Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1336838Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1339265Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 1339266Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain
  6. 1339758Protein automated matches [190099] (14 species)
    not a true protein

Species:

  1. 1339759Bacillus sp. [225222] (1 PDB entry)
  2. 1339761Bacillus sp. [TaxId:535911] [225472] (1 PDB entry)
  3. 1339763Bacillus subtilis [TaxId:224308] [228099] (4 PDB entries)
    1. Domains for 4m56:
      1. 1339767Domain d4m56a1: 4m56 A:3-482 [228100]
        Other proteins in same PDB: d4m56a2, d4m56b2
        automated match to d1uoka2
        complexed with glo, gol, so4
      2. 1339768Domain d4m56b1: 4m56 B:3-482 [235529]
        Other proteins in same PDB: d4m56a2, d4m56b2
        automated match to d4m56a1
        complexed with glo, gol, so4
    2. Domain for 4m8u:
    3. Domain for 4maz:
    4. Domain for 4mb1:
  4. 1339769Erwinia rhapontici [TaxId:55212] [228311] (5 PDB entries)
    1. Domain for 4how:
    2. Domain for 4hox:
    3. Domain for 4hoz:
    4. Domain for 4hp5:
    5. Domain for 4hph:
  5. 1339775Human (Homo sapiens) [TaxId:9606] [225770] (7 PDB entries)
    1. Domains for 3h53:
      1. 1339782Domain d3h53a1: 3h53 A:18-309 [210879]
        Other proteins in same PDB: d3h53a2, d3h53b2
        automated match to d1ktba2
        complexed with gol, nag
      2. 1339783Domain d3h53b1: 3h53 B:18-309 [210881]
        Other proteins in same PDB: d3h53a2, d3h53b2
        automated match to d1ktba2
        complexed with gol, nag
    2. Domains for 3h54:
      1. 1339788Domain d3h54a1: 3h54 A:18-309 [210883]
        Other proteins in same PDB: d3h54a2, d3h54b2
        automated match to d1ktba2
        complexed with a2g, gol, nag
      2. 1339789Domain d3h54b1: 3h54 B:18-309 [210885]
        Other proteins in same PDB: d3h54a2, d3h54b2
        automated match to d1ktba2
        complexed with a2g, gol, nag
    3. Domains for 3h55:
      1. 1339784Domain d3h55a1: 3h55 A:18-309 [210887]
        Other proteins in same PDB: d3h55a2, d3h55b2
        automated match to d1ktba2
        complexed with cit, gla, nag
      2. 1339785Domain d3h55b1: 3h55 B:18-309 [210889]
        Other proteins in same PDB: d3h55a2, d3h55b2
        automated match to d1ktba2
        complexed with cit, gla, nag
    4. Domains for 3igu:
      1. 1339786Domain d3igua1: 3igu A:18-309 [211679]
        Other proteins in same PDB: d3igua2, d3igub2
        automated match to d1ktba2
        complexed with 7jz, gol, nag
      2. 1339787Domain d3igub1: 3igu B:18-309 [211681]
        Other proteins in same PDB: d3igua2, d3igub2
        automated match to d1ktba2
        complexed with 7jz, gol, nag
    5. Domains for 4do4:
      1. 1339776Domain d4do4a1: 4do4 A:18-309 [219884]
        Other proteins in same PDB: d4do4a2, d4do4b2
        automated match to d1ktba2
        complexed with acy, cit, djn, gol, nag
      2. 1339777Domain d4do4b1: 4do4 B:18-309 [219886]
        Other proteins in same PDB: d4do4a2, d4do4b2
        automated match to d1ktba2
        complexed with acy, cit, djn, gol, nag
    6. Domains for 4do5:
      1. 1339778Domain d4do5a1: 4do5 A:18-309 [219888]
        Other proteins in same PDB: d4do5a2, d4do5b2
        automated match to d1ktba2
        complexed with cit, dgj, gol, nag
      2. 1339779Domain d4do5b1: 4do5 B:18-309 [219890]
        Other proteins in same PDB: d4do5a2, d4do5b2
        automated match to d1ktba2
        complexed with cit, dgj, gol, nag
    7. Domains for 4do6:
      1. 1339780Domain d4do6a1: 4do6 A:18-309 [219892]
        Other proteins in same PDB: d4do6a2, d4do6b2
        automated match to d1ktba2
        complexed with 2pe, bgc, cit, glc, nag
      2. 1339781Domain d4do6b1: 4do6 B:18-309 [219894]
        Other proteins in same PDB: d4do6a2, d4do6b2
        automated match to d1ktba2
        complexed with 2pe, bgc, cit, glc, nag
  6. 1339790Neisseria polysaccharea [TaxId:489] [226280] (5 PDB entries)
    1. Domain for 3ueq:
    2. Domain for 4flo:
    3. Domain for 4flq:
    4. Domain for 4flr:
    5. Domain for 4fls:
  7. 1339796Oryzias latipes [TaxId:8090] [226401] (1 PDB entry)
  8. 1339798Pig (Sus scrofa) [TaxId:9823] [225875] (2 PDB entries)
    1. Domain for 3l2l:
    2. Domain for 3l2m:
  9. 1339801Protaminobacter rubrum [TaxId:126825] [225680] (2 PDB entries)
    1. Domain for 3gbd:
    2. Domain for 3gbe:
  10. 1339804Pseudomonas mesoacidophila [TaxId:265293] [224875] (9 PDB entries)
    1. Domains for 1zja:
      1. 1339805Domain d1zjaa1: 1zja A:1-478 [203330]
        Other proteins in same PDB: d1zjaa2, d1zjab2
        automated match to d1m53a2
        complexed with ca, trs
      2. 1339806Domain d1zjab1: 1zja B:1-478 [203332]
        Other proteins in same PDB: d1zjaa2, d1zjab2
        automated match to d1m53a2
        complexed with ca, trs
    2. Domains for 1zjb:
      1. 1339809Domain d1zjba1: 1zjb A:2-478 [203334]
        Other proteins in same PDB: d1zjba2, d1zjbb2
        automated match to d1m53a2
        complexed with ca, trs
      2. 1339810Domain d1zjbb1: 1zjb B:2-478 [203336]
        Other proteins in same PDB: d1zjba2, d1zjbb2
        automated match to d1m53a2
        complexed with ca, trs
    3. Domains for 2pwd:
      1. 1339807Domain d2pwda1: 2pwd A:1-478 [205664]
        Other proteins in same PDB: d2pwda2, d2pwdb2
        automated match to d1m53a2
        complexed with ca, noj
      2. 1339808Domain d2pwdb1: 2pwd B:1-478 [205666]
        Other proteins in same PDB: d2pwda2, d2pwdb2
        automated match to d1m53a2
        complexed with ca, noj
    4. Domains for 2pwe:
      1. 1339817Domain d2pwea1: 2pwe A:2-478 [205668]
        Other proteins in same PDB: d2pwea2, d2pweb2
        automated match to d1m53a2
        complexed with ca, suc; mutant
      2. 1339818Domain d2pweb1: 2pwe B:2-478 [205670]
        Other proteins in same PDB: d2pwea2, d2pweb2
        automated match to d1m53a2
        complexed with ca, suc; mutant
    5. Domains for 2pwf:
      1. 1339811Domain d2pwfa1: 2pwf A:3-478 [205672]
        Other proteins in same PDB: d2pwfa2, d2pwfb2, d2pwfc2, d2pwfd2
        automated match to d1m53a2
        complexed with bgc, ca; mutant
      2. 1339812Domain d2pwfb1: 2pwf B:4-478 [205674]
        Other proteins in same PDB: d2pwfa2, d2pwfb2, d2pwfc2, d2pwfd2
        automated match to d1m53a2
        complexed with bgc, ca; mutant
      3. 1339813Domain d2pwfc1: 2pwf C:2-478 [205676]
        Other proteins in same PDB: d2pwfa2, d2pwfb2, d2pwfc2, d2pwfd2
        automated match to d1m53a2
        complexed with bgc, ca; mutant
      4. 1339814Domain d2pwfd1: 2pwf D:2-478 [205678]
        Other proteins in same PDB: d2pwfa2, d2pwfb2, d2pwfc2, d2pwfd2
        automated match to d1m53a2
        complexed with bgc, ca; mutant
    6. Domains for 2pwg:
      1. 1339823Domain d2pwga1: 2pwg A:2-478 [205680]
        Other proteins in same PDB: d2pwga2, d2pwgb2
        automated match to d1m53a2
        complexed with ca, cts
      2. 1339824Domain d2pwgb1: 2pwg B:2-478 [205682]
        Other proteins in same PDB: d2pwga2, d2pwgb2
        automated match to d1m53a2
        complexed with ca, cts
    7. Domains for 2pwh:
      1. 1339815Domain d2pwha1: 2pwh A:2-478 [205684]
        Other proteins in same PDB: d2pwha2, d2pwhb2
        automated match to d1m53a2
        complexed with ca
      2. 1339816Domain d2pwhb1: 2pwh B:2-478 [205686]
        Other proteins in same PDB: d2pwha2, d2pwhb2
        automated match to d1m53a2
        complexed with ca
    8. Domains for 4go8:
      1. 1339821Domain d4go8a1: 4go8 A:4-478 [222048]
        Other proteins in same PDB: d4go8a2, d4go8b2
        automated match to d1m53a2
        complexed with ca, trs; mutant
      2. 1339822Domain d4go8b1: 4go8 B:2-478 [222050]
        Other proteins in same PDB: d4go8a2, d4go8b2
        automated match to d1m53a2
        complexed with ca, trs; mutant
    9. Domains for 4go9:
      1. 1339819Domain d4go9a1: 4go9 A:3-478 [222052]
        Other proteins in same PDB: d4go9a2, d4go9b2
        automated match to d1m53a2
        complexed with ca, trs; mutant
      2. 1339820Domain d4go9b1: 4go9 B:4-478 [222054]
        Other proteins in same PDB: d4go9a2, d4go9b2
        automated match to d1m53a2
        complexed with ca, trs; mutant
  11. 1339825Pyrococcus woesei [TaxId:2262] [226292] (1 PDB entry)
  12. 1339827Soybean (Glycine max) [TaxId:3847] [186821] (2 PDB entries)
    1. Domain for 1wdp:
    2. Domain for 2dqx:
  13. 1339830Thermus brockianus [TaxId:56956] [189542] (1 PDB entry)
  14. 1339832Thermus thermophilus [TaxId:274] [188525] (3 PDB entries)
    1. Domain for 2owc:
    2. Domain for 2oww:
    3. Domain for 2owx:

More info for Protein automated matches from c.1.8.1: Amylase, catalytic domain

Timeline for Protein automated matches from c.1.8.1: Amylase, catalytic domain: