Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2109203Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2109204Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families) (S)
    division into families based on beta-sheet topologies
  5. 2109205Family c.37.1.1: Nucleotide and nucleoside kinases [52541] (21 protein domains)
    parallel beta-sheet of 5 strands, order 23145
  6. 2109738Protein automated matches [190087] (10 species)
    not a true protein

Species:

  1. 2109739Bacillus subtilis [TaxId:1423] [189093] (1 PDB entry)
  2. 2109742Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [311340] (1 PDB entry)
  3. 2109745Escherichia coli [TaxId:562] [187701] (2 PDB entries)
    1. Domain for 2fem:
    2. Domain for 2feo:
  4. 2109748Fruit fly (Drosophila melanogaster) [TaxId:7227] [233748] (5 PDB entries)
    1. Domains for 1zm7:
      1. 2109750Domain d1zm7a_: 1zm7 A: [241145]
        automated match to d2vp4d_
        complexed with mg, ttp; mutant
      2. 2109751Domain d1zm7b_: 1zm7 B: [241146]
        automated match to d2vp4d_
        complexed with mg, ttp; mutant
      3. 2109752Domain d1zm7c_: 1zm7 C: [241147]
        automated match to d2vp4d_
        complexed with mg, ttp; mutant
      4. 2109753Domain d1zm7d_: 1zm7 D: [241148]
        automated match to d2vp4d_
        complexed with mg, ttp; mutant
    2. Domains for 1zmx:
      1. 2109764Domain d1zmxa_: 1zmx A: [241149]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      2. 2109765Domain d1zmxb_: 1zmx B: [241150]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      3. 2109766Domain d1zmxc_: 1zmx C: [241151]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      4. 2109767Domain d1zmxd_: 1zmx D: [241152]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      5. 2109768Domain d1zmxe_: 1zmx E: [241153]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      6. 2109769Domain d1zmxf_: 1zmx F: [241154]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      7. 2109770Domain d1zmxg_: 1zmx G: [241155]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      8. 2109771Domain d1zmxh_: 1zmx H: [241156]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
    3. Domains for 2jcs:
      1. 2109754Domain d2jcsa_: 2jcs A: [242214]
        automated match to d2vp4d_
        complexed with mg, ttp; mutant
      2. 2109755Domain d2jcsb_: 2jcs B: [242215]
        automated match to d2vp4d_
        complexed with mg, ttp; mutant
    4. Domains for 2vp6:
      1. 2109756Domain d2vp6a_: 2vp6 A: [153405]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      2. 2109757Domain d2vp6b_: 2vp6 B: [153406]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      3. 2109758Domain d2vp6c_: 2vp6 C: [153407]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      4. 2109759Domain d2vp6d_: 2vp6 D: [153408]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      5. 2109760Domain d2vp6e_: 2vp6 E: [153409]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      6. 2109761Domain d2vp6f_: 2vp6 F: [153410]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      7. 2109762Domain d2vp6g_: 2vp6 G: [153411]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      8. 2109763Domain d2vp6h_: 2vp6 H: [153412]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
    5. Domain for 3tvt:
  5. 2109772Herpes simplex virus type i [311158] (1 PDB entry)
  6. 2109775Human (Homo sapiens) [TaxId:9606] [187523] (7 PDB entries)
    1. Domains for 1z83:
      1. 2109779Domain d1z83a1: 1z83 A:1-194 [162397]
        Other proteins in same PDB: d1z83a2, d1z83b2, d1z83c2
        automated match to d3adka_
        complexed with ap5, so4, zn
      2. 2109780Domain d1z83b1: 1z83 B:1-194 [162398]
        Other proteins in same PDB: d1z83a2, d1z83b2, d1z83c2
        automated match to d3adka_
        complexed with ap5, so4, zn
      3. 2109781Domain d1z83c1: 1z83 C:1-194 [162399]
        Other proteins in same PDB: d1z83a2, d1z83b2, d1z83c2
        automated match to d3adka_
        complexed with ap5, so4, zn
    2. Domains for 2c95:
      1. 2109776Domain d2c95a1: 2c95 A:1-194 [163334]
        Other proteins in same PDB: d2c95a2, d2c95b2
        automated match to d3adka_
        complexed with b4p, mli
      2. 2109777Domain d2c95b1: 2c95 B:2-194 [163335]
        Other proteins in same PDB: d2c95a2, d2c95b2
        automated match to d3adka_
        complexed with b4p, mli
    3. Domain for 2xx3:
    4. Domain for 3iij:
    5. Domain for 3iik:
    6. Domain for 3iil:
    7. Domain for 3iim:
  7. 2109786Methanococcus maripaludis [TaxId:39152] [189067] (1 PDB entry)
  8. 2109791Mycobacterium tuberculosis [TaxId:1773] [186809] (11 PDB entries)
    1. Domains for 1w2g:
      1. 2109793Domain d1w2ga_: 1w2g A: [120580]
        automated match to d1g3ua_
        complexed with act, thm
      2. 2109794Domain d1w2gb_: 1w2g B: [120581]
        automated match to d1g3ua_
        complexed with act, thm
    2. Domains for 1w2h:
      1. 2109796Domain d1w2ha_: 1w2h A: [120582]
        automated match to d1g3ua_
        complexed with act, atm
      2. 2109797Domain d1w2hb_: 1w2h B: [120583]
        automated match to d1g3ua_
        complexed with act, atm
    3. Domain for 1znw:
    4. Domain for 1znx:
    5. Domain for 1zny:
    6. Domain for 1znz:
    7. Domains for 4unn:
      1. 2109807Domain d4unna1: 4unn A:2-209 [273917]
        Other proteins in same PDB: d4unna2, d4unnb2
        automated match to d1w2ga_
        complexed with qzz
      2. 2109808Domain d4unnb1: 4unn B:2-210 [273918]
        Other proteins in same PDB: d4unna2, d4unnb2
        automated match to d1w2ga_
        complexed with qzz
    8. Domain for 4unp:
    9. Domains for 4unq:
      1. 2109804Domain d4unqa_: 4unq A: [274326]
        automated match to d1w2ga_
        complexed with h6d, na
      2. 2109805Domain d4unqb_: 4unq B: [274327]
        automated match to d1w2ga_
        complexed with h6d, na
    10. Domains for 4unr:
      1. 2109800Domain d4unra_: 4unr A: [273922]
        automated match to d1w2ga_
        complexed with mg, qze
      2. 2109801Domain d4unrb_: 4unr B: [273921]
        automated match to d1w2ga_
        complexed with mg, qze
    11. Domains for 4uns:
      1. 2109802Domain d4unsa_: 4uns A: [273925]
        automated match to d1w2ga_
        complexed with na, qz3
      2. 2109803Domain d4unsb_: 4uns B: [273926]
        automated match to d1w2ga_
        complexed with na, qz3
  9. 2109809Vibrio cholerae [TaxId:243277] [225848] (2 PDB entries)
    1. Domain for 3lv8:
    2. Domains for 3n2i:
      1. 2109811Domain d3n2ia_: 3n2i A: [213676]
        automated match to d4tmka_
        complexed with cl, thm
      2. 2109812Domain d3n2ib_: 3n2i B: [213677]
        automated match to d4tmka_
        complexed with cl, thm
  10. 2109813Yersinia pseudotuberculosis [TaxId:502800] [226541] (1 PDB entry)

More info for Protein automated matches from c.37.1.1: Nucleotide and nucleoside kinases

Timeline for Protein automated matches from c.37.1.1: Nucleotide and nucleoside kinases: