Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2167645Fold d.38: Thioesterase/thiol ester dehydrase-isomerase [54636] (1 superfamily)
    core: beta-alpha-beta(4); 2 layers: alpha/beta
  4. 2167646Superfamily d.38.1: Thioesterase/thiol ester dehydrase-isomerase [54637] (9 families) (S)
  5. 2167937Family d.38.1.5: PaaI/YdiI-like [89902] (15 protein domains)
  6. 2168048Protein automated matches [190102] (7 species)
    not a true protein

Species:

  1. 2168049Arthrobacter sp. [TaxId:1667] [194804] (11 PDB entries)
    1. Domains for 3r32:
      1. 2168060Domain d3r32a_: 3r32 A: [195713]
        automated match to d1q4ta_
        complexed with 4co; mutant
      2. 2168061Domain d3r32b_: 3r32 B: [195712]
        automated match to d1q4ta_
        complexed with 4co; mutant
    2. Domains for 3r34:
      1. 2168054Domain d3r34a_: 3r34 A: [195717]
        automated match to d1q4ta_
        complexed with coa, edo; mutant
      2. 2168055Domain d3r34b_: 3r34 B: [195716]
        automated match to d1q4ta_
        complexed with coa, edo; mutant
    3. Domains for 3r35:
      1. 2168066Domain d3r35a_: 3r35 A: [195715]
        automated match to d1q4ta_
        complexed with 4co; mutant
      2. 2168067Domain d3r35b_: 3r35 B: [195714]
        automated match to d1q4ta_
        complexed with 4co; mutant
    4. Domains for 3r36:
      1. 2168070Domain d3r36a_: 3r36 A: [215561]
        automated match to d3r37b_
        complexed with phb; mutant
      2. 2168071Domain d3r36b_: 3r36 B: [215562]
        automated match to d3r37b_
        complexed with phb; mutant
    5. Domains for 3r37:
      1. 2168064Domain d3r37a_: 3r37 A: [195707]
        automated match to d1q4ta_
        complexed with 4co; mutant
      2. 2168065Domain d3r37b_: 3r37 B: [195706]
        automated match to d1q4ta_
        complexed with 4co; mutant
    6. Domains for 3r3a:
      1. 2168052Domain d3r3aa_: 3r3a A: [215563]
        automated match to d3r3ba_
        complexed with coa, phb; mutant
      2. 2168053Domain d3r3ab_: 3r3a B: [215564]
        automated match to d3r3bb_
        complexed with coa, phb; mutant
    7. Domains for 3r3b:
      1. 2168058Domain d3r3ba_: 3r3b A: [195703]
        automated match to d1q4ta_
        complexed with 4co; mutant
      2. 2168059Domain d3r3bb_: 3r3b B: [195702]
        automated match to d1q4ta_
        complexed with 4co; mutant
    8. Domains for 3r3c:
      1. 2168062Domain d3r3ca_: 3r3c A: [195705]
        automated match to d1q4ta_
        complexed with 4co; mutant
      2. 2168063Domain d3r3cb_: 3r3c B: [195704]
        automated match to d1q4ta_
        complexed with 4co; mutant
    9. Domains for 3r3d:
      1. 2168056Domain d3r3da_: 3r3d A: [195708]
        automated match to d1q4ta_
        complexed with 4co; mutant
      2. 2168057Domain d3r3db_: 3r3d B: [195709]
        automated match to d1q4ta_
        complexed with 4co; mutant
    10. Domains for 3r3f:
      1. 2168050Domain d3r3fa_: 3r3f A: [195711]
        automated match to d1q4ta_
        complexed with 4co; mutant
      2. 2168051Domain d3r3fb_: 3r3f B: [195710]
        automated match to d1q4ta_
        complexed with 4co; mutant
    11. Domains for 3tea:
      1. 2168068Domain d3teaa_: 3tea A: [194805]
        automated match to d1q4ta_
        complexed with 4co; mutant
      2. 2168069Domain d3teab_: 3tea B: [200795]
        automated match to d3teaa_
        complexed with 4co; mutant
  2. 2168072Escherichia coli [TaxId:83333] [257785] (2 PDB entries)
    1. Domains for 4k4c:
      1. 2168073Domain d4k4ca_: 4k4c A: [257786]
        automated match to d1vh9a_
        complexed with 0fq
      2. 2168074Domain d4k4cb_: 4k4c B: [257787]
        automated match to d1vh9a_
        complexed with 0fq
      3. 2168075Domain d4k4cc_: 4k4c C: [257789]
        automated match to d1vh9a_
        complexed with 0fq
      4. 2168076Domain d4k4cd_: 4k4c D: [257788]
        automated match to d1vh9a_
        complexed with 0fq
    2. Domains for 4k4d:
      1. 2168077Domain d4k4da_: 4k4d A: [259068]
        automated match to d1vh9a_
        complexed with act, hfq, mli
      2. 2168078Domain d4k4db_: 4k4d B: [262793]
        automated match to d4k4ca_
        complexed with act, hfq, mli
  3. 2168079Haemophilus influenzae [TaxId:727] [186964] (1 PDB entry)
  4. 2168088Human (Homo sapiens) [TaxId:9606] [187682] (2 PDB entries)
    1. Domains for 2f0x:
      1. 2168097Domain d2f0xb_: 2f0x B: [132674]
        Other proteins in same PDB: d2f0xa1
        automated match to d2f0xa1
        complexed with so4
      2. 2168098Domain d2f0xc_: 2f0x C: [132675]
        Other proteins in same PDB: d2f0xa1
        automated match to d2f0xa1
        complexed with so4
      3. 2168099Domain d2f0xd_: 2f0x D: [132676]
        Other proteins in same PDB: d2f0xa1
        automated match to d2f0xa1
        complexed with so4
      4. 2168100Domain d2f0xe_: 2f0x E: [132677]
        Other proteins in same PDB: d2f0xa1
        automated match to d2f0xa1
        complexed with so4
      5. 2168101Domain d2f0xf_: 2f0x F: [132678]
        Other proteins in same PDB: d2f0xa1
        automated match to d2f0xa1
        complexed with so4
      6. 2168102Domain d2f0xg_: 2f0x G: [132679]
        Other proteins in same PDB: d2f0xa1
        automated match to d2f0xa1
        complexed with so4
      7. 2168103Domain d2f0xh_: 2f0x H: [132680]
        Other proteins in same PDB: d2f0xa1
        automated match to d2f0xa1
        complexed with so4
    2. Domains for 3f5o:
      1. 2168089Domain d3f5oa_: 3f5o A: [175478]
        automated match to d2f0xa1
        complexed with cl, coa, p6g, uoc
      2. 2168090Domain d3f5ob_: 3f5o B: [175479]
        automated match to d2f0xa1
        complexed with cl, coa, p6g, uoc
      3. 2168091Domain d3f5oc_: 3f5o C: [175480]
        automated match to d2f0xa1
        complexed with cl, coa, p6g, uoc
      4. 2168092Domain d3f5od_: 3f5o D: [175481]
        automated match to d2f0xa1
        complexed with cl, coa, p6g, uoc
      5. 2168093Domain d3f5oe_: 3f5o E: [175482]
        automated match to d2f0xa1
        complexed with cl, coa, p6g, uoc
      6. 2168094Domain d3f5of_: 3f5o F: [175483]
        automated match to d2f0xa1
        complexed with cl, coa, p6g, uoc
      7. 2168095Domain d3f5og_: 3f5o G: [175484]
        automated match to d2f0xa1
        complexed with cl, coa, p6g, uoc
      8. 2168096Domain d3f5oh_: 3f5o H: [175485]
        automated match to d2f0xa1
        complexed with cl, coa, p6g, uoc
  5. 2168104Mouse (Mus musculus) [TaxId:10090] [187583] (1 PDB entry)
  6. 2168106Thermus thermophilus HB8 [TaxId:300852] [186824] (5 PDB entries)
    1. Domain for 1wlu:
    2. Domains for 1wlv:
      1. 2168110Domain d1wlva_: 1wlv A: [121016]
        automated match to d1j1ya_
        complexed with act, cl, coa
      2. 2168111Domain d1wlvb_: 1wlv B: [121017]
        automated match to d1j1ya_
        complexed with act, cl, coa
      3. 2168112Domain d1wlvc_: 1wlv C: [121018]
        automated match to d1j1ya_
        complexed with act, cl, coa
      4. 2168113Domain d1wlvd_: 1wlv D: [121019]
        automated match to d1j1ya_
        complexed with act, cl, coa
      5. 2168114Domain d1wlve_: 1wlv E: [121020]
        automated match to d1j1ya_
        complexed with act, cl, coa
      6. 2168115Domain d1wlvf_: 1wlv F: [121021]
        automated match to d1j1ya_
        complexed with act, cl, coa
      7. 2168116Domain d1wlvg_: 1wlv G: [121022]
        automated match to d1j1ya_
        complexed with act, cl, coa
      8. 2168117Domain d1wlvh_: 1wlv H: [121023]
        automated match to d1j1ya_
        complexed with act, cl, coa
    3. Domains for 1wm6:
      1. 2168126Domain d1wm6a_: 1wm6 A: [121029]
        automated match to d1j1ya_
        complexed with cl
      2. 2168127Domain d1wm6b_: 1wm6 B: [121030]
        automated match to d1j1ya_
        complexed with cl
      3. 2168128Domain d1wm6c_: 1wm6 C: [121031]
        automated match to d1j1ya_
        complexed with cl
      4. 2168129Domain d1wm6d_: 1wm6 D: [121032]
        automated match to d1j1ya_
        complexed with cl
      5. 2168130Domain d1wm6e_: 1wm6 E: [121033]
        automated match to d1j1ya_
        complexed with cl
      6. 2168131Domain d1wm6f_: 1wm6 F: [121034]
        automated match to d1j1ya_
        complexed with cl
      7. 2168132Domain d1wm6g_: 1wm6 G: [121035]
        automated match to d1j1ya_
        complexed with cl
      8. 2168133Domain d1wm6h_: 1wm6 H: [121036]
        automated match to d1j1ya_
        complexed with cl
    4. Domains for 1wn3:
      1. 2168118Domain d1wn3a_: 1wn3 A: [121074]
        automated match to d1j1ya_
        complexed with act, cl, hxc
      2. 2168119Domain d1wn3b_: 1wn3 B: [121075]
        automated match to d1j1ya_
        complexed with act, cl, hxc
      3. 2168120Domain d1wn3c_: 1wn3 C: [121076]
        automated match to d1j1ya_
        complexed with act, cl, hxc
      4. 2168121Domain d1wn3d_: 1wn3 D: [121077]
        automated match to d1j1ya_
        complexed with act, cl, hxc
      5. 2168122Domain d1wn3e_: 1wn3 E: [121078]
        automated match to d1j1ya_
        complexed with act, cl, hxc
      6. 2168123Domain d1wn3f_: 1wn3 F: [121079]
        automated match to d1j1ya_
        complexed with act, cl, hxc
      7. 2168124Domain d1wn3g_: 1wn3 G: [121080]
        automated match to d1j1ya_
        complexed with act, cl, hxc
      8. 2168125Domain d1wn3h_: 1wn3 H: [121081]
        automated match to d1j1ya_
        complexed with act, cl, hxc
    5. Domains for 2dsl:
      1. 2168108Domain d2dsla_: 2dsl A: [163681]
        automated match to d1j1ya_
        complexed with cl, mg; mutant
      2. 2168109Domain d2dslb_: 2dsl B: [163682]
        automated match to d1j1ya_
        complexed with cl, mg; mutant
  7. 2168134Zebrafish (Danio rerio) [TaxId:7955] [311409] (1 PDB entry)

More info for Protein automated matches from d.38.1.5: PaaI/YdiI-like

Timeline for Protein automated matches from d.38.1.5: PaaI/YdiI-like: