Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1994319Fold a.39: EF Hand-like [47472] (4 superfamilies)
    core: 4 helices; array of 2 hairpins, opened
  4. 1994320Superfamily a.39.1: EF-hand [47473] (12 families) (S)
    Duplication: consists of two EF-hand units: each is made of two helices connected with calcium-binding loop
  5. 1994753Family a.39.1.5: Calmodulin-like [47502] (24 protein domains)
    Duplication: made with two pairs of EF-hands
  6. 1995301Protein automated matches [190064] (20 species)
    not a true protein

Species:

  1. 1995302African clawed frog (Xenopus laevis) [TaxId:8355] [225045] (4 PDB entries)
    1. Domain for 2col:
    2. Domain for 2kdu:
    3. Domain for 2mes:
    4. Domain for 2rrt:
  2. 1995307Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188855] (3 PDB entries)
    1. Domain for 3fwb:
    2. Domains for 3fwc:
      1. 1995309Domain d3fwca_: 3fwc A: [176101]
        Other proteins in same PDB: d3fwcc_, d3fwcd_, d3fwcg_, d3fwch_, d3fwck_, d3fwcl_, d3fwco_, d3fwcp_
        automated match to d2ggma1
        protein/RNA complex; complexed with so4
      2. 1995310Domain d3fwce_: 3fwc E: [176102]
        Other proteins in same PDB: d3fwcc_, d3fwcd_, d3fwcg_, d3fwch_, d3fwck_, d3fwcl_, d3fwco_, d3fwcp_
        automated match to d2ggma1
        protein/RNA complex; complexed with so4
      3. 1995311Domain d3fwci_: 3fwc I: [176103]
        Other proteins in same PDB: d3fwcc_, d3fwcd_, d3fwcg_, d3fwch_, d3fwck_, d3fwcl_, d3fwco_, d3fwcp_
        automated match to d2ggma1
        protein/RNA complex; complexed with so4
      4. 1995312Domain d3fwcm_: 3fwc M: [176104]
        Other proteins in same PDB: d3fwcc_, d3fwcd_, d3fwcg_, d3fwch_, d3fwck_, d3fwcl_, d3fwco_, d3fwcp_
        automated match to d2ggma1
        protein/RNA complex; complexed with so4
    3. Domains for 4mbe:
      1. 1995313Domain d4mbea_: 4mbe A: [257931]
        Other proteins in same PDB: d4mbec_, d4mbef_
        automated match to d3fwba_
        protein/RNA complex; complexed with ca
      2. 1995314Domain d4mbed_: 4mbe D: [263010]
        Other proteins in same PDB: d4mbec_, d4mbef_
        automated match to d3fwba_
        protein/RNA complex; complexed with ca
  3. 1995315Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [255436] (1 PDB entry)
  4. 1995317Bay scallop (Argopecten irradians) [TaxId:31199] [189156] (2 PDB entries)
    1. Domain for 3jtd:
    2. Domain for 3jvt:
  5. 1995320Chicken (Gallus gallus) [TaxId:9031] [187205] (3 PDB entries)
    1. Domain for 1ggs:
    2. Domain for 2vb6:
    3. Domain for 4bya:
  6. 1995324Cow (Bos taurus) [TaxId:9913] [228970] (3 PDB entries)
    1. Domain for 2i94:
    2. Domain for 4yi8:
    3. Domain for 4yi9:
  7. 1995328Entamoeba histolytica [TaxId:294381] [225835] (3 PDB entries)
    1. Domain for 2m7k:
    2. Domain for 2m7m:
    3. Domains for 3li6:
      1. 1995329Domain d3li6a_: 3li6 A: [212897]
        automated match to d2nxqa_
        complexed with ca
      2. 1995330Domain d3li6d_: 3li6 D: [212898]
        automated match to d2nxqa_
        complexed with ca
      3. 1995331Domain d3li6g_: 3li6 G: [212899]
        automated match to d2nxqa_
        complexed with ca
      4. 1995332Domain d3li6j_: 3li6 J: [212900]
        automated match to d2nxqa_
        complexed with ca
  8. 1995335Fruit fly (Drosophila melanogaster) [TaxId:7227] [258881] (5 PDB entries)
    1. Domains for 4by4:
      1. 1995340Domain d4by4a_: 4by4 A: [261748]
        automated match to d2lcpa_
        complexed with ca, na
      2. 1995341Domain d4by4b_: 4by4 B: [261750]
        automated match to d2lcpa_
        complexed with ca, na
    2. Domains for 4by5:
      1. 1995336Domain d4by5a_: 4by5 A: [258885]
        automated match to d2lcpa_
        complexed with ca, na
      2. 1995337Domain d4by5b_: 4by5 B: [258886]
        automated match to d2lcpa_
        complexed with ca, na
      3. 1995338Domain d4by5c_: 4by5 C: [261749]
        automated match to d2lcpa_
        complexed with ca, na
      4. 1995339Domain d4by5d_: 4by5 D: [258884]
        automated match to d2lcpa_
        complexed with ca, na
    3. Domain for 5aan:
    4. Domain for 5fyx:
    5. Domain for 5g08:
  9. 1995342Human (Homo sapiens) [TaxId:9606] [186813] (24 PDB entries)
    1. Domain for 1w7i:
    2. Domain for 1w7j:
    3. Domains for 1wrk:
      1. 1995344Domain d1wrka_: 1wrk A: [145823]
        automated match to d1ap4a_
        complexed with ca, tfp
      2. 1995345Domain d1wrkb_: 1wrk B: [145824]
        automated match to d1ap4a_
        complexed with ca, tfp
    4. Domains for 1wrl:
      1. 1995350Domain d1wrla_: 1wrl A: [145825]
        automated match to d1ap4a_
        complexed with ca, tfp
      2. 1995351Domain d1wrlb_: 1wrl B: [145826]
        automated match to d1ap4a_
        complexed with ca, tfp
      3. 1995352Domain d1wrlc_: 1wrl C: [145827]
        automated match to d1ap4a_
        complexed with ca, tfp
      4. 1995353Domain d1wrld_: 1wrl D: [145828]
        automated match to d1ap4a_
        complexed with ca, tfp
      5. 1995354Domain d1wrle_: 1wrl E: [145829]
        automated match to d1ap4a_
        complexed with ca, tfp
      6. 1995355Domain d1wrlf_: 1wrl F: [145830]
        automated match to d1ap4a_
        complexed with ca, tfp
    5. Domains for 1y1a:
      1. 1995347Domain d1y1aa_: 1y1a A: [122537]
        automated match to d1dgua_
        complexed with ca, gsh
      2. 1995348Domain d1y1ab_: 1y1a B: [122538]
        automated match to d1dgua_
        complexed with ca, gsh
    6. Domain for 1zot:
    7. Domain for 2d8n:
    8. Domain for 2jt0:
    9. Domain for 2jt3:
    10. Domain for 2jt8:
    11. Domain for 2jtz:
    12. Domain for 2jxl:
    13. Domain for 2kdh:
    14. Domain for 2kfx:
    15. Domain for 2kgb:
    16. Domain for 2l4h:
    17. Domain for 2lcp:
    18. Domain for 2lm5:
    19. Domain for 2mle:
    20. Domain for 2mlf:
    21. Domain for 2n79:
    22. Domain for 3ewt:
    23. Domain for 3ewv:
    24. Domain for 5dsu:
  10. 1995373Jellyfish (Aequorea victoria) [TaxId:6100] [186782] (4 PDB entries)
    1. Domains for 1uhh:
      1. 1995376Domain d1uhha2: 1uhh A:2-189 [119675]
        Other proteins in same PDB: d1uhha3
        automated match to d1ej3a_
        complexed with czp
      2. 1995377Domain d1uhhb_: 1uhh B: [119676]
        Other proteins in same PDB: d1uhha3
        automated match to d1ej3a_
        complexed with czp
    2. Domains for 1uhi:
      1. 1995380Domain d1uhia2: 1uhi A:2-189 [119677]
        Other proteins in same PDB: d1uhia3
        automated match to d1ej3a_
        complexed with czi
      2. 1995381Domain d1uhib_: 1uhi B: [119678]
        Other proteins in same PDB: d1uhia3
        automated match to d1ej3a_
        complexed with czi
    3. Domains for 1uhj:
      1. 1995378Domain d1uhja_: 1uhj A: [119679]
        Other proteins in same PDB: d1uhjb3
        automated match to d1ej3a_
        complexed with czb
      2. 1995379Domain d1uhjb2: 1uhj B:2-189 [119680]
        Other proteins in same PDB: d1uhjb3
        automated match to d1ej3a_
        complexed with czb
    4. Domains for 1uhk:
      1. 1995374Domain d1uhka2: 1uhk A:2-189 [119681]
        Other proteins in same PDB: d1uhka3, d1uhkb3
        automated match to d1ej3a_
        complexed with czn
      2. 1995375Domain d1uhkb2: 1uhk B:2-189 [119682]
        Other proteins in same PDB: d1uhka3, d1uhkb3
        automated match to d1ej3a_
        complexed with czn
  11. 1995382Kluyveromyces lactis [TaxId:284590] [195890] (1 PDB entry)
  12. 1995387Mitrocoma cellularia [TaxId:31874] [261220] (1 PDB entry)
  13. 1995390Mouse (Mus musculus) [TaxId:10090] [187204] (1 PDB entry)
  14. 1995393Obelia longissima [TaxId:32570] [237068] (4 PDB entries)
    1. Domain for 4mrx:
    2. Domain for 4mry:
    3. Domain for 4n1f:
    4. Domains for 4n1g:
      1. 1995395Domain d4n1ga_: 4n1g A: [237069]
        automated match to d1uhka_
        complexed with ca, cei; mutant
      2. 1995396Domain d4n1gb_: 4n1g B: [237071]
        automated match to d1uhka_
        complexed with ca, cei; mutant
  15. 1995399Opsanus tau [TaxId:8068] [255491] (1 PDB entry)
  16. 1995401Placopecten magellanicus [TaxId:6577] [189594] (3 PDB entries)
    1. Domains for 3pn7:
      1. 1995402Domain d3pn7b_: 3pn7 B: [183858]
        automated match to d1kk7y_
        complexed with ca, mg
      2. 1995403Domain d3pn7c_: 3pn7 C: [183859]
        automated match to d1qviz_
        complexed with ca, mg
      3. 1995404Domain d3pn7e_: 3pn7 E: [183860]
        automated match to d1kk7y_
        complexed with ca, mg
      4. 1995405Domain d3pn7f_: 3pn7 F: [183861]
        automated match to d1qviz_
        complexed with ca, mg
    2. Domains for 3ts5:
      1. 1995406Domain d3ts5b_: 3ts5 B: [185926]
        automated match to d1kk7y_
        complexed with ca, mg
      2. 1995407Domain d3ts5c_: 3ts5 C: [185927]
        automated match to d1qviz_
        complexed with ca, mg
      3. 1995408Domain d3ts5e_: 3ts5 E: [185928]
        automated match to d1kk7y_
        complexed with ca, mg
      4. 1995409Domain d3ts5f_: 3ts5 F: [185929]
        automated match to d1qviz_
        complexed with ca, mg
    3. Domains for 3tuy:
      1. 1995410Domain d3tuyb_: 3tuy B: [185960]
        automated match to d1kk7y_
        complexed with ca, mg
      2. 1995411Domain d3tuyc_: 3tuy C: [185961]
        automated match to d1qviz_
        complexed with ca, mg
      3. 1995412Domain d3tuye_: 3tuy E: [185962]
        automated match to d1kk7y_
        complexed with ca, mg
      4. 1995413Domain d3tuyf_: 3tuy F: [185963]
        automated match to d1qviz_
        complexed with ca, mg
  17. 1995414Scherffelia dubia [TaxId:3190] [189616] (1 PDB entry)
  18. 1995417Soybean (Glycine max) [TaxId:3847] [255584] (3 PDB entries)
    1. Domain for 2ro8:
    2. Domain for 2ro9:
    3. Domain for 2roa:
  19. 1995421Thale cress (Arabidopsis thaliana) [TaxId:3702] [194524] (2 PDB entries)
    1. Domains for 4aqr:
      1. 1995422Domain d4aqra_: 4aqr A: [194526]
        automated match to d1rfja_
        complexed with ca
      2. 1995423Domain d4aqrb_: 4aqr B: [194525]
        automated match to d1rfja_
        complexed with ca
    2. Domain for 5a2h:
  20. 1995424Todarodes pacificus [TaxId:6637] [189006] (1 PDB entry)

More info for Protein automated matches from a.39.1.5: Calmodulin-like

Timeline for Protein automated matches from a.39.1.5: Calmodulin-like: