1
    complexed with br, ca, cl, pg4
  2. Domain d5gy0b1: 5gy0 B:30-471 [339445]
    Other proteins in same PDB: d5gy0a2, d5gy0b2
    automated match to d1tf4a1
    complexed with br, ca, cl, pg4
6. Domains for 5gy1:
  1. Domain d5gy1a1: 5gy1 A:30-471 [339441]
    Other proteins in same PDB: d5gy1a2, d5gy1b2
    automated match to d1tf4a1
    complexed with br, ca, cl
  2. Domain d5gy1b1: 5gy1 B:30-471 [339480]
    Other proteins in same PDB: d5gy1a2, d5gy1b2
    automated match to d1tf4a1
    complexed with br, ca, cl
Klebsiella pneumoniae [TaxId:573] [327331] (1 PDB entry)
- Domain for 5gy3:
  - Domain d5gy3a_: 5gy3 A: [327332]
    automated match to d1wzza1
Marinomonas mediterranea [TaxId:717774] [348507] (1 PDB entry)
- Domains for 5x32:
  1. Domain d5x32a_: 5x32 A: [348508]
    automated match to d2gz6b_
    complexed with po4
  2. Domain d5x32b_: 5x32 B: [348511]
    automated match to d2gz6b_
    complexed with po4
Nostoc sp. [TaxId:457941] [358040] (1 PDB entry)
- Domain for 6f04:
  - Domain d6f04a1: 6f04 A:3-391 [358041]
    Other proteins in same PDB: d6f04a2
    automated match to d3wkfa_
    complexed with cl, edo
Paenibacillus sp. [TaxId:1392929] [330282] (1 PDB entry)
- Domains for 5xd0:
  1. Domain d5xd0a_: 5xd0 A: [333350]
    automated match to d1v5da_
    complexed with peg, pge
  2. Domain d5xd0b_: 5xd0 B: [333349]
    automated match to d1v5da_
    complexed with peg, pge
Perinereis brevicirris [TaxId:6356] [319158] (2 PDB entries)
1. Domains for 4zg8:
  1. Domain d4zg8a_: 4zg8 A: [319159]
    automated match to d1ia6a_
    complexed with btb, ca, cl, na
  2. Domain d4zg8b_: 4zg8 B: [319189]
    automated match to d1ia6a_
    complexed with btb, ca, cl, na
2. Domains for 4zh5:
  1. Domain d4zh5a_: 4zh5 A: [319185]
    automated match to d1ia6a_
    complexed with ca, cl, na
  2. Domain d4zh5b_: 4zh5 B: [319179]
    automated match to d1ia6a_
    complexed with ca, cl, na
Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [189664] (3 PDB entries)
1. Domains for 3qpf:
  1. Domain d3qpfa_: 3qpf A: [184553]
    automated match to d2nvpa1
    complexed with edo
  2. Domain d3qpfb_: 3qpf B: [184554]
    automated match to d2nvpa1
    complexed with edo
2. Domains for 3qry:
  1. Domain d3qrya_: 3qry A: [184599]
    automated match to d2nvpa1
    complexed with dmj, edo
  2. Domain d3qryb_: 3qry B: [184600]
    automated match to d2nvpa1
    complexed with dmj, edo
3. Domains for 3qsp:
  1. Domain d3qspa_: 3qsp A: [184611]
    automated match to d2nvpa1
    complexed with edo
  2. Domain d3qspb_: 3qsp B: [184612]
    automated match to d2nvpa1
    complexed with edo
Raoultella ornithinolytica [TaxId:54291] [320307] (1 PDB entry)
- Domain for 5czl:
  - Domain d5czla_: 5czl A: [320308]
    automated match to d1wzza1
    complexed with po4
Rhodothermus marinus [TaxId:29549] [230219] (4 PDB entries)
1. Domain for 3wkf:
  - Domain d3wkfa_: 3wkf A: [233976]
    automated match to d3wkga_
    complexed with cl, po4
2. Domain for 3wkg:
  - Domain d3wkga_: 3wkg A: [230220]
    automated match to d1fp3a_
    complexed with cl, po4
3. Domain for 3wkh:
  - Domain d3wkha_: 3wkh A: [233978]
    automated match to d3wkga_
    complexed with cl, po4
4. Domain for 3wki:
  - Domain d3wkia_: 3wki A: [233977]
    automated match to d3wkga_
    complexed with cl, po4
Ruminococcus albus [TaxId:1264] [419881] (1 PDB entry)
- Domains for 3vw5:
  1. Domain d3vw5a_: 3vw5 A: [413501]
    automated match to d5zhba_
  2. Domain d3vw5b_: 3vw5 B: [413502]
    automated match to d5zhba_
  3. Domain d3vw5c_: 3vw5 C: [413503]
    automated match to d5zhba_
Spirochaeta thermophila [TaxId:665571] [367658] (1 PDB entry)
- Domains for 5zig:
  1. Domain d5ziga_: 5zig A: [367660]
    automated match to d3wkfa_
    complexed with edo
  2. Domain d5zigb_: 5zig B: [367674]
    automated match to d3wkfa_
    complexed with edo
  3. Domain d5zigc_: 5zig C: [367682]
    automated match to d3wkfa_
    complexed with edo
  4. Domain d5zigd_: 5zig D: [367659]
    automated match to d3wkfa_
    complexed with edo
Streptococcus agalactiae [TaxId:1311] [225654] (1 PDB entry)
- Domain for 2zzr:
  - Domain d2zzra_: 2zzr A: [208036]
    automated match to d2fuza_
    complexed with gol, so4
Streptococcus agalactiae [TaxId:211110] [226492] (2 PDB entries)
1. Domains for 3vxd:
  1. Domain d3vxda_: 3vxd A: [218140]
    automated match to d2fv1a_
    complexed with so4; mutant
  2. Domain d3vxdb_: 3vxd B: [218141]
    automated match to d2fv1a_
    complexed with so4; mutant
  3. Domain d3vxdc_: 3vxd C: [218142]
    automated match to d2fv1a_
    complexed with so4; mutant
  4. Domain d3vxdd_: 3vxd D: [218143]
    automated match to d2fv1a_
    complexed with so4; mutant
2. Domain for 3wux:
  - Domain d3wuxa_: 3wux A: [256522]
    automated match to d3vxdb_
    complexed with edo; mutant
Streptococcus agalactiae [TaxId:216495] [225979] (3 PDB entries)
1. Domain for 3ani:
  - Domain d3ania_: 3ani A: [208284]
    automated match to d2fuza_
    mutant
2. Domain for 3anj:
  - Domain d3anja_: 3anj A: [208285]
    automated match to d2fuza_
3. Domain for 3ank:
  - Domain d3anka_: 3ank A: [208286]
    automated match to d2fuza_
    complexed with edo; mutant
Teredinibacter turnerae [TaxId:377629] [358534] (4 PDB entries)
1. Domain for 6g00:
  - Domain d6g00a_: 6g00 A: [358542]
    automated match to d1wu4a1
    complexed with edo, na
2. Domain for 6g09:
  - Domain d6g09a_: 6g09 A: [358537]
    automated match to d1wu4a1
    complexed with edo
3. Domain for 6g0b:
  - Domain d6g0ba_: 6g0b A: [358543]
    automated match to d1wu4a1
4. Domain for 6g0n:
  - Domain d6g0na_: 6g0n A: [358535]
    automated match to d2drra_
    complexed with gol, xyp; mutant
Worm (Eisenia fetida) [TaxId:6396] [256152] (1 PDB entry)
- Domain for 3wc3:
  - Domain d3wc3a1: 3wc3 A:22-455 [250740]
    Other proteins in same PDB: d3wc3a2
    automated match to d1ks8a_
    complexed with ca, flc, gol, na, trs
Xylella fastidiosa [TaxId:405441] [419846] (1 PDB entry)
- Domain for 3gt5:
  - Domain d3gt5a1: 3gt5 A:11-399 [413200]
    Other proteins in same PDB: d3gt5a2
    automated match to d5x32b_
    complexed with cl

More info for Protein automated matches from a.102.1.0: automated matches

Timeline for Protein automated matches from a.102.1.0: automated matches:

Protein automated matches from a.102.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from a.102.1.0: automated matches appears in SCOPe 2.07