Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2049048Fold b.38: Sm-like fold [50181] (5 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 2049049Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families) (S)
  5. 2049341Family b.38.1.2: Pleiotropic translational regulator Hfq [74939] (2 protein domains)
    forms homohexameric ring structures
  6. 2049457Protein automated matches [190062] (8 species)
    not a true protein

Species:

  1. 2049458Escherichia coli K-12 [TaxId:83333] [189116] (6 PDB entries)
    1. Domains for 3gib:
      1. 2049466Domain d3giba_: 3gib A: [176667]
        automated match to d1hk9d_
        protein/DNA complex; protein/RNA complex; complexed with nhe
      2. 2049467Domain d3gibb_: 3gib B: [176668]
        automated match to d1hk9d_
        protein/DNA complex; protein/RNA complex; complexed with nhe
      3. 2049468Domain d3gibc_: 3gib C: [176669]
        automated match to d1hk9d_
        protein/DNA complex; protein/RNA complex; complexed with nhe
    2. Domains for 3qhs:
      1. 2049469Domain d3qhsa_: 3qhs A: [248886]
        automated match to d3inzf_
      2. 2049470Domain d3qhsb_: 3qhs B: [248887]
        automated match to d3inzf_
      3. 2049471Domain d3qhsc_: 3qhs C: [248888]
        automated match to d3inzf_
      4. 2049472Domain d3qhsd_: 3qhs D: [248889]
        automated match to d3inzf_
      5. 2049473Domain d3qhse_: 3qhs E: [248890]
        automated match to d3inzf_
      6. 2049474Domain d3qhsf_: 3qhs F: [248891]
        automated match to d3inzf_
      7. 2049475Domain d3qhsg_: 3qhs G: [248892]
        automated match to d3inzf_
      8. 2049476Domain d3qhsh_: 3qhs H: [248893]
        automated match to d3inzf_
      9. 2049477Domain d3qhsi_: 3qhs I: [248894]
        automated match to d3inzf_
      10. 2049478Domain d3qhsj_: 3qhs J: [248895]
        automated match to d3inzf_
      11. 2049479Domain d3qhsk_: 3qhs K: [248896]
        automated match to d3inzf_
      12. 2049480Domain d3qhsl_: 3qhs L: [248897]
        automated match to d3inzf_
    3. Domains for 3vu3:
      1. 2049487Domain d3vu3c_: 3vu3 C: [239892]
        Other proteins in same PDB: d3vu3a1, d3vu3a2
        automated match to d3inzf_
        protein/RNA complex; complexed with hem
      2. 2049488Domain d3vu3d_: 3vu3 D: [239893]
        Other proteins in same PDB: d3vu3a1, d3vu3a2
        automated match to d3inzf_
        protein/RNA complex; complexed with hem
      3. 2049489Domain d3vu3e_: 3vu3 E: [239894]
        Other proteins in same PDB: d3vu3a1, d3vu3a2
        automated match to d3inzf_
        protein/RNA complex; complexed with hem
      4. 2049490Domain d3vu3f_: 3vu3 F: [239895]
        Other proteins in same PDB: d3vu3a1, d3vu3a2
        automated match to d3inzf_
        protein/RNA complex; complexed with hem
      5. 2049491Domain d3vu3g_: 3vu3 G: [239896]
        Other proteins in same PDB: d3vu3a1, d3vu3a2
        automated match to d3inzf_
        protein/RNA complex; complexed with hem
      6. 2049492Domain d3vu3h_: 3vu3 H: [239897]
        Other proteins in same PDB: d3vu3a1, d3vu3a2
        automated match to d3inzf_
        protein/RNA complex; complexed with hem
    4. Domains for 4jri:
      1. 2049462Domain d4jria_: 4jri A: [229637]
        automated match to d3quic_
        mutant
      2. 2049463Domain d4jrib_: 4jri B: [235035]
        automated match to d4jrid_
        mutant
      3. 2049464Domain d4jric_: 4jri C: [235036]
        automated match to d4jrid_
        mutant
      4. 2049465Domain d4jrid_: 4jri D: [229638]
        automated match to d3quic_
        mutant
    5. Domains for 4jrk:
      1. 2049459Domain d4jrka_: 4jrk A: [229633]
        automated match to d3quic_
        mutant
      2. 2049460Domain d4jrkb_: 4jrk B: [229632]
        automated match to d3quic_
        mutant
      3. 2049461Domain d4jrkc_: 4jrk C: [229635]
        automated match to d3quic_
        mutant
    6. Domains for 4juv:
      1. 2049481Domain d4juva_: 4juv A: [235045]
        automated match to d4juvb_
        mutant
      2. 2049482Domain d4juvb_: 4juv B: [229634]
        automated match to d3quic_
        mutant
      3. 2049483Domain d4juvc_: 4juv C: [229636]
        automated match to d3quic_
        mutant
      4. 2049484Domain d4juvd_: 4juv D: [235047]
        automated match to d4juvb_
        mutant
      5. 2049485Domain d4juve_: 4juv E: [235046]
        automated match to d4juvb_
        mutant
      6. 2049486Domain d4juvf_: 4juv F: [235048]
        automated match to d4juvb_
        mutant
  2. 2049493Escherichia coli [TaxId:511693] [189765] (3 PDB entries)
    1. Domains for 3qo3:
      1. 2049512Domain d3qo3a_: 3qo3 A: [215323]
        automated match to d3rerb_
        protein/RNA complex; complexed with atp
      2. 2049513Domain d3qo3b_: 3qo3 B: [215324]
        automated match to d3rerb_
        protein/RNA complex; complexed with atp
      3. 2049514Domain d3qo3c_: 3qo3 C: [215325]
        automated match to d3rerb_
        protein/RNA complex; complexed with atp
      4. 2049515Domain d3qo3d_: 3qo3 D: [215326]
        automated match to d3rerb_
        protein/RNA complex; complexed with atp
      5. 2049516Domain d3qo3e_: 3qo3 E: [215327]
        automated match to d3rerb_
        protein/RNA complex; complexed with atp
      6. 2049517Domain d3qo3f_: 3qo3 F: [215328]
        automated match to d3rerb_
        protein/RNA complex; complexed with atp
    2. Domains for 3rer:
      1. 2049494Domain d3rera_: 3rer A: [184909]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp, mg
      2. 2049495Domain d3rerb_: 3rer B: [184910]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp, mg
      3. 2049496Domain d3rerc_: 3rer C: [184911]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp, mg
      4. 2049497Domain d3rerd_: 3rer D: [184912]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp, mg
      5. 2049498Domain d3rere_: 3rer E: [184913]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp, mg
      6. 2049499Domain d3rerf_: 3rer F: [184914]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp, mg
    3. Domains for 3res:
      1. 2049500Domain d3resa_: 3res A: [184915]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp
      2. 2049501Domain d3resb_: 3res B: [184916]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp
      3. 2049502Domain d3resc_: 3res C: [184917]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp
      4. 2049503Domain d3resd_: 3res D: [184918]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp
      5. 2049504Domain d3rese_: 3res E: [184919]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp
      6. 2049505Domain d3resf_: 3res F: [184920]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp
      7. 2049506Domain d3resg_: 3res G: [184921]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp
      8. 2049507Domain d3resh_: 3res H: [184922]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp
      9. 2049508Domain d3resi_: 3res I: [184923]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp
      10. 2049509Domain d3resj_: 3res J: [184924]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp
      11. 2049510Domain d3resk_: 3res K: [184925]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp
      12. 2049511Domain d3resl_: 3res L: [184926]
        automated match to d1hk9e_
        protein/RNA complex; complexed with adp
  3. 2049518Escherichia coli [TaxId:562] [189813] (4 PDB entries)
    1. Domain for 2y90:
    2. Domains for 2yht:
      1. 2049523Domain d2yhta_: 2yht A: [170791]
        automated match to d1hk9e_
      2. 2049524Domain d2yhtb_: 2yht B: [170792]
        automated match to d1hk9e_
      3. 2049525Domain d2yhtc_: 2yht C: [170793]
        automated match to d1hk9e_
      4. 2049526Domain d2yhtd_: 2yht D: [170794]
        automated match to d1hk9e_
      5. 2049527Domain d2yhte_: 2yht E: [170795]
        automated match to d1hk9e_
      6. 2049528Domain d2yhtf_: 2yht F: [170796]
        automated match to d1hk9e_
      7. 2049529Domain d2yhtg_: 2yht G: [170797]
        automated match to d1hk9e_
      8. 2049530Domain d2yhth_: 2yht H: [170798]
        automated match to d1hk9e_
      9. 2049531Domain d2yhti_: 2yht I: [170799]
        automated match to d1hk9e_
      10. 2049532Domain d2yhtj_: 2yht J: [170800]
        automated match to d1hk9e_
      11. 2049533Domain d2yhtk_: 2yht K: [170801]
        automated match to d1hk9e_
      12. 2049534Domain d2yhtl_: 2yht L: [170802]
        automated match to d1hk9e_
    3. Domains for 4jli:
      1. 2049520Domain d4jlia_: 4jli A: [229627]
        automated match to d3quic_
        mutant
      2. 2049521Domain d4jlib_: 4jli B: [229628]
        automated match to d3quic_
        mutant
    4. Domain for 4pno:
  4. 2049535Escherichia coli [TaxId:83333] [276985] (2 PDB entries)
    1. Domain for 4rcb:
    2. Domain for 4rcc:
  5. 2049538Herbaspirillum seropedicae [TaxId:757424] [189857] (1 PDB entry)
  6. 2049545Salmonella enterica [TaxId:99287] [189703] (2 PDB entries)
    1. Domains for 2ylb:
      1. 2049546Domain d2ylba_: 2ylb A: [170846]
        automated match to d1hk9e_
      2. 2049547Domain d2ylbb_: 2ylb B: [170847]
        automated match to d1hk9e_
      3. 2049548Domain d2ylbc_: 2ylb C: [170848]
        automated match to d1hk9e_
      4. 2049549Domain d2ylbd_: 2ylb D: [170849]
        automated match to d1hk9e_
      5. 2049550Domain d2ylbe_: 2ylb E: [170850]
        automated match to d1hk9e_
      6. 2049551Domain d2ylbf_: 2ylb F: [170851]
        automated match to d1hk9e_
    2. Domain for 2ylc:
  7. 2271565Pseudomonas aeruginosa [TaxId:381754] [314866] (1 PDB entry)
  8. 2297591Escherichia coli [TaxId:585035] [340892] (1 PDB entry)

More info for Protein automated matches from b.38.1.2: Pleiotropic translational regulator Hfq

Timeline for Protein automated matches from b.38.1.2: Pleiotropic translational regulator Hfq: