Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families) (S)
    division into families based on beta-sheet topologies
  5. Family c.37.1.1: Nucleotide and nucleoside kinases [52541] (21 proteins)
    parallel beta-sheet of 5 strands, order 23145
  6. Protein automated matches [190087] (15 species)
    not a true protein

Species:

  1. Bacillus subtilis [TaxId:1423] [189093] (1 PDB entry)
  2. Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [311340] (1 PDB entry)
  3. Escherichia coli [TaxId:562] [187701] (2 PDB entries)
    1. Domain for 2fem:
    2. Domain for 2feo:
  4. Escherichia coli [TaxId:83333] [356329] (1 PDB entry)
  5. Fruit fly (Drosophila melanogaster) [TaxId:7227] [233748] (6 PDB entries)
    1. Domains for 1zm7:
      1. Domain d1zm7a_: 1zm7 A: [241145]
        automated match to d2vp4d_
        complexed with mg, ttp; mutant
      2. Domain d1zm7b_: 1zm7 B: [241146]
        automated match to d2vp4d_
        complexed with mg, ttp; mutant
      3. Domain d1zm7c_: 1zm7 C: [241147]
        automated match to d2vp4d_
        complexed with mg, ttp; mutant
      4. Domain d1zm7d_: 1zm7 D: [241148]
        automated match to d2vp4d_
        complexed with mg, ttp; mutant
    2. Domains for 1zmx:
      1. Domain d1zmxa_: 1zmx A: [241149]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      2. Domain d1zmxb_: 1zmx B: [241150]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      3. Domain d1zmxc_: 1zmx C: [241151]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      4. Domain d1zmxd_: 1zmx D: [241152]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      5. Domain d1zmxe_: 1zmx E: [241153]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      6. Domain d1zmxf_: 1zmx F: [241154]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      7. Domain d1zmxg_: 1zmx G: [241155]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
      8. Domain d1zmxh_: 1zmx H: [241156]
        automated match to d2vp4d_
        complexed with so4, thm; mutant
    3. Domains for 2jcs:
      1. Domain d2jcsa_: 2jcs A: [242214]
        automated match to d2vp4d_
        complexed with mg, ttp; mutant
      2. Domain d2jcsb_: 2jcs B: [242215]
        automated match to d2vp4d_
        complexed with mg, ttp; mutant
    4. Domains for 2vp6:
      1. Domain d2vp6a_: 2vp6 A: [153405]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      2. Domain d2vp6b_: 2vp6 B: [153406]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      3. Domain d2vp6c_: 2vp6 C: [153407]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      4. Domain d2vp6d_: 2vp6 D: [153408]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      5. Domain d2vp6e_: 2vp6 E: [153409]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      6. Domain d2vp6f_: 2vp6 F: [153410]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      7. Domain d2vp6g_: 2vp6 G: [153411]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
      8. Domain d2vp6h_: 2vp6 H: [153412]
        automated match to d2vp4d_
        protein/DNA complex; complexed with 5fu, so4
    5. Domain for 3tvt:
    6. Domains for 6ybh:
      1. Domain d6ybhb_: 6ybh B: [402805]
        automated match to d1j90a_
        complexed with 4pc, gol, so4
      2. Domain d6ybhe_: 6ybh E: [402822]
        automated match to d2vp4d_
        complexed with 4pc, gol, so4
      3. Domain d6ybhc_: 6ybh C: [412224]
        automated match to d6ybhb_
        complexed with 4pc, gol, so4
      4. Domain d6ybha_: 6ybh A: [412223]
        automated match to d6ybhb_
        complexed with 4pc, gol, so4
      5. Domain d6ybhd_: 6ybh D: [412225]
        automated match to d6ybhb_
        complexed with 4pc, gol, so4
      6. Domain d6ybhf_: 6ybh F: [412226]
        automated match to d6ybhb_
        complexed with 4pc, gol, so4
  6. Herpes simplex virus type i [311158] (1 PDB entry)
  7. Human (Homo sapiens) [TaxId:9606] [187523] (7 PDB entries)
    1. Domains for 1z83:
      1. Domain d1z83a1: 1z83 A:1-194 [162397]
        Other proteins in same PDB: d1z83a2, d1z83b2, d1z83c2
        automated match to d3adka_
        complexed with ap5, so4, zn
      2. Domain d1z83b1: 1z83 B:1-194 [162398]
        Other proteins in same PDB: d1z83a2, d1z83b2, d1z83c2
        automated match to d3adka_
        complexed with ap5, so4, zn
      3. Domain d1z83c1: 1z83 C:1-194 [162399]
        Other proteins in same PDB: d1z83a2, d1z83b2, d1z83c2
        automated match to d3adka_
        complexed with ap5, so4, zn
    2. Domains for 2c95:
      1. Domain d2c95a1: 2c95 A:1-194 [163334]
        Other proteins in same PDB: d2c95a2, d2c95b2
        automated match to d3adka_
        complexed with b4p, mli
      2. Domain d2c95b1: 2c95 B:2-194 [163335]
        Other proteins in same PDB: d2c95a2, d2c95b2
        automated match to d3adka_
        complexed with b4p, mli
    3. Domain for 2xx3:
    4. Domain for 3iij:
    5. Domain for 3iik:
    6. Domain for 3iil:
    7. Domain for 3iim:
  8. Methanococcus maripaludis [TaxId:39152] [189067] (1 PDB entry)
  9. Methanotorris igneus [TaxId:2189] [379246] (3 PDB entries)
    1. Domains for 6pjw:
      1. Domain d6pjwa_: 6pjw A: [379413]
        automated match to d1ki9b_
        complexed with amp, mg
      2. Domain d6pjwb_: 6pjw B: [379326]
        automated match to d1ki9b_
        complexed with amp, mg
      3. Domain d6pjwc_: 6pjw C: [379247]
        automated match to d1ki9b_
        complexed with amp, mg
      4. Domain d6pjwd_: 6pjw D: [379291]
        automated match to d1ki9b_
        complexed with amp, mg
      5. Domain d6pjwe_: 6pjw E: [379297]
        automated match to d1ki9b_
        complexed with amp, mg
      6. Domain d6pjwf_: 6pjw F: [379262]
        automated match to d1ki9b_
        complexed with amp, mg
      7. Domain d6pjwg_: 6pjw G: [379250]
        automated match to d1ki9b_
        complexed with amp, mg
      8. Domain d6pjwh_: 6pjw H: [379362]
        automated match to d1ki9b_
        complexed with amp, mg
      9. Domain d6pjwi_: 6pjw I: [379359]
        automated match to d1ki9b_
        complexed with amp, mg
      10. Domain d6pjwj_: 6pjw J: [379286]
        automated match to d1ki9b_
        complexed with amp, mg
      11. Domain d6pjwk_: 6pjw K: [379251]
        automated match to d1ki9b_
        complexed with amp, mg
      12. Domain d6pjwl_: 6pjw L: [379322]
        automated match to d1ki9b_
        complexed with amp, mg
    2. Domains for 6pk5:
      1. Domain d6pk5a_: 6pk5 A: [388619]
        automated match to d1ki9b_
        complexed with cl
      2. Domain d6pk5b_: 6pk5 B: [388559]
        automated match to d1ki9b_
        complexed with cl
      3. Domain d6pk5c_: 6pk5 C: [388565]
        automated match to d1ki9b_
        complexed with cl
      4. Domain d6pk5d_: 6pk5 D: [388568]
        automated match to d1ki9b_
        complexed with cl
      5. Domain d6pk5e_: 6pk5 E: [388582]
        automated match to d1ki9b_
        complexed with cl
      6. Domain d6pk5f_: 6pk5 F: [388674]
        automated match to d1ki9b_
        complexed with cl
    3. Domains for 6psp:
      1. Domain d6pspa_: 6psp A: [388567]
        automated match to d1ki9b_
        complexed with ap5
      2. Domain d6pspb_: 6psp B: [388579]
        automated match to d1ki9b_
        complexed with ap5
      3. Domain d6pspc_: 6psp C: [388700]
        automated match to d1ki9b_
        complexed with ap5
      4. Domain d6pspd_: 6psp D: [388606]
        automated match to d1ki9b_
        complexed with ap5
      5. Domain d6pspe_: 6psp E: [388636]
        automated match to d1ki9b_
        complexed with ap5
      6. Domain d6pspf_: 6psp F: [388602]
        automated match to d1ki9b_
        complexed with ap5
  10. Mycobacterium tuberculosis [TaxId:1773] [186809] (11 PDB entries)
    1. Domains for 1w2g:
      1. Domain d1w2ga_: 1w2g A: [120580]
        automated match to d1g3ua_
        complexed with act, thm
      2. Domain d1w2gb_: 1w2g B: [120581]
        automated match to d1g3ua_
        complexed with act, thm
    2. Domains for 1w2h:
      1. Domain d1w2ha_: 1w2h A: [120582]
        automated match to d1g3ua_
        complexed with act, atm
      2. Domain d1w2hb_: 1w2h B: [120583]
        automated match to d1g3ua_
        complexed with act, atm
    3. Domain for 1znw:
    4. Domain for 1znx:
    5. Domain for 1zny:
    6. Domain for 1znz:
    7. Domains for 4unn:
      1. Domain d4unna1: 4unn A:2-209 [273917]
        Other proteins in same PDB: d4unna2, d4unnb2
        automated match to d1w2ga_
        complexed with qzz
      2. Domain d4unnb1: 4unn B:2-210 [273918]
        Other proteins in same PDB: d4unna2, d4unnb2
        automated match to d1w2ga_
        complexed with qzz
    8. Domain for 4unp:
    9. Domains for 4unq:
      1. Domain d4unqa_: 4unq A: [274326]
        automated match to d1w2ga_
        complexed with h6d, na
      2. Domain d4unqb_: 4unq B: [274327]
        automated match to d1w2ga_
        complexed with h6d, na
    10. Domains for 4unr:
      1. Domain d4unra_: 4unr A: [273922]
        automated match to d1w2ga_
        complexed with mg, qze
      2. Domain d4unrb_: 4unr B: [273921]
        automated match to d1w2ga_
        complexed with mg, qze
    11. Domains for 4uns:
      1. Domain d4unsa_: 4uns A: [273925]
        automated match to d1w2ga_
        complexed with na, qz3
      2. Domain d4unsb_: 4uns B: [273926]
        automated match to d1w2ga_
        complexed with na, qz3
  11. Black rockcod (Notothenia coriiceps) [TaxId:8208] [353563] (3 PDB entries)
    1. Domains for 5xru:
      1. Domain d5xrua_: 5xru A: [353564]
        automated match to d3adka_
        complexed with ap5, so4
      2. Domain d5xrub_: 5xru B: [353581]
        automated match to d3adka_
        complexed with ap5, so4
    2. Domains for 5ycb:
      1. Domain d5ycba_: 5ycb A: [357600]
        automated match to d3adka_
        complexed with ap5, so4
      2. Domain d5ycbb_: 5ycb B: [357572]
        automated match to d3adka_
        complexed with ap5, so4
    3. Domains for 5ycc:
      1. Domain d5ycca_: 5ycc A: [357612]
        automated match to d3adka_
        complexed with ap5, so4
      2. Domain d5yccb_: 5ycc B: [357575]
        automated match to d3adka_
        complexed with ap5, so4
  12. Poecilia reticulata [TaxId:8081] [357578] (1 PDB entry)
  13. Vibrio cholerae [TaxId:243277] [225848] (2 PDB entries)
    1. Domain for 3lv8:
    2. Domains for 3n2i:
      1. Domain d3n2ia_: 3n2i A: [213676]
        automated match to d4tmka_
        complexed with cl, thm
      2. Domain d3n2ib_: 3n2i B: [213677]
        automated match to d4tmka_
        complexed with cl, thm
  14. Xiphophorus maculatus [TaxId:8083] [357570] (1 PDB entry)
  15. Yersinia pseudotuberculosis [TaxId:502800] [226541] (1 PDB entry)

More info for Protein automated matches from c.37.1.1: Nucleotide and nucleoside kinases

Timeline for Protein automated matches from c.37.1.1: Nucleotide and nucleoside kinases: