SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
Fold d.211: beta-hairpin-alpha-hairpin repeat [74651] (2 superfamilies)
multiple repeats of beta(2)-alpha(2) motif
Superfamily d.211.1: Ankyrin repeat [48403] (2 families)
repeats organized in elongated structures
Family d.211.1.1: Ankyrin repeat [48404] (19 proteins)
this is a repeat family; one repeat unit is 1ixv A:101-134 found in domain
Protein automated matches [190101] (7 species)
not a true protein

Species:

Artificial gene [TaxId:32630] [193962] (5 PDB entries)
1. Domain for 3hg0:
  - Domain d3hg0d1: 3hg0 D:13-135 [232467]
    Other proteins in same PDB: d3hg0a1, d3hg0a2, d3hg0b1, d3hg0c1, d3hg0c2, d3hg0d2
    automated match to d1awcb_
2. Domains for 4drx:
  1. Domain d4drxe_: 4drx E: [219987]
    Other proteins in same PDB: d4drxa1, d4drxa2, d4drxb1, d4drxb2, d4drxc1, d4drxc2, d4drxd1, d4drxd2
    automated match to d4duia_
    complexed with gtp, mg
  2. Domain d4drxf_: 4drx F: [219988]
    Other proteins in same PDB: d4drxa1, d4drxa2, d4drxb1, d4drxb2, d4drxc1, d4drxc2, d4drxd1, d4drxd2
    automated match to d4duia_
    complexed with gtp, mg
3. Domain for 4dui:
  - Domain d4duia1: 4dui A:13-169 [193963]
    Other proteins in same PDB: d4duia2
    automated match to d3q9nd_
    complexed with mpd, mrd
4. Domain for 4f6r:
  - Domain d4f6rd1: 4f6r D:13-169 [194939]
    Other proteins in same PDB: d4f6ra1, d4f6ra2, d4f6rb1, d4f6rb2, d4f6rd2
    automated match to d3q9nd_
    complexed with gdp, gtp, mes, mg, so4
5. Domain for 4lnu:
  - Domain d4lnud_: 4lnu D: [261349]
    Other proteins in same PDB: d4lnua1, d4lnua2, d4lnub1, d4lnub2
    automated match to d4duia_
    complexed with gdp, gol, gtp, mes, mg, so4
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186823] (3 PDB entries)
1. Domain for 1wg0:
  - Domain d1wg0a2: 1wg0 A:1-228 [120971]
    Other proteins in same PDB: d1wg0a3
    automated match to d1ixva_
2. Domains for 2dzn:
  1. Domain d2dzna_: 2dzn A: [146617]
    automated match to d1ixva_
  2. Domain d2dznc_: 2dzn C: [146618]
    automated match to d1ixva_
  3. Domain d2dzne_: 2dzn E: [146619]
    automated match to d1ixva_
3. Domains for 2dzo:
  1. Domain d2dzoa_: 2dzo A: [146620]
    automated match to d2dznc_
  2. Domain d2dzoc_: 2dzo C: [146621]
    automated match to d2dznc_
Escherichia coli [TaxId:562] [189927] (3 PDB entries)
1. Domains for 3q9n:
  1. Domain d3q9nc_: 3q9n C: [184292]
    Other proteins in same PDB: d3q9na_, d3q9nb_
    automated match to d1awcb_
    complexed with cms, coa
  2. Domain d3q9nd_: 3q9n D: [184293]
    Other proteins in same PDB: d3q9na_, d3q9nb_
    automated match to d1awcb_
    complexed with cms, coa
2. Domains for 3q9u:
  1. Domain d3q9uc_: 3q9u C: [184296]
    Other proteins in same PDB: d3q9ua_, d3q9ub_
    automated match to d1awcb_
    complexed with coa
  2. Domain d3q9ud_: 3q9u D: [184297]
    Other proteins in same PDB: d3q9ua_, d3q9ub_
    automated match to d1awcb_
    complexed with coa
3. Domains for 4k5c:
  1. Domain d4k5ca_: 4k5c A: [228954]
    automated match to d4duia_
  2. Domain d4k5cb_: 4k5c B: [228958]
    automated match to d4duia_

Human (Homo sapiens) [TaxId:9606] [187689] (13 PDB entries)

Domains for 1yyh:
1. Domain d1yyha1: 1yyh A:52-243 [241086]
  Other proteins in same PDB: d1yyha2
  automated match to d2f8ya_
2. Domain d1yyhb_: 1yyh B: [241087]
  Other proteins in same PDB: d1yyha2
  automated match to d2f8ya_
Domains for 2f8y:
1. Domain d2f8ya_: 2f8y A: [164284]
  automated match to d1ot8a_
  complexed with so4
2. Domain d2f8yb_: 2f8y B: [164285]
  automated match to d1ot8a_
  complexed with so4
Domains for 2he0:
1. Domain d2he0a1: 2he0 A:50-243 [242026]
  Other proteins in same PDB: d2he0a2, d2he0b2
  automated match to d2f8yb_
  complexed with edo; mutant
2. Domain d2he0b1: 2he0 B:52-243 [242027]
  Other proteins in same PDB: d2he0a2, d2he0b2
  automated match to d2f8yb_
  complexed with edo; mutant
Domain for 3aaa:
- Domain d3aaac_: 3aaa C: [171906]
  Other proteins in same PDB: d3aaaa_, d3aaab_
  automated match to d1myoa_
  complexed with ipa
Domains for 3c5r:
1. Domain d3c5ra2: 3c5r A:425-546 [155949]
  Other proteins in same PDB: d3c5ra3, d3c5rb2
  automated match to d3hg0d_
2. Domain d3c5rb1: 3c5r B:425-545 [239170]
  Other proteins in same PDB: d3c5ra3, d3c5rb2
  automated match to d3hg0d_

Domains for 4a63:

Domain d4a63b1: 4a63 B:920-1055 [234034]
Other proteins in same PDB: d4a63a1, d4a63a2, d4a63b2, d4a63c1, d4a63c2, d4a63d2, d4a63e1, d4a63e2, d4a63f2, d4a63g1, d4a63g2, d4a63h2, d4a63i1, d4a63i2, d4a63j2, d4a63k1, d4a63k2, d4a63l2
automated match to d1ycsb1
complexed with act, zn

Domain d4a63d1: 4a63 D:925-1055 [234036]
Other proteins in same PDB: d4a63a1, d4a63a2, d4a63b2, d4a63c1, d4a63c2, d4a63d2, d4a63e1, d4a63e2, d4a63f2, d4a63g1, d4a63g2, d4a63h2, d4a63i1, d4a63i2, d4a63j2, d4a63k1, d4a63k2, d4a63l2
automated match to d1ycsb1
complexed with act, zn

Domain d4a63f1: 4a63 F:925-1055 [234032]
Other proteins in same PDB: d4a63a1, d4a63a2, d4a63b2, d4a63c1, d4a63c2, d4a63d2, d4a63e1, d4a63e2, d4a63f2, d4a63g1, d4a63g2, d4a63h2, d4a63i1, d4a63i2, d4a63j2, d4a63k1, d4a63k2, d4a63l2
automated match to d1ycsb1
complexed with act, zn

Domain d4a63h1: 4a63 H:923-1055 [234040]
Other proteins in same PDB: d4a63a1, d4a63a2, d4a63b2, d4a63c1, d4a63c2, d4a63d2, d4a63e1, d4a63e2, d4a63f2, d4a63g1, d4a63g2, d4a63h2, d4a63i1, d4a63i2, d4a63j2, d4a63k1, d4a63k2, d4a63l2
automated match to d1ycsb1
complexed with act, zn

Domain d4a63j1: 4a63 J:923-1055 [234038]
Other proteins in same PDB: d4a63a1, d4a63a2, d4a63b2, d4a63c1, d4a63c2, d4a63d2, d4a63e1, d4a63e2, d4a63f2, d4a63g1, d4a63g2, d4a63h2, d4a63i1, d4a63i2, d4a63j2, d4a63k1, d4a63k2, d4a63l2
automated match to d1ycsb1
complexed with act, zn

Domain d4a63l1: 4a63 L:925-1055 [239964]
Other proteins in same PDB: d4a63a1, d4a63a2, d4a63b2, d4a63c1, d4a63c2, d4a63d2, d4a63e1, d4a63e2, d4a63f2, d4a63g1, d4a63g2, d4a63h2, d4a63i1, d4a63i2, d4a63j2, d4a63k1, d4a63k2, d4a63l2
automated match to d4a63f1
complexed with act, zn

Domain for 4zfh:
- Domain d4zfha_: 4zfh A: [316183]
  automated match to d4drxe_
  complexed with mg; mutant
Domain for 5o2t:
- Domain d5o2tb1: 5o2t B:23-160 [337084]
  Other proteins in same PDB: d5o2ta_, d5o2tb2
  automated match to d4drxe_
  complexed with gsp, mg, so4
Domains for 6ghm:
1. Domain d6ghmc1: 6ghm C:920-1055 [365319]
  Other proteins in same PDB: d6ghmc2, d6ghmd2
  automated match to d4a63d1
  complexed with edo, gol, mn, nhe
2. Domain d6ghmd1: 6ghm D:920-1055 [365279]
  Other proteins in same PDB: d6ghmc2, d6ghmd2
  automated match to d4a63d1
  complexed with edo, gol, mn, nhe
Domain for 6h46:
- Domain d6h46b_: 6h46 B: [368105]
  Other proteins in same PDB: d6h46a1, d6h46a2
  automated match to d4drxe_
  complexed with gdp, so4
Domain for 6h47:
- Domain d6h47b1: 6h47 B:2-154 [368084]
  Other proteins in same PDB: d6h47a_, d6h47b2
  automated match to d4drxe_
  complexed with so4
Domains for 7df7:
1. Domain d7df7a_: 7df7 A: [398834]
  Other proteins in same PDB: d7df7b2
  automated match to d2kxpc_
2. Domain d7df7b1: 7df7 B:1-117 [398820]
  Other proteins in same PDB: d7df7b2
  automated match to d2kxpc_
Domain for 7dsa:
- Domain d7dsac_: 7dsa C: [398891]
  Other proteins in same PDB: d7dsaa_, d7dsab_
  automated match to d2kxpc_
  complexed with mg

Mouse (Mus musculus) [TaxId:10090] [187645] (3 PDB entries)
1. Domains for 1ymp:
  1. Domain d1ympa_: 1ymp A: [241046]
    automated match to d3hg0d_
  2. Domain d1ympb_: 1ymp B: [241047]
    automated match to d3hg0d_
2. Domains for 2dwz:
  1. Domain d2dwza_: 2dwz A: [163731]
    automated match to d1tr4a_
    complexed with epe
  2. Domain d2dwzc_: 2dwz C: [163732]
    automated match to d1tr4a_
    complexed with epe
3. Domains for 2qc9:
  1. Domain d2qc9a_: 2qc9 A: [167517]
    automated match to d1ot8a_
  2. Domain d2qc9b_: 2qc9 B: [167518]
    automated match to d1ot8a_
Ribosome display [TaxId:248461] [316617] (1 PDB entry)
- Domains for 5en5:
  1. Domain d5en5d1: 5en5 D:13-166 [316618]
    Other proteins in same PDB: d5en5d2, d5en5e2, d5en5f2
    automated match to d4drxe_
  2. Domain d5en5e1: 5en5 E:13-166 [316620]
    Other proteins in same PDB: d5en5d2, d5en5e2, d5en5f2
    automated match to d4drxe_
  3. Domain d5en5f1: 5en5 F:13-166 [316622]
    Other proteins in same PDB: d5en5d2, d5en5e2, d5en5f2
    automated match to d4drxe_
Thale cress (Arabidopsis thaliana) [TaxId:3702] [161332] (2 PDB entries)
1. Domain for 3deo:
  - Domain d3deoa2: 3deo A:130-218 [157593]
    Other proteins in same PDB: d3deoa1
    automatically matched to d1n0qb_
    complexed with mg
2. Domain for 3dep:
  - Domain d3depa2: 3dep A:130-218 [157595]
    Other proteins in same PDB: d3depa1
    automatically matched to d1n0qb_
    complexed with cl

More info for Protein automated matches from d.211.1.1: Ankyrin repeat

Timeline for Protein automated matches from d.211.1.1: Ankyrin repeat:

Protein automated matches from d.211.1.1: Ankyrin repeat first appeared in SCOPe 2.01
Protein automated matches from d.211.1.1: Ankyrin repeat appears in SCOPe 2.06
Protein automated matches from d.211.1.1: Ankyrin repeat appears in the current release, SCOPe 2.08