Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1361462Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 1361463Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 1361943Family c.36.1.11: Branched-chain alpha-keto acid dehydrogenase PP module [88766] (5 proteins)
    parent family to TK and PFOR
    heterodimeric protein related to TK; alpha-subunit is the PP module and the N-terminal domain of beta-subunit is the Pyr module
  6. 1362002Protein automated matches [190098] (3 species)
    not a true protein

Species:

  1. 1362003Bacillus stearothermophilus [TaxId:1422] [188729] (3 PDB entries)
    1. Domains for 3duf:
      1. 1362012Domain d3dufa_: 3duf A: [174232]
        Other proteins in same PDB: d3dufb1, d3dufb2, d3dufd1, d3dufd2, d3duff1, d3duff2, d3dufh1, d3dufh2
        automated match to d1w85a_
        complexed with k, mg, r1t
      2. 1362013Domain d3dufc_: 3duf C: [174233]
        Other proteins in same PDB: d3dufb1, d3dufb2, d3dufd1, d3dufd2, d3duff1, d3duff2, d3dufh1, d3dufh2
        automated match to d1w85a_
        complexed with k, mg, r1t
      3. 1362014Domain d3dufe_: 3duf E: [174234]
        Other proteins in same PDB: d3dufb1, d3dufb2, d3dufd1, d3dufd2, d3duff1, d3duff2, d3dufh1, d3dufh2
        automated match to d1w85a_
        complexed with k, mg, r1t
      4. 1362015Domain d3dufg_: 3duf G: [174235]
        Other proteins in same PDB: d3dufb1, d3dufb2, d3dufd1, d3dufd2, d3duff1, d3duff2, d3dufh1, d3dufh2
        automated match to d1w85a_
        complexed with k, mg, r1t
    2. Domains for 3dv0:
      1. 1362008Domain d3dv0a_: 3dv0 A: [174255]
        Other proteins in same PDB: d3dv0b1, d3dv0b2, d3dv0d1, d3dv0d2, d3dv0f1, d3dv0f2, d3dv0h1, d3dv0h2
        automated match to d1w85a_
        complexed with k, mg, pyr, tpw
      2. 1362009Domain d3dv0c_: 3dv0 C: [174256]
        Other proteins in same PDB: d3dv0b1, d3dv0b2, d3dv0d1, d3dv0d2, d3dv0f1, d3dv0f2, d3dv0h1, d3dv0h2
        automated match to d1w85a_
        complexed with k, mg, pyr, tpw
      3. 1362010Domain d3dv0e_: 3dv0 E: [174257]
        Other proteins in same PDB: d3dv0b1, d3dv0b2, d3dv0d1, d3dv0d2, d3dv0f1, d3dv0f2, d3dv0h1, d3dv0h2
        automated match to d1w85a_
        complexed with k, mg, pyr, tpw
      4. 1362011Domain d3dv0g_: 3dv0 G: [174258]
        Other proteins in same PDB: d3dv0b1, d3dv0b2, d3dv0d1, d3dv0d2, d3dv0f1, d3dv0f2, d3dv0h1, d3dv0h2
        automated match to d1w85a_
        complexed with k, mg, pyr, tpw
    3. Domains for 3dva:
      1. 1362004Domain d3dvaa_: 3dva A: [174271]
        Other proteins in same PDB: d3dvab1, d3dvab2, d3dvad1, d3dvad2, d3dvaf1, d3dvaf2, d3dvah1, d3dvah2
        automated match to d1w85a_
        complexed with k, mg, tpw
      2. 1362005Domain d3dvac_: 3dva C: [174272]
        Other proteins in same PDB: d3dvab1, d3dvab2, d3dvad1, d3dvad2, d3dvaf1, d3dvaf2, d3dvah1, d3dvah2
        automated match to d1w85a_
        complexed with k, mg, tpw
      3. 1362006Domain d3dvae_: 3dva E: [174273]
        Other proteins in same PDB: d3dvab1, d3dvab2, d3dvad1, d3dvad2, d3dvaf1, d3dvaf2, d3dvah1, d3dvah2
        automated match to d1w85a_
        complexed with k, mg, tpw
      4. 1362007Domain d3dvag_: 3dva G: [174274]
        Other proteins in same PDB: d3dvab1, d3dvab2, d3dvad1, d3dvad2, d3dvaf1, d3dvaf2, d3dvah1, d3dvah2
        automated match to d1w85a_
        complexed with k, mg, tpw
  2. 1362016Human (Homo sapiens) [TaxId:9606] [186820] (5 PDB entries)
    1. Domain for 1wci:
    2. Domain for 2beu:
    3. Domain for 2bev:
    4. Domain for 2bew:
    5. Domains for 2j9f:
      1. 1362020Domain d2j9fa_: 2j9f A: [165952]
        Other proteins in same PDB: d2j9fb1, d2j9fb2, d2j9fd1, d2j9fd2
        automated match to d1olxa_
        complexed with gol, k, mn, thv
      2. 1362021Domain d2j9fc_: 2j9f C: [165953]
        Other proteins in same PDB: d2j9fb1, d2j9fb2, d2j9fd1, d2j9fd2
        automated match to d1olxa_
        complexed with gol, k, mn, thv
  3. 1362023Pseudomonas putida [TaxId:303] [186989] (1 PDB entry)

More info for Protein automated matches from c.36.1.11: Branched-chain alpha-keto acid dehydrogenase PP module

Timeline for Protein automated matches from c.36.1.11: Branched-chain alpha-keto acid dehydrogenase PP module: