Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1815292Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1818156Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 1818157Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain
  6. 1818647Protein automated matches [190099] (22 species)
    not a true protein

Species:

  1. 1818648Arabidopsis thaliana [TaxId:3702] [278910] (6 PDB entries)
    1. Domains for 5cpq:
      1. 1818653Domain d5cpqa_: 5cpq A: [278915]
        automated match to d1x1na1
        complexed with edo
      2. 1818654Domain d5cpqb_: 5cpq B: [278918]
        automated match to d1x1na1
        complexed with edo
    2. Domains for 5cps:
      1. 1818649Domain d5cpsa_: 5cps A: [278913]
        automated match to d1x1na1
        complexed with edo, glc
      2. 1818650Domain d5cpsb_: 5cps B: [278914]
        automated match to d1x1na1
        complexed with edo, glc
    3. Domains for 5cpt:
      1. 1818655Domain d5cpta_: 5cpt A: [278912]
        automated match to d1x1na1
        complexed with bgc, edo, glc
      2. 1818656Domain d5cptb_: 5cpt B: [278911]
        automated match to d1x1na1
        complexed with bgc, edo, glc
    4. Domains for 5cq1:
      1. 1818657Domain d5cq1a_: 5cq1 A: [278920]
        automated match to d1x1na1
        complexed with bgc, edo, glc
      2. 1818658Domain d5cq1b_: 5cq1 B: [278919]
        automated match to d1x1na1
        complexed with bgc, edo, glc
    5. Domains for 5csu:
      1. 1818659Domain d5csua_: 5csu A: [278927]
        automated match to d1x1na1
        complexed with agl, bgc, edo, glc, hmc
      2. 1818660Domain d5csub_: 5csu B: [278923]
        automated match to d1x1na1
        complexed with agl, bgc, edo, glc, hmc
    6. Domains for 5csy:
      1. 1818651Domain d5csya_: 5csy A: [278922]
        automated match to d1x1na1
        complexed with acr, bgc, edo, glc
      2. 1818652Domain d5csyb_: 5csy B: [278917]
        automated match to d1x1na1
        complexed with acr, bgc, edo, glc
  2. Bacillus cereus [TaxId:1396] [254917] (3 PDB entries)
    1. Domain for 1ven:
    2. Domain for 1veo:
    3. Domain for 1vep:
  3. 1818665Bacillus halmapalus [TaxId:79882] [255187] (2 PDB entries)
    1. Domain for 2gjp:
    2. Domain for 2gjr:
  4. 1818668Bacillus sp. [225222] (1 PDB entry)
  5. 1818670Bacillus sp. [TaxId:535911] [225472] (1 PDB entry)
  6. 1818672Bacillus subtilis [TaxId:224308] [228099] (4 PDB entries)
    1. Domains for 4m56:
      1. 1818676Domain d4m56a1: 4m56 A:3-482 [228100]
        Other proteins in same PDB: d4m56a2, d4m56b2
        automated match to d1uoka2
        complexed with glo, gol, so4
      2. 1818677Domain d4m56b1: 4m56 B:3-482 [235529]
        Other proteins in same PDB: d4m56a2, d4m56b2
        automated match to d4m56a1
        complexed with glo, gol, so4
    2. Domain for 4m8u:
    3. Domain for 4maz:
    4. Domain for 4mb1:
  7. 1818678Barley (Hordeum vulgare) [TaxId:4513] [255684] (8 PDB entries)
    1. Domain for 2xff:
    2. Domain for 2xfr:
    3. Domain for 2xfy:
    4. Domain for 2xg9:
    5. Domain for 2xgb:
    6. Domain for 2xgi:
    7. Domain for 3bsg:
    8. Domain for 3bsh:
  8. 1818687Bifidobacterium adolescentis [TaxId:1680] [255183] (1 PDB entry)
  9. 1818690Escherichia coli [TaxId:562] [270950] (2 PDB entries)
    1. Domains for 4lpc:
      1. 1818691Domain d4lpca2: 4lpc A:227-622 [270970]
        Other proteins in same PDB: d4lpca1, d4lpca3, d4lpcb1, d4lpcb3, d4lpcc1, d4lpcc3, d4lpcd1, d4lpcd3
        automated match to d1m7xa3
        complexed with bgc, gol
      2. 1818692Domain d4lpcb2: 4lpc B:227-622 [270952]
        Other proteins in same PDB: d4lpca1, d4lpca3, d4lpcb1, d4lpcb3, d4lpcc1, d4lpcc3, d4lpcd1, d4lpcd3
        automated match to d1m7xa3
        complexed with bgc, gol
      3. 1818693Domain d4lpcc2: 4lpc C:227-622 [270969]
        Other proteins in same PDB: d4lpca1, d4lpca3, d4lpcb1, d4lpcb3, d4lpcc1, d4lpcc3, d4lpcd1, d4lpcd3
        automated match to d1m7xa3
        complexed with bgc, gol
      4. 1818694Domain d4lpcd2: 4lpc D:227-622 [270951]
        Other proteins in same PDB: d4lpca1, d4lpca3, d4lpcb1, d4lpcb3, d4lpcc1, d4lpcc3, d4lpcd1, d4lpcd3
        automated match to d1m7xa3
        complexed with bgc, gol
    2. Domains for 4lq1:
      1. 1818695Domain d4lq1a2: 4lq1 A:227-622 [270967]
        Other proteins in same PDB: d4lq1a1, d4lq1a3, d4lq1b1, d4lq1b3, d4lq1c1, d4lq1c3, d4lq1d1, d4lq1d3
        automated match to d1m7xa3
        complexed with bgc, gol
      2. 1818696Domain d4lq1b2: 4lq1 B:227-622 [270968]
        Other proteins in same PDB: d4lq1a1, d4lq1a3, d4lq1b1, d4lq1b3, d4lq1c1, d4lq1c3, d4lq1d1, d4lq1d3
        automated match to d1m7xa3
        complexed with bgc, gol
      3. 1818697Domain d4lq1c2: 4lq1 C:227-622 [270959]
        Other proteins in same PDB: d4lq1a1, d4lq1a3, d4lq1b1, d4lq1b3, d4lq1c1, d4lq1c3, d4lq1d1, d4lq1d3
        automated match to d1m7xa3
        complexed with bgc, gol
      4. 1818698Domain d4lq1d2: 4lq1 D:227-622 [270960]
        Other proteins in same PDB: d4lq1a1, d4lq1a3, d4lq1b1, d4lq1b3, d4lq1c1, d4lq1c3, d4lq1d1, d4lq1d3
        automated match to d1m7xa3
        complexed with bgc, gol
  10. 1818699Flavobacterium sp. [TaxId:197856] [255816] (5 PDB entries)
    1. Domains for 3edd:
      1. 1818708Domain d3edda2: 3edd A:96-517 [245826]
        Other proteins in same PDB: d3edda1, d3edda3, d3eddb1, d3eddb3
        automated match to d1h3ga3
        complexed with acx, ca
      2. 1818709Domain d3eddb2: 3edd B:96-517 [245829]
        Other proteins in same PDB: d3edda1, d3edda3, d3eddb1, d3eddb3
        automated match to d1h3ga3
        complexed with acx, ca
    2. Domains for 3ede:
      1. 1818704Domain d3edea2: 3ede A:96-517 [245832]
        Other proteins in same PDB: d3edea1, d3edea3, d3edeb1, d3edeb3
        automated match to d1h3ga3
        complexed with ca, gol
      2. 1818705Domain d3edeb2: 3ede B:96-517 [245835]
        Other proteins in same PDB: d3edea1, d3edea3, d3edeb1, d3edeb3
        automated match to d1h3ga3
        complexed with ca, gol
    3. Domains for 3edf:
      1. 1818700Domain d3edfa2: 3edf A:96-517 [245838]
        Other proteins in same PDB: d3edfa1, d3edfa3, d3edfb1, d3edfb3
        automated match to d1h3ga3
        complexed with acx, ca, ce6, gol
      2. 1818701Domain d3edfb2: 3edf B:96-517 [245841]
        Other proteins in same PDB: d3edfa1, d3edfa3, d3edfb1, d3edfb3
        automated match to d1h3ga3
        complexed with acx, ca, ce6, gol
    4. Domains for 3edj:
      1. 1818702Domain d3edja2: 3edj A:96-517 [245844]
        Other proteins in same PDB: d3edja1, d3edja3, d3edjb1, d3edjb3
        automated match to d1h3ga3
        complexed with bcd, ca, gol
      2. 1818703Domain d3edjb2: 3edj B:96-517 [245847]
        Other proteins in same PDB: d3edja1, d3edja3, d3edjb1, d3edjb3
        automated match to d1h3ga3
        complexed with bcd, ca, gol
    5. Domains for 3edk:
      1. 1818706Domain d3edka2: 3edk A:96-517 [245850]
        Other proteins in same PDB: d3edka1, d3edka3, d3edkb1, d3edkb3
        automated match to d1h3ga3
        complexed with ca, ce8, gol
      2. 1818707Domain d3edkb2: 3edk B:96-517 [245853]
        Other proteins in same PDB: d3edka1, d3edka3, d3edkb1, d3edkb3
        automated match to d1h3ga3
        complexed with ca, ce8, gol
  11. 1818710Human (Homo sapiens) [TaxId:9606] [225770] (13 PDB entries)
    1. Domain for 1xgz:
    2. Domain for 1xh0:
    3. Domain for 1xh1:
    4. Domain for 1xh2:
    5. Domains for 1xv8:
      1. 1818730Domain d1xv8a2: 1xv8 A:1-408 [122341]
        Other proteins in same PDB: d1xv8a1, d1xv8b1
        automated match to d1jxka2
        complexed with ca, cl
      2. 1818731Domain d1xv8b2: 1xv8 B:1-408 [122343]
        Other proteins in same PDB: d1xv8a1, d1xv8b1
        automated match to d1jxka2
        complexed with ca, cl
    6. Domain for 3dhp:
    7. Domains for 3h53:
      1. 1818718Domain d3h53a1: 3h53 A:18-309 [210879]
        Other proteins in same PDB: d3h53a2, d3h53b2
        automated match to d1ktba2
        complexed with gol, nag
      2. 1818719Domain d3h53b1: 3h53 B:18-309 [210881]
        Other proteins in same PDB: d3h53a2, d3h53b2
        automated match to d1ktba2
        complexed with gol, nag
    8. Domains for 3h54:
      1. 1818727Domain d3h54a1: 3h54 A:18-309 [210883]
        Other proteins in same PDB: d3h54a2, d3h54b2
        automated match to d1ktba2
        complexed with a2g, gol, nag
      2. 1818728Domain d3h54b1: 3h54 B:18-309 [210885]
        Other proteins in same PDB: d3h54a2, d3h54b2
        automated match to d1ktba2
        complexed with a2g, gol, nag
    9. Domains for 3h55:
      1. 1818722Domain d3h55a1: 3h55 A:18-309 [210887]
        Other proteins in same PDB: d3h55a2, d3h55b2
        automated match to d1ktba2
        complexed with cit, gla, nag
      2. 1818723Domain d3h55b1: 3h55 B:18-309 [210889]
        Other proteins in same PDB: d3h55a2, d3h55b2
        automated match to d1ktba2
        complexed with cit, gla, nag
    10. Domains for 3igu:
      1. 1818724Domain d3igua1: 3igu A:18-309 [211679]
        Other proteins in same PDB: d3igua2, d3igub2
        automated match to d1ktba2
        complexed with 7jz, gol, nag
      2. 1818725Domain d3igub1: 3igu B:18-309 [211681]
        Other proteins in same PDB: d3igua2, d3igub2
        automated match to d1ktba2
        complexed with 7jz, gol, nag
    11. Domains for 4do4:
      1. 1818711Domain d4do4a1: 4do4 A:18-309 [219884]
        Other proteins in same PDB: d4do4a2, d4do4b2
        automated match to d1ktba2
        complexed with acy, cit, djn, gol, nag
      2. 1818712Domain d4do4b1: 4do4 B:18-309 [219886]
        Other proteins in same PDB: d4do4a2, d4do4b2
        automated match to d1ktba2
        complexed with acy, cit, djn, gol, nag
    12. Domains for 4do5:
      1. 1818713Domain d4do5a1: 4do5 A:18-309 [219888]
        Other proteins in same PDB: d4do5a2, d4do5b2
        automated match to d1ktba2
        complexed with cit, dgj, gol, nag
      2. 1818714Domain d4do5b1: 4do5 B:18-309 [219890]
        Other proteins in same PDB: d4do5a2, d4do5b2
        automated match to d1ktba2
        complexed with cit, dgj, gol, nag
    13. Domains for 4do6:
      1. 1818716Domain d4do6a1: 4do6 A:18-309 [219892]
        Other proteins in same PDB: d4do6a2, d4do6b2
        automated match to d1ktba2
        complexed with 2pe, bgc, cit, glc, nag
      2. 1818717Domain d4do6b1: 4do6 B:18-309 [219894]
        Other proteins in same PDB: d4do6a2, d4do6b2
        automated match to d1ktba2
        complexed with 2pe, bgc, cit, glc, nag
  12. 1818732Listeria monocytogenes [TaxId:169963] [277525] (1 PDB entry)
  13. 1818736Neisseria polysaccharea [TaxId:489] [226280] (5 PDB entries)
    1. Domain for 3ueq:
    2. Domain for 4flo:
    3. Domain for 4flq:
    4. Domain for 4flr:
    5. Domain for 4fls:
  14. 1818742Oryzias latipes [TaxId:8090] [226401] (1 PDB entry)
  15. 1818744Pig (Sus scrofa) [TaxId:9823] [225875] (3 PDB entries)
    1. Domain for 1vah:
    2. Domain for 3l2l:
    3. Domain for 3l2m:
  16. 1818748Protaminobacter rubrum [TaxId:126825] [225680] (2 PDB entries)
    1. Domain for 3gbd:
    2. Domain for 3gbe:
  17. 1818751Pseudomonas mesoacidophila [TaxId:265293] [224875] (9 PDB entries)
    1. Domains for 1zja:
      1. 1818752Domain d1zjaa1: 1zja A:1-478 [203330]
        Other proteins in same PDB: d1zjaa2, d1zjab2
        automated match to d1m53a2
        complexed with ca, trs
      2. 1818753Domain d1zjab1: 1zja B:1-478 [203332]
        Other proteins in same PDB: d1zjaa2, d1zjab2
        automated match to d1m53a2
        complexed with ca, trs
    2. Domains for 1zjb:
      1. 1818756Domain d1zjba1: 1zjb A:2-478 [203334]
        Other proteins in same PDB: d1zjba2, d1zjbb2
        automated match to d1m53a2
        complexed with ca, trs
      2. 1818757Domain d1zjbb1: 1zjb B:2-478 [203336]
        Other proteins in same PDB: d1zjba2, d1zjbb2
        automated match to d1m53a2
        complexed with ca, trs
    3. Domains for 2pwd:
      1. 1818754Domain d2pwda1: 2pwd A:1-478 [205664]
        Other proteins in same PDB: d2pwda2, d2pwdb2
        automated match to d1m53a2
        complexed with ca, noj
      2. 1818755Domain d2pwdb1: 2pwd B:1-478 [205666]
        Other proteins in same PDB: d2pwda2, d2pwdb2
        automated match to d1m53a2
        complexed with ca, noj
    4. Domains for 2pwe:
      1. 1818764Domain d2pwea1: 2pwe A:2-478 [205668]
        Other proteins in same PDB: d2pwea2, d2pweb2
        automated match to d1m53a2
        complexed with ca, suc; mutant
      2. 1818765Domain d2pweb1: 2pwe B:2-478 [205670]
        Other proteins in same PDB: d2pwea2, d2pweb2
        automated match to d1m53a2
        complexed with ca, suc; mutant
    5. Domains for 2pwf:
      1. 1818758Domain d2pwfa1: 2pwf A:3-478 [205672]
        Other proteins in same PDB: d2pwfa2, d2pwfb2, d2pwfc2, d2pwfd2
        automated match to d1m53a2
        complexed with bgc, ca; mutant
      2. 1818759Domain d2pwfb1: 2pwf B:4-478 [205674]
        Other proteins in same PDB: d2pwfa2, d2pwfb2, d2pwfc2, d2pwfd2
        automated match to d1m53a2
        complexed with bgc, ca; mutant
      3. 1818760Domain d2pwfc1: 2pwf C:2-478 [205676]
        Other proteins in same PDB: d2pwfa2, d2pwfb2, d2pwfc2, d2pwfd2
        automated match to d1m53a2
        complexed with bgc, ca; mutant
      4. 1818761Domain d2pwfd1: 2pwf D:2-478 [205678]
        Other proteins in same PDB: d2pwfa2, d2pwfb2, d2pwfc2, d2pwfd2
        automated match to d1m53a2
        complexed with bgc, ca; mutant
    6. Domains for 2pwg:
      1. 1818770Domain d2pwga1: 2pwg A:2-478 [205680]
        Other proteins in same PDB: d2pwga2, d2pwgb2
        automated match to d1m53a2
        complexed with ca, cts
      2. 1818771Domain d2pwgb1: 2pwg B:2-478 [205682]
        Other proteins in same PDB: d2pwga2, d2pwgb2
        automated match to d1m53a2
        complexed with ca, cts
    7. Domains for 2pwh:
      1. 1818762Domain d2pwha1: 2pwh A:2-478 [205684]
        Other proteins in same PDB: d2pwha2, d2pwhb2
        automated match to d1m53a2
        complexed with ca
      2. 1818763Domain d2pwhb1: 2pwh B:2-478 [205686]
        Other proteins in same PDB: d2pwha2, d2pwhb2
        automated match to d1m53a2
        complexed with ca
    8. Domains for 4go8:
      1. 1818768Domain d4go8a1: 4go8 A:4-478 [222048]
        Other proteins in same PDB: d4go8a2, d4go8b2
        automated match to d1m53a2
        complexed with ca, trs; mutant
      2. 1818769Domain d4go8b1: 4go8 B:2-478 [222050]
        Other proteins in same PDB: d4go8a2, d4go8b2
        automated match to d1m53a2
        complexed with ca, trs; mutant
    9. Domains for 4go9:
      1. 1818766Domain d4go9a1: 4go9 A:3-478 [222052]
        Other proteins in same PDB: d4go9a2, d4go9b2
        automated match to d1m53a2
        complexed with ca, trs; mutant
      2. 1818767Domain d4go9b1: 4go9 B:4-478 [222054]
        Other proteins in same PDB: d4go9a2, d4go9b2
        automated match to d1m53a2
        complexed with ca, trs; mutant
  18. 1818772Pyrococcus woesei [TaxId:2262] [226292] (1 PDB entry)
  19. 1818774Soybean (Glycine max) [TaxId:3847] [186821] (2 PDB entries)
    1. Domain for 1wdp:
    2. Domain for 2dqx:
  20. 1818777Thermoactinomyces vulgaris [TaxId:2026] [254920] (6 PDB entries)
    1. Domains for 1vfm:
      1. 1818785Domain d1vfma3: 1vfm A:121-502 [120044]
        Other proteins in same PDB: d1vfma1, d1vfma2, d1vfmb1, d1vfmb2
        automated match to d1ji2a3
        complexed with ca
      2. 1818786Domain d1vfmb3: 1vfm B:121-502 [120047]
        Other proteins in same PDB: d1vfma1, d1vfma2, d1vfmb1, d1vfmb2
        automated match to d1ji2a3
        complexed with ca
    2. Domains for 1vfo:
      1. 1818783Domain d1vfoa3: 1vfo A:121-502 [120050]
        Other proteins in same PDB: d1vfoa1, d1vfoa2, d1vfob1, d1vfob2
        automated match to d1ji2a3
        complexed with ca
      2. 1818784Domain d1vfob3: 1vfo B:121-502 [120053]
        Other proteins in same PDB: d1vfoa1, d1vfoa2, d1vfob1, d1vfob2
        automated match to d1ji2a3
        complexed with ca
    3. Domains for 1vfu:
      1. 1818787Domain d1vfua3: 1vfu A:121-502 [120057]
        Other proteins in same PDB: d1vfua1, d1vfua2, d1vfub1, d1vfub2
        automated match to d1ji2a3
        complexed with ca
      2. 1818788Domain d1vfub3: 1vfu B:121-502 [120060]
        Other proteins in same PDB: d1vfua1, d1vfua2, d1vfub1, d1vfub2
        automated match to d1ji2a3
        complexed with ca
    4. Domains for 1wzk:
      1. 1818781Domain d1wzka3: 1wzk A:121-502 [121509]
        Other proteins in same PDB: d1wzka1, d1wzka2, d1wzkb1, d1wzkb2
        automated match to d1ji2a3
        complexed with ca
      2. 1818782Domain d1wzkb3: 1wzk B:121-502 [121512]
        Other proteins in same PDB: d1wzka1, d1wzka2, d1wzkb1, d1wzkb2
        automated match to d1ji2a3
        complexed with ca
    5. Domains for 1wzl:
      1. 1818779Domain d1wzla3: 1wzl A:121-502 [121515]
        Other proteins in same PDB: d1wzla1, d1wzla2, d1wzlb1, d1wzlb2
        automated match to d1ji2a3
        complexed with ca
      2. 1818780Domain d1wzlb3: 1wzl B:121-502 [121518]
        Other proteins in same PDB: d1wzla1, d1wzla2, d1wzlb1, d1wzlb2
        automated match to d1ji2a3
        complexed with ca
    6. Domain for 2d0f:
  21. 1818789Thermus brockianus [TaxId:56956] [189542] (1 PDB entry)
  22. 1818791Thermus thermophilus [TaxId:274] [188525] (3 PDB entries)
    1. Domain for 2owc:
    2. Domain for 2oww:
    3. Domain for 2owx:

More info for Protein automated matches from c.1.8.1: Amylase, catalytic domain

Timeline for Protein automated matches from c.1.8.1: Amylase, catalytic domain: