Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2085156Superfamily c.1.10: Aldolase [51569] (9 families) (S)
    Common fold covers whole protein structure
  5. 2086072Family c.1.10.4: Class I DAHP synthetase [51599] (3 protein domains)
  6. 2086269Protein automated matches [190083] (8 species)
    not a true protein

Species:

  1. 2086270Aquifex aeolicus [TaxId:63363] [187662] (1 PDB entry)
  2. 2086273Burkholderia pseudomallei [TaxId:320372] [189833] (3 PDB entries)
    1. Domains for 3sz8:
      1. 2086278Domain d3sz8a1: 3sz8 A:1-278 [216611]
        Other proteins in same PDB: d3sz8a2, d3sz8b2, d3sz8d2
        automated match to d3unda_
        complexed with act
      2. 2086279Domain d3sz8b1: 3sz8 B:1-279 [216612]
        Other proteins in same PDB: d3sz8a2, d3sz8b2, d3sz8d2
        automated match to d3unda_
        complexed with act
      3. 2086280Domain d3sz8c_: 3sz8 C: [216613]
        Other proteins in same PDB: d3sz8a2, d3sz8b2, d3sz8d2
        automated match to d3unda_
        complexed with act
      4. 2086281Domain d3sz8d1: 3sz8 D:1-279 [216614]
        Other proteins in same PDB: d3sz8a2, d3sz8b2, d3sz8d2
        automated match to d3unda_
        complexed with act
    2. Domains for 3tmq:
      1. 2086282Domain d3tmqa_: 3tmq A: [200846]
        Other proteins in same PDB: d3tmqb2, d3tmqc2
        automated match to d3unda_
        complexed with a5p, edo, no3
      2. 2086283Domain d3tmqb1: 3tmq B:1-281 [200847]
        Other proteins in same PDB: d3tmqb2, d3tmqc2
        automated match to d3unda_
        complexed with a5p, edo, no3
      3. 2086284Domain d3tmqc1: 3tmq C:1-280 [200848]
        Other proteins in same PDB: d3tmqb2, d3tmqc2
        automated match to d3unda_
        complexed with a5p, edo, no3
      4. 2086285Domain d3tmqd_: 3tmq D: [193635]
        Other proteins in same PDB: d3tmqb2, d3tmqc2
        automated match to d3undb_
        complexed with a5p, edo, no3
    3. Domains for 3und:
      1. 2086274Domain d3unda1: 3und A:1-281 [186347]
        Other proteins in same PDB: d3unda2, d3undb2, d3undc2, d3undd2
        automated match to d1o60a_
        complexed with a5p, edo, kd0, pep
      2. 2086275Domain d3undb1: 3und B:1-281 [186348]
        Other proteins in same PDB: d3unda2, d3undb2, d3undc2, d3undd2
        automated match to d1o60a_
        complexed with a5p, edo, kd0, pep
      3. 2086276Domain d3undc1: 3und C:1-281 [186349]
        Other proteins in same PDB: d3unda2, d3undb2, d3undc2, d3undd2
        automated match to d1o60a_
        complexed with a5p, edo, kd0, pep
      4. 2086277Domain d3undd1: 3und D:1-281 [186350]
        Other proteins in same PDB: d3unda2, d3undb2, d3undc2, d3undd2
        automated match to d1o60a_
        complexed with a5p, edo, kd0, pep
  3. 2086286Neisseria meningitidis [TaxId:122586] [189819] (16 PDB entries)
    1. Domains for 3qpy:
      1. 2086335Domain d3qpya_: 3qpy A: [184557]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
      2. 2086336Domain d3qpyb_: 3qpy B: [184558]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
      3. 2086337Domain d3qpyc_: 3qpy C: [184559]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
      4. 2086338Domain d3qpyd_: 3qpy D: [184560]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
    2. Domains for 3qpz:
      1. 2086291Domain d3qpza_: 3qpz A: [184561]
        automated match to d1d9ea_
        complexed with cl, gol, na, po4; mutant
      2. 2086292Domain d3qpzb_: 3qpz B: [184562]
        automated match to d1d9ea_
        complexed with cl, gol, na, po4; mutant
      3. 2086293Domain d3qpzc_: 3qpz C: [184563]
        automated match to d1d9ea_
        complexed with cl, gol, na, po4; mutant
      4. 2086294Domain d3qpzd_: 3qpz D: [184564]
        automated match to d1d9ea_
        complexed with cl, gol, na, po4; mutant
    3. Domains for 3qq0:
      1. 2086327Domain d3qq0a_: 3qq0 A: [184565]
        automated match to d1g7ua_
        complexed with cl, gol, na; mutant
      2. 2086328Domain d3qq0b_: 3qq0 B: [184566]
        automated match to d1g7ua_
        complexed with cl, gol, na; mutant
      3. 2086329Domain d3qq0c_: 3qq0 C: [184567]
        automated match to d1g7ua_
        complexed with cl, gol, na; mutant
      4. 2086330Domain d3qq0d_: 3qq0 D: [184568]
        automated match to d1g7ua_
        complexed with cl, gol, na; mutant
    4. Domains for 3qq1:
      1. 2086347Domain d3qq1a_: 3qq1 A: [184569]
        automated match to d1d9ea_
        mutant
      2. 2086348Domain d3qq1b_: 3qq1 B: [184570]
        automated match to d1d9ea_
        mutant
      3. 2086349Domain d3qq1c_: 3qq1 C: [184571]
        automated match to d1d9ea_
        mutant
      4. 2086350Domain d3qq1d_: 3qq1 D: [184572]
        automated match to d1d9ea_
        mutant
    5. Domains for 3stc:
      1. 2086303Domain d3stca_: 3stc A: [185545]
        automated match to d1d9ea_
        complexed with cl, na; mutant
      2. 2086304Domain d3stcb_: 3stc B: [185546]
        automated match to d1d9ea_
        complexed with cl, na; mutant
      3. 2086305Domain d3stcc_: 3stc C: [185547]
        automated match to d1d9ea_
        complexed with cl, na; mutant
      4. 2086306Domain d3stcd_: 3stc D: [185548]
        automated match to d1d9ea_
        complexed with cl, na; mutant
    6. Domains for 3ste:
      1. 2086319Domain d3stea_: 3ste A: [185549]
        automated match to d1d9ea_
        complexed with cl, na; mutant
      2. 2086320Domain d3steb_: 3ste B: [185550]
        automated match to d1d9ea_
        complexed with cl, na; mutant
      3. 2086321Domain d3stec_: 3ste C: [185551]
        automated match to d1d9ea_
        complexed with cl, na; mutant
      4. 2086322Domain d3sted_: 3ste D: [185552]
        automated match to d1d9ea_
        complexed with cl, na; mutant
    7. Domains for 3stf:
      1. 2086295Domain d3stfa_: 3stf A: [185553]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
      2. 2086296Domain d3stfb_: 3stf B: [185554]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
      3. 2086297Domain d3stfc_: 3stf C: [185555]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
      4. 2086298Domain d3stfd_: 3stf D: [185556]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
    8. Domains for 3stg:
      1. 2086331Domain d3stga_: 3stg A: [185557]
        automated match to d1d9ea_
        complexed with cl; mutant
      2. 2086332Domain d3stgb_: 3stg B: [185558]
        automated match to d1d9ea_
        complexed with cl; mutant
      3. 2086333Domain d3stgc_: 3stg C: [185559]
        automated match to d1d9ea_
        complexed with cl; mutant
      4. 2086334Domain d3stgd_: 3stg D: [185560]
        automated match to d1d9ea_
        complexed with cl; mutant
    9. Domains for 4jte:
      1. 2086339Domain d4jtea_: 4jte A: [223992]
        automated match to d3undc_
        complexed with cl, na; mutant
      2. 2086340Domain d4jteb_: 4jte B: [223993]
        automated match to d3undc_
        complexed with cl, na; mutant
      3. 2086341Domain d4jtec_: 4jte C: [223994]
        automated match to d3undc_
        complexed with cl, na; mutant
      4. 2086342Domain d4jted_: 4jte D: [223995]
        automated match to d3undc_
        complexed with cl, na; mutant
    10. Domains for 4jtf:
      1. 2086311Domain d4jtfa_: 4jtf A: [223996]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      2. 2086312Domain d4jtfb_: 4jtf B: [223997]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      3. 2086313Domain d4jtfc_: 4jtf C: [223998]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      4. 2086314Domain d4jtfd_: 4jtf D: [223999]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
    11. Domains for 4jtg:
      1. 2086299Domain d4jtga_: 4jtg A: [224000]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      2. 2086300Domain d4jtgb_: 4jtg B: [224001]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      3. 2086301Domain d4jtgc_: 4jtg C: [224002]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      4. 2086302Domain d4jtgd_: 4jtg D: [224003]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
    12. Domains for 4jth:
      1. 2086323Domain d4jtha_: 4jth A: [224004]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      2. 2086324Domain d4jthb_: 4jth B: [224005]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      3. 2086325Domain d4jthc_: 4jth C: [224006]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      4. 2086326Domain d4jthd_: 4jth D: [224007]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
    13. Domains for 4jti:
      1. 2086287Domain d4jtia_: 4jti A: [224008]
        automated match to d3unda_
        complexed with cl; mutant
      2. 2086288Domain d4jtib_: 4jti B: [224009]
        automated match to d3unda_
        complexed with cl; mutant
      3. 2086289Domain d4jtic_: 4jti C: [224010]
        automated match to d3unda_
        complexed with cl; mutant
      4. 2086290Domain d4jtid_: 4jti D: [224011]
        automated match to d3unda_
        complexed with cl; mutant
    14. Domains for 4jtj:
      1. 2086307Domain d4jtja_: 4jtj A: [224012]
        automated match to d3undc_
        complexed with cl, na; mutant
      2. 2086308Domain d4jtjb_: 4jtj B: [224013]
        automated match to d3undc_
        complexed with cl, na; mutant
      3. 2086309Domain d4jtjc_: 4jtj C: [224014]
        automated match to d3undc_
        complexed with cl, na; mutant
      4. 2086310Domain d4jtjd_: 4jtj D: [224015]
        automated match to d3undc_
        complexed with cl, na; mutant
    15. Domains for 4jtk:
      1. 2086315Domain d4jtka_: 4jtk A: [224016]
        automated match to d3undc_
        complexed with cl, na; mutant
      2. 2086316Domain d4jtkb_: 4jtk B: [224017]
        automated match to d3undc_
        complexed with cl, na; mutant
      3. 2086317Domain d4jtkc_: 4jtk C: [224018]
        automated match to d3undc_
        complexed with cl, na; mutant
      4. 2086318Domain d4jtkd_: 4jtk D: [224019]
        automated match to d3undc_
        complexed with cl, na; mutant
    16. Domains for 4jtl:
      1. 2086343Domain d4jtla_: 4jtl A: [224020]
        automated match to d3tmqd_
        complexed with cl; mutant
      2. 2086344Domain d4jtlb_: 4jtl B: [224021]
        automated match to d3tmqd_
        complexed with cl; mutant
      3. 2086345Domain d4jtlc_: 4jtl C: [224022]
        automated match to d3tmqd_
        complexed with cl; mutant
      4. 2086346Domain d4jtld_: 4jtl D: [224023]
        automated match to d3tmqd_
        complexed with cl; mutant
  4. 2086351Neisseria meningitidis [TaxId:491] [188836] (2 PDB entries)
    1. Domains for 3fyo:
      1. 2086356Domain d3fyoa_: 3fyo A: [176143]
        automated match to d1d9ea_
        complexed with cl, mn, na, pep; mutant
      2. 2086357Domain d3fyob_: 3fyo B: [176144]
        automated match to d1d9ea_
        complexed with cl, mn, na, pep; mutant
      3. 2086358Domain d3fyoc_: 3fyo C: [176145]
        automated match to d1d9ea_
        complexed with cl, mn, na, pep; mutant
      4. 2086359Domain d3fyod_: 3fyo D: [176146]
        automated match to d1d9ea_
        complexed with cl, mn, na, pep; mutant
    2. Domains for 3fyp:
      1. 2086352Domain d3fypa_: 3fyp A: [176147]
        automated match to d1d9ea_
        complexed with cl, gol, mn, na, pep; mutant
      2. 2086353Domain d3fypb_: 3fyp B: [176148]
        automated match to d1d9ea_
        complexed with cl, gol, mn, na, pep; mutant
      3. 2086354Domain d3fypc_: 3fyp C: [176149]
        automated match to d1d9ea_
        complexed with cl, gol, mn, na, pep; mutant
      4. 2086355Domain d3fypd_: 3fyp D: [176150]
        automated match to d1d9ea_
        complexed with cl, gol, mn, na, pep; mutant
  5. 2086360Pseudomonas aeruginosa [TaxId:20894] [228239] (1 PDB entry)
  6. 2086365Thermotoga maritima [TaxId:2336] [186804] (3 PDB entries)
    1. Domains for 1vr6:
      1. 2086366Domain d1vr6a2: 1vr6 A:1-338 [120439]
        Other proteins in same PDB: d1vr6a3, d1vr6b3, d1vr6c3, d1vr6d3
        automated match to d1rzma_
      2. 2086367Domain d1vr6b2: 1vr6 B:1-338 [120440]
        Other proteins in same PDB: d1vr6a3, d1vr6b3, d1vr6c3, d1vr6d3
        automated match to d1rzma_
      3. 2086368Domain d1vr6c2: 1vr6 C:1-338 [120441]
        Other proteins in same PDB: d1vr6a3, d1vr6b3, d1vr6c3, d1vr6d3
        automated match to d1rzma_
      4. 2086369Domain d1vr6d2: 1vr6 D:1-338 [120442]
        Other proteins in same PDB: d1vr6a3, d1vr6b3, d1vr6c3, d1vr6d3
        automated match to d1rzma_
    2. Domains for 3pg8:
      1. 2086370Domain d3pg8a1: 3pg8 A:71-338 [214765]
        Other proteins in same PDB: d3pg8a2, d3pg8b2
        automated match to d1o60a_
        complexed with azi, gol
      2. 2086371Domain d3pg8b1: 3pg8 B:71-338 [214766]
        Other proteins in same PDB: d3pg8a2, d3pg8b2
        automated match to d1o60a_
        complexed with azi, gol
    3. Domains for 3pg9:
      1. 2086372Domain d3pg9a_: 3pg9 A: [183705]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      2. 2086373Domain d3pg9b_: 3pg9 B: [183706]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      3. 2086374Domain d3pg9c_: 3pg9 C: [183707]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      4. 2086375Domain d3pg9d_: 3pg9 D: [183708]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      5. 2086376Domain d3pg9e_: 3pg9 E: [183709]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      6. 2086377Domain d3pg9f_: 3pg9 F: [183710]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      7. 2086378Domain d3pg9g_: 3pg9 G: [183711]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      8. 2086379Domain d3pg9h_: 3pg9 H: [183712]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
  7. 2086380Vibrio cholerae [TaxId:686] [188599] (1 PDB entry)
  8. 2277640Escherichia coli [TaxId:83333] [320941] (1 PDB entry)

More info for Protein automated matches from c.1.10.4: Class I DAHP synthetase

Timeline for Protein automated matches from c.1.10.4: Class I DAHP synthetase: