Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2453146Fold c.41: Subtilisin-like [52742] (1 superfamily)
    3 layers: a/b/a, parallel beta-sheet of 7 strands, order 2314567; left-handed crossover connection between strands 2 & 3
  4. 2453147Superfamily c.41.1: Subtilisin-like [52743] (3 families) (S)
  5. 2453148Family c.41.1.1: Subtilases [52744] (14 protein domains)
  6. 2453349Protein automated matches [190073] (15 species)
    not a true protein

Species:

  1. 2453350Bacillus amyloliquefaciens [TaxId:1390] [186793] (2 PDB entries)
    1. Domain for 1v5i:
    2. Domain for 3f49:
  2. 2453353Bacillus clausii [267808] (1 PDB entry)
  3. 2453360Bacillus clausii [TaxId:79880] [267807] (2 PDB entries)
    1. Domains for 2wv7:
      1. 2453367Domain d2wv7a_: 2wv7 A: [264537]
        automated match to d2xrma_
        complexed with na
      2. 2453368Domain d2wv7b_: 2wv7 B: [264538]
        automated match to d2xrma_
        complexed with na
      3. 2453369Domain d2wv7c_: 2wv7 C: [264539]
        automated match to d2xrma_
        complexed with na
      4. 2453370Domain d2wv7d_: 2wv7 D: [264540]
        automated match to d2xrma_
        complexed with na
      5. 2453371Domain d2wv7e_: 2wv7 E: [264541]
        automated match to d2xrma_
        complexed with na
      6. 2453372Domain d2wv7f_: 2wv7 F: [264542]
        automated match to d2xrma_
        complexed with na
    2. Domains for 2x8j:
      1. 2453361Domain d2x8ja_: 2x8j A: [264556]
        automated match to d2xrma_
        complexed with 1pe, gol, na
      2. 2453362Domain d2x8jb_: 2x8j B: [264557]
        automated match to d2xrma_
        complexed with 1pe, gol, na
      3. 2453363Domain d2x8jc_: 2x8j C: [264558]
        automated match to d2xrma_
        complexed with 1pe, gol, na
      4. 2453364Domain d2x8jd_: 2x8j D: [264559]
        automated match to d2xrma_
        complexed with 1pe, gol, na
      5. 2453365Domain d2x8je_: 2x8j E: [264560]
        automated match to d2xrma_
        complexed with 1pe, gol, na
      6. 2453366Domain d2x8jf_: 2x8j F: [264561]
        automated match to d2xrma_
        complexed with 1pe, gol, na
  4. 2453373Bacillus halmapalus [TaxId:79882] [317439] (2 PDB entries)
    1. Domains for 5fax:
      1. 2453376Domain d5faxa1: 5fax A:1-317 [317478]
        Other proteins in same PDB: d5faxa2, d5faxb2
        automated match to d1wmda2
        complexed with ca
      2. 2453377Domain d5faxb1: 5fax B:1-317 [317462]
        Other proteins in same PDB: d5faxa2, d5faxb2
        automated match to d1wmda2
        complexed with ca
    2. Domains for 5fbz:
      1. 2453374Domain d5fbza1: 5fbz A:1-317 [317440]
        Other proteins in same PDB: d5fbza2, d5fbzb_, d5fbzc2, d5fbzd1
        automated match to d1wmda2
        complexed with ca
      2. 2453375Domain d5fbzc1: 5fbz C:1-317 [317445]
        Other proteins in same PDB: d5fbza2, d5fbzb_, d5fbzc2, d5fbzd1
        automated match to d1wmda2
        complexed with ca
  5. 2453378Bacillus lentus [TaxId:1467] [187257] (4 PDB entries)
    1. Domains for 3bx1:
      1. 2453382Domain d3bx1a_: 3bx1 A: [155702]
        Other proteins in same PDB: d3bx1c_, d3bx1d_
        automated match to d1c9ma_
        complexed with ca, cl, na
      2. 2453383Domain d3bx1b_: 3bx1 B: [155703]
        Other proteins in same PDB: d3bx1c_, d3bx1d_
        automated match to d1c9ma_
        complexed with ca, cl, na
    2. Domain for 5arb:
    3. Domain for 5arc:
    4. Domain for 5ard:
  6. 2453384Bacillus licheniformis [TaxId:1402] [186887] (7 PDB entries)
    1. Domain for 1a10:
    2. Domains for 1yu6:
      1. 2453385Domain d1yu6a_: 1yu6 A: [124040]
        Other proteins in same PDB: d1yu6c_, d1yu6d_
        automated match to d1af4__
        complexed with ca
      2. 2453386Domain d1yu6b_: 1yu6 B: [124041]
        Other proteins in same PDB: d1yu6c_, d1yu6d_
        automated match to d1af4__
        complexed with ca
    3. Domain for 2wuv:
    4. Domain for 2wuw:
    5. Domains for 3qtl:
      1. 2453393Domain d3qtla_: 3qtl A: [184621]
        automated match to d1af4a_
      2. 2453394Domain d3qtlb_: 3qtl B: [184622]
        automated match to d1af4a_
      3. 2453395Domain d3qtlc_: 3qtl C: [184623]
        automated match to d1af4a_
    6. Domain for 4gi3:
    7. Domains for 4hx2:
      1. 2453391Domain d4hx2a_: 4hx2 A: [192569]
        Other proteins in same PDB: d4hx2b1, d4hx2b2, d4hx2d_
        automated match to d3qtla_
        complexed with 1ax, act, ca, cac, cl, gol, ipa, k, po4, zn
      2. 2453392Domain d4hx2c_: 4hx2 C: [192838]
        Other proteins in same PDB: d4hx2b1, d4hx2b2, d4hx2d_
        automated match to d3qtla_
        complexed with 1ax, act, ca, cac, cl, gol, ipa, k, po4, zn
  7. 2453396Bacillus sp. [TaxId:1409] [317459] (1 PDB entry)
  8. 2453398Bacillus sphaericus [TaxId:1421] [188865] (2 PDB entries)
    1. Domains for 2ixt:
      1. 2453399Domain d2ixta_: 2ixt A: [147828]
        automated match to d1ea7a_
        complexed with ca
      2. 2453400Domain d2ixtb_: 2ixt B: [147829]
        automated match to d1ea7a_
        complexed with ca
    2. Domains for 3d43:
      1. 2453401Domain d3d43a_: 3d43 A: [173669]
        automated match to d1ea7a_
        complexed with ca
      2. 2453402Domain d3d43b_: 3d43 B: [173670]
        automated match to d1ea7a_
        complexed with ca
  9. 2453403Bacillus subtilis [TaxId:1423] [187756] (1 PDB entry)
  10. 2453405Bacillus subtilis [TaxId:86029] [195839] (3 PDB entries)
    1. Domains for 3vyv:
      1. 2453406Domain d3vyva_: 3vyv A: [228278]
        automated match to d4dwwa_
        complexed with ca, gol
      2. 2453407Domain d3vyvb_: 3vyv B: [228279]
        automated match to d4dwwa_
        complexed with ca, gol
    2. Domain for 4dww:
    3. Domains for 5gl8:
      1. 2453409Domain d5gl8a_: 5gl8 A: [340436]
        automated match to d3vyva_
        complexed with ca
      2. 2453410Domain d5gl8b_: 5gl8 B: [340440]
        automated match to d3vyva_
        complexed with ca
  11. 2453411Engyodontium album [TaxId:37998] [187057] (27 PDB entries)
    1. Domain for 2dp4:
    2. Domain for 2dqk:
    3. Domain for 2duj:
    4. Domain for 2g4v:
    5. Domain for 2hd4:
    6. Domain for 2hpz:
    7. Domain for 2id8:
    8. Domain for 2pq2:
    9. Domain for 2pwa:
    10. Domain for 2pwb:
    11. Domain for 2pyz:
    12. Domain for 3d9q:
    13. Domain for 3ddz:
    14. Domain for 3de0:
    15. Domain for 3de1:
    16. Domain for 3de2:
    17. Domain for 3de3:
    18. Domain for 3de4:
    19. Domain for 3de5:
    20. Domain for 3de6:
    21. Domain for 3de7:
    22. Domain for 3dyb:
    23. Domain for 3gt3:
    24. Domain for 3gt4:
    25. Domain for 3osz:
    26. Domain for 3ptl:
    27. Domain for 3q5g:
  12. 2453439Human (Homo sapiens) [TaxId:9606] [238473] (7 PDB entries)
    1. Domains for 4omc:
      1. 2453444Domain d4omca1: 4omc A:109-442 [238478]
        Other proteins in same PDB: d4omca2, d4omcb2, d4omcc2, d4omcd2, d4omce2, d4omcf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      2. 2453445Domain d4omcb1: 4omc B:110-442 [263315]
        Other proteins in same PDB: d4omca2, d4omcb2, d4omcc2, d4omcd2, d4omce2, d4omcf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      3. 2453446Domain d4omcc1: 4omc C:109-442 [238475]
        Other proteins in same PDB: d4omca2, d4omcb2, d4omcc2, d4omcd2, d4omce2, d4omcf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      4. 2453447Domain d4omcd1: 4omc D:110-442 [238474]
        Other proteins in same PDB: d4omca2, d4omcb2, d4omcc2, d4omcd2, d4omce2, d4omcf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      5. 2453448Domain d4omce1: 4omc E:110-442 [263317]
        Other proteins in same PDB: d4omca2, d4omcb2, d4omcc2, d4omcd2, d4omce2, d4omcf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      6. 2453449Domain d4omcf1: 4omc F:110-442 [263319]
        Other proteins in same PDB: d4omca2, d4omcb2, d4omcc2, d4omcd2, d4omce2, d4omcf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
    2. Domains for 4omd:
      1. 2453456Domain d4omda1: 4omd A:109-442 [267072]
        Other proteins in same PDB: d4omda2, d4omdb2, d4omdc2, d4omdd2, d4omde2, d4omdf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      2. 2453457Domain d4omdb1: 4omd B:110-442 [267074]
        Other proteins in same PDB: d4omda2, d4omdb2, d4omdc2, d4omdd2, d4omde2, d4omdf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      3. 2453458Domain d4omdc1: 4omd C:109-442 [267076]
        Other proteins in same PDB: d4omda2, d4omdb2, d4omdc2, d4omdd2, d4omde2, d4omdf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      4. 2453459Domain d4omdd1: 4omd D:110-442 [267078]
        Other proteins in same PDB: d4omda2, d4omdb2, d4omdc2, d4omdd2, d4omde2, d4omdf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      5. 2453460Domain d4omde1: 4omd E:110-442 [267080]
        Other proteins in same PDB: d4omda2, d4omdb2, d4omdc2, d4omdd2, d4omde2, d4omdf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      6. 2453461Domain d4omdf1: 4omd F:110-442 [267082]
        Other proteins in same PDB: d4omda2, d4omdb2, d4omdc2, d4omdd2, d4omde2, d4omdf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
    3. Domains for 4ryd:
      1. 2453450Domain d4ryda1: 4ryd A:109-442 [273179]
        Other proteins in same PDB: d4ryda2, d4rydb2, d4rydc2, d4rydd2, d4ryde2, d4rydf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      2. 2453451Domain d4rydb1: 4ryd B:110-442 [273173]
        Other proteins in same PDB: d4ryda2, d4rydb2, d4rydc2, d4rydd2, d4ryde2, d4rydf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      3. 2453452Domain d4rydc1: 4ryd C:109-442 [273177]
        Other proteins in same PDB: d4ryda2, d4rydb2, d4rydc2, d4rydd2, d4ryde2, d4rydf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      4. 2453453Domain d4rydd1: 4ryd D:110-442 [273175]
        Other proteins in same PDB: d4ryda2, d4rydb2, d4rydc2, d4rydd2, d4ryde2, d4rydf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      5. 2453454Domain d4ryde1: 4ryd E:110-442 [273181]
        Other proteins in same PDB: d4ryda2, d4rydb2, d4rydc2, d4rydd2, d4ryde2, d4rydf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
      6. 2453455Domain d4rydf1: 4ryd F:110-442 [273184]
        Other proteins in same PDB: d4ryda2, d4rydb2, d4rydc2, d4rydd2, d4ryde2, d4rydf2
        automated match to d1p8ja2
        complexed with ca, fmt, na
    4. Domain for 4z2a:
    5. Domain for 5jxg:
    6. Domain for 5jxi:
    7. Domain for 5mim:
  13. 2453462Lecanicillium psalliotae [TaxId:73499] [189114] (1 PDB entry)
  14. 2453464Pseudoalteromonas sp. [TaxId:247492] [188095] (2 PDB entries)
    1. Domains for 1wvm:
      1. 2453467Domain d1wvma_: 1wvm A: [161997]
        automated match to d1v6cb_
        complexed with ca, mg
      2. 2453468Domain d1wvmb_: 1wvm B: [161998]
        automated match to d1v6cb_
        complexed with ca, mg
    2. Domains for 1y9z:
      1. 2453465Domain d1y9za_: 1y9z A: [162172]
        automated match to d1v6cb_
        complexed with ca, na, pms, so4, trs
      2. 2453466Domain d1y9zb_: 1y9z B: [162173]
        automated match to d1v6cb_
        complexed with ca, na, pms, so4, trs
  15. 2453469Tritirachium album [TaxId:37998] [187258] (13 PDB entries)
    1. Domain for 2v8b:
    2. Domain for 3aj8:
    3. Domain for 3aj9:
    4. Domain for 3dvq:
    5. Domain for 3dvr:
    6. Domain for 3dvs:
    7. Domain for 3dw1:
    8. Domain for 3dw3:
    9. Domain for 3dwe:
    10. Domain for 3i2y:
    11. Domain for 3i30:
    12. Domain for 3i34:
    13. Domain for 3i37:

More info for Protein automated matches from c.41.1.1: Subtilases

Timeline for Protein automated matches from c.41.1.1: Subtilases: