Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1890050Fold d.5: RNase A-like [54075] (1 superfamily)
    contains long curved beta-sheet and 3 helices
  4. 1890051Superfamily d.5.1: RNase A-like [54076] (2 families) (S)
    can be classified as disulfide-rich
  5. 1890052Family d.5.1.1: Ribonuclease A-like [54077] (9 proteins)
  6. 1890445Protein automated matches [190061] (6 species)
    not a true protein

Species:

  1. 1890446Bullfrog (Rana catesbeiana) [TaxId:8400] [255002] (1 PDB entry)
  2. 1890448Cow (Bos taurus) [TaxId:9913] [186780] (70 PDB entries)
    1. Domains for 1u1b:
      1. 1890547Domain d1u1ba_: 1u1b A: [119419]
        automated match to d1a2wa_
        complexed with pax
      2. 1890548Domain d1u1bb_: 1u1b B: [119420]
        automated match to d1a2wa_
        complexed with pax
    2. Domains for 1w4o:
      1. 1890503Domain d1w4oa_: 1w4o A: [120633]
        automated match to d1a2wa_
        complexed with ua3
      2. 1890504Domain d1w4ob_: 1w4o B: [120634]
        automated match to d1a2wa_
        complexed with ua3
    3. Domains for 1w4p:
      1. 1890513Domain d1w4pa_: 1w4p A: [120635]
        automated match to d1a2wa_
        complexed with um3
      2. 1890514Domain d1w4pb_: 1w4p B: [120636]
        automated match to d1a2wa_
        complexed with um3
    4. Domains for 1w4q:
      1. 1890511Domain d1w4qa_: 1w4q A: [120637]
        automated match to d1a2wa_
        complexed with umf
      2. 1890512Domain d1w4qb_: 1w4q B: [120638]
        automated match to d1a2wa_
        complexed with umf
    5. Domains for 1wbu:
      1. 1890536Domain d1wbua_: 1wbu A: [120862]
        automated match to d1a2wa_
        complexed with wbu
      2. 1890537Domain d1wbub_: 1wbu B: [120863]
        automated match to d1a2wa_
        complexed with wbu
    6. Domains for 1z6d:
      1. 1890470Domain d1z6da_: 1z6d A: [124516]
        automated match to d1a2wa_
        complexed with imp
      2. 1890471Domain d1z6db_: 1z6d B: [124517]
        automated match to d1a2wa_
        complexed with imp
    7. Domains for 1z6s:
      1. 1890468Domain d1z6sa_: 1z6s A: [124569]
        automated match to d1a2wa_
        complexed with amp
      2. 1890469Domain d1z6sb_: 1z6s B: [124570]
        automated match to d1a2wa_
        complexed with amp
    8. Domain for 2blp:
    9. Domain for 2blz:
    10. Domain for 2e33:
    11. Domain for 2e3w:
    12. Domains for 2g4w:
      1. 1890540Domain d2g4wa_: 2g4w A: [134613]
        automated match to d1a2wa_
        complexed with cl, so4
      2. 1890541Domain d2g4wb_: 2g4w B: [134614]
        automated match to d1a2wa_
        complexed with cl, so4
    13. Domain for 2g4x:
    14. Domains for 2g8q:
      1. 1890466Domain d2g8qa_: 2g8q A: [134781]
        automated match to d1a2wa_
      2. 1890467Domain d2g8qb_: 2g8q B: [134782]
        automated match to d1a2wa_
    15. Domains for 2g8r:
      1. 1890501Domain d2g8ra_: 2g8r A: [134783]
        automated match to d1a2wa_
        complexed with n3e
      2. 1890502Domain d2g8rb_: 2g8r B: [134784]
        automated match to d1a2wa_
        complexed with n3e
    16. Domain for 2op2:
    17. Domains for 2p42:
      1. 1890509Domain d2p42a_: 2p42 A: [149194]
        Other proteins in same PDB: d2p42b_, d2p42d_
        automated match to d1a2wa_
        protein/RNA complex; complexed with mg
      2. 1890510Domain d2p42c_: 2p42 C: [149196]
        Other proteins in same PDB: d2p42b_, d2p42d_
        automated match to d1a2wa_
        protein/RNA complex; complexed with mg
    18. Domain for 2p43:
    19. Domain for 2p44:
    20. Domain for 2p45:
    21. Domains for 2p46:
      1. 1890558Domain d2p46a_: 2p46 A: [149202]
        Other proteins in same PDB: d2p46b_, d2p46d_
        automated match to d1a2wa_
        protein/RNA complex; complexed with zn
      2. 1890559Domain d2p46c_: 2p46 C: [149203]
        Other proteins in same PDB: d2p46b_, d2p46d_
        automated match to d1a2wa_
        protein/RNA complex; complexed with zn
    22. Domain for 2p47:
    23. Domain for 2p48:
    24. Domain for 2p49:
    25. Domains for 2p4a:
      1. 1890531Domain d2p4aa_: 2p4a A: [149208]
        Other proteins in same PDB: d2p4ab_, d2p4ad_
        automated match to d1a2wa_
        protein/RNA complex; complexed with so4
      2. 1890532Domain d2p4ac_: 2p4a C: [149209]
        Other proteins in same PDB: d2p4ab_, d2p4ad_
        automated match to d1a2wa_
        protein/RNA complex; complexed with so4
    26. Domain for 2qca:
    27. Domains for 2w5g:
      1. 1890507Domain d2w5ga_: 2w5g A: [169063]
        automated match to d1a2wa_
        protein/RNA complex; complexed with atp
      2. 1890508Domain d2w5gb_: 2w5g B: [169064]
        automated match to d1a2wa_
        protein/RNA complex; complexed with atp
    28. Domains for 2w5i:
      1. 1890553Domain d2w5ia_: 2w5i A: [169066]
        automated match to d1a2wa_
        protein/RNA complex; complexed with atp
      2. 1890554Domain d2w5ib_: 2w5i B: [169067]
        automated match to d1a2wa_
        protein/RNA complex; complexed with atp
    29. Domains for 2w5k:
      1. 1890486Domain d2w5ka_: 2w5k A: [169068]
        automated match to d1a2wa_
        protein/RNA complex; complexed with ndp
      2. 1890487Domain d2w5kb_: 2w5k B: [169069]
        automated match to d1a2wa_
        protein/RNA complex; complexed with ndp
    30. Domains for 2w5l:
      1. 1890497Domain d2w5la_: 2w5l A: [169070]
        automated match to d1a2wa_
        protein/RNA complex; complexed with nap
      2. 1890498Domain d2w5lb_: 2w5l B: [169071]
        automated match to d1a2wa_
        protein/RNA complex; complexed with nap
    31. Domains for 2w5m:
      1. 1890517Domain d2w5ma_: 2w5m A: [169072]
        automated match to d1a2wa_
        protein/RNA complex; complexed with pop
      2. 1890518Domain d2w5mb_: 2w5m B: [169073]
        automated match to d1a2wa_
        protein/RNA complex; complexed with pop
    32. Domains for 2xog:
      1. 1890519Domain d2xoga_: 2xog A: [170257]
        automated match to d1a2wa_
        complexed with sfb
      2. 1890520Domain d2xogb_: 2xog B: [170258]
        automated match to d1a2wa_
        complexed with sfb
    33. Domains for 2xoi:
      1. 1890522Domain d2xoia_: 2xoi A: [170259]
        automated match to d1a2wa_
        complexed with sfb
      2. 1890523Domain d2xoib_: 2xoi B: [170260]
        automated match to d1a2wa_
        complexed with sfb
    34. Domain for 3a1r:
    35. Domains for 3d6o:
      1. 1890480Domain d3d6oa_: 3d6o A: [173717]
        automated match to d1a2wa_
        complexed with u1s
      2. 1890481Domain d3d6ob_: 3d6o B: [173718]
        automated match to d1a2wa_
        complexed with u1s
    36. Domains for 3d6p:
      1. 1890482Domain d3d6pa_: 3d6p A: [173719]
        automated match to d1a2wa_
        complexed with u2s
      2. 1890483Domain d3d6pb_: 3d6p B: [173720]
        automated match to d1a2wa_
        complexed with u2s
    37. Domains for 3d6q:
      1. 1890478Domain d3d6qa_: 3d6q A: [173721]
        automated match to d1a2wa_
        complexed with flc, u3s
      2. 1890479Domain d3d6qb_: 3d6q B: [173722]
        automated match to d1a2wa_
        complexed with flc, u3s
    38. Domains for 3d7b:
      1. 1890476Domain d3d7ba_: 3d7b A: [173742]
        automated match to d1a2wa_
        complexed with flc, u4s
      2. 1890477Domain d3d7bb_: 3d7b B: [173743]
        automated match to d1a2wa_
        complexed with flc, u4s
    39. Domains for 3d8y:
      1. 1890542Domain d3d8ya_: 3d8y A: [173756]
        automated match to d1a2wa_
        complexed with flc, t3s
      2. 1890543Domain d3d8yb_: 3d8y B: [173757]
        automated match to d1a2wa_
        complexed with flc, t3s
    40. Domains for 3d8z:
      1. 1890551Domain d3d8za_: 3d8z A: [173758]
        automated match to d1a2wa_
        complexed with flc, txs
      2. 1890552Domain d3d8zb_: 3d8z B: [173759]
        automated match to d1a2wa_
        complexed with flc, txs
    41. Domains for 3djo:
      1. 1890488Domain d3djoa_: 3djo A: [173997]
        automated match to d11baa_
        complexed with act, u2p
      2. 1890489Domain d3djob_: 3djo B: [173998]
        automated match to d11baa_
        complexed with act, u2p
    42. Domains for 3djp:
      1. 1890495Domain d3djpa_: 3djp A: [173999]
        automated match to d11baa_
        complexed with ua3
      2. 1890496Domain d3djpb_: 3djp B: [174000]
        automated match to d11baa_
        complexed with ua3
    43. Domains for 3djq:
      1. 1890472Domain d3djqa_: 3djq A: [174001]
        automated match to d11baa_
        complexed with udp
      2. 1890473Domain d3djqb_: 3djq B: [174002]
        automated match to d11baa_
        complexed with udp
    44. Domains for 3djv:
      1. 1890474Domain d3djva_: 3djv A: [174010]
        automated match to d11baa_
        complexed with c3p
      2. 1890475Domain d3djvb_: 3djv B: [174011]
        automated match to d11baa_
        complexed with c3p
    45. Domains for 3djx:
      1. 1890490Domain d3djxa_: 3djx A: [174012]
        automated match to d11baa_
        complexed with c5p
      2. 1890491Domain d3djxb_: 3djx B: [174013]
        automated match to d11baa_
        complexed with c5p
    46. Domains for 3dxg:
      1. 1890461Domain d3dxga_: 3dxg A: [174323]
        automated match to d1a2wa_
        complexed with u5p
      2. 1890462Domain d3dxgb_: 3dxg B: [174324]
        automated match to d1a2wa_
        complexed with u5p
    47. Domains for 3dxh:
      1. 1890459Domain d3dxha_: 3dxh A: [174325]
        automated match to d1a2wa_
        complexed with udp
      2. 1890460Domain d3dxhb_: 3dxh B: [174326]
        automated match to d1a2wa_
        complexed with udp
    48. Domains for 3eux:
      1. 1890499Domain d3euxa_: 3eux A: [175224]
        automated match to d1a2wa_
      2. 1890500Domain d3euxb_: 3eux B: [175225]
        automated match to d1a2wa_
    49. Domains for 3euy:
      1. 1890538Domain d3euya_: 3euy A: [175226]
        automated match to d1a2wa_
        complexed with dio
      2. 1890539Domain d3euyb_: 3euy B: [175227]
        automated match to d1a2wa_
        complexed with dio
    50. Domains for 3euz:
      1. 1890529Domain d3euza_: 3euz A: [175228]
        automated match to d1a2wa_
        complexed with dmf
      2. 1890530Domain d3euzb_: 3euz B: [175229]
        automated match to d1a2wa_
        complexed with dmf
    51. Domains for 3ev0:
      1. 1890524Domain d3ev0a_: 3ev0 A: [175230]
        automated match to d1a2wa_
        complexed with dms
      2. 1890525Domain d3ev0b_: 3ev0 B: [175231]
        automated match to d1a2wa_
        complexed with dms
    52. Domains for 3ev1:
      1. 1890549Domain d3ev1a_: 3ev1 A: [175232]
        automated match to d1a2wa_
        complexed with hez
      2. 1890550Domain d3ev1b_: 3ev1 B: [175233]
        automated match to d1a2wa_
        complexed with hez
    53. Domains for 3ev2:
      1. 1890544Domain d3ev2a_: 3ev2 A: [175234]
        automated match to d1a2wa_
        complexed with ipa
      2. 1890545Domain d3ev2b_: 3ev2 B: [175235]
        automated match to d1a2wa_
        complexed with ipa
    54. Domains for 3ev3:
      1. 1890505Domain d3ev3a_: 3ev3 A: [175236]
        automated match to d1a2wa_
        complexed with tbu
      2. 1890506Domain d3ev3b_: 3ev3 B: [175237]
        automated match to d1a2wa_
        complexed with tbu
    55. Domains for 3ev4:
      1. 1890534Domain d3ev4a_: 3ev4 A: [175238]
        automated match to d1a2wa_
        complexed with etf
      2. 1890535Domain d3ev4b_: 3ev4 B: [175239]
        automated match to d1a2wa_
        complexed with etf
    56. Domains for 3ev5:
      1. 1890515Domain d3ev5a_: 3ev5 A: [175240]
        automated match to d1a2wa_
        complexed with tmo
      2. 1890516Domain d3ev5b_: 3ev5 B: [175241]
        automated match to d1a2wa_
        complexed with tmo
    57. Domains for 3ev6:
      1. 1890527Domain d3ev6a_: 3ev6 A: [175242]
        automated match to d1a2wa_
        complexed with rsf
      2. 1890528Domain d3ev6b_: 3ev6 B: [175243]
        automated match to d1a2wa_
        complexed with rsf
    58. Domain for 3i67:
    59. Domain for 3i6f:
    60. Domain for 3i6h:
    61. Domain for 3i6j:
    62. Domain for 3i7w:
    63. Domain for 3i7x:
    64. Domain for 3i7y:
    65. Domains for 3jw1:
      1. 1890492Domain d3jw1a_: 3jw1 A: [178855]
        automated match to d1a2wa_
        complexed with u5p
      2. 1890493Domain d3jw1b_: 3jw1 B: [178856]
        automated match to d1a2wa_
        complexed with u5p
    66. Domain for 3lxo:
    67. Domain for 3mzq:
    68. Domain for 3mzr:
    69. Domain for 3qsk:
    70. Domain for 4k7m:
  3. 1890563Frog (Rana pipiens) [TaxId:8404] [188156] (4 PDB entries)
    1. Domain for 1yv7:
    2. Domain for 2kb6:
    3. Domains for 3fd7:
      1. 1890565Domain d3fd7a_: 3fd7 A: [175705]
        automated match to d1onca_
        complexed with edo, gol, so4
      2. 1890566Domain d3fd7b_: 3fd7 B: [175706]
        automated match to d1onca_
        complexed with edo, gol, so4
    4. Domain for 3u01:
  4. 1890569Human (Homo sapiens) [TaxId:9606] [186903] (7 PDB entries)
    1. Domains for 2e0j:
      1. 1890570Domain d2e0ja_: 2e0j A: [163783]
        automated match to d1dzaa_
        mutant
      2. 1890571Domain d2e0jb_: 2e0j B: [163784]
        automated match to d1dzaa_
        mutant
    2. Domains for 2e0l:
      1. 1890572Domain d2e0la_: 2e0l A: [163785]
        automated match to d1dzaa_
        complexed with cd, cl; mutant
      2. 1890573Domain d2e0lb_: 2e0l B: [163786]
        automated match to d1dzaa_
        complexed with cd, cl; mutant
    3. Domains for 2e0m:
      1. 1890575Domain d2e0ma_: 2e0m A: [163787]
        automated match to d1dzaa_
        complexed with cd, cl; mutant
      2. 1890576Domain d2e0mb_: 2e0m B: [163788]
        automated match to d1dzaa_
        complexed with cd, cl; mutant
    4. Domains for 2e0o:
      1. 1890579Domain d2e0oa_: 2e0o A: [163789]
        automated match to d1dzaa_
        complexed with gol, so4; mutant
      2. 1890580Domain d2e0ob_: 2e0o B: [163790]
        automated match to d1dzaa_
        complexed with gol, so4; mutant
    5. Domain for 4ahj:
    6. Domains for 4b36:
      1. 1890577Domain d4b36a_: 4b36 A: [201562]
        automated match to d4b36b_
        complexed with cl
      2. 1890578Domain d4b36b_: 4b36 B: [194194]
        automated match to d1a4yb_
        complexed with cl
    7. Domain for 5e13:
  5. 1890582Mouse (Mus musculus) [TaxId:10090] [187495] (5 PDB entries)
    1. Domain for 2bwk:
    2. Domain for 2bwl:
    3. Domains for 3tsr:
      1. 1890588Domain d3tsra_: 3tsr A: [194678]
        Other proteins in same PDB: d3tsre_, d3tsrf_, d3tsrg_, d3tsrh_
        automated match to d1rraa_
        complexed with edo, peg
      2. 1890589Domain d3tsrb_: 3tsr B: [200873]
        Other proteins in same PDB: d3tsre_, d3tsrf_, d3tsrg_, d3tsrh_
        automated match to d3tsra_
        complexed with edo, peg
      3. 1890590Domain d3tsrc_: 3tsr C: [200874]
        Other proteins in same PDB: d3tsre_, d3tsrf_, d3tsrg_, d3tsrh_
        automated match to d3tsra_
        complexed with edo, peg
      4. 1890591Domain d3tsrd_: 3tsr D: [200875]
        Other proteins in same PDB: d3tsre_, d3tsrf_, d3tsrg_, d3tsrh_
        automated match to d3tsra_
        complexed with edo, peg
    4. Domain for 3zbv:
    5. Domains for 3zbw:
      1. 1890586Domain d3zbwa_: 3zbw A: [194169]
        automated match to d2bwla_
        complexed with acy, so4, zn
      2. 1890587Domain d3zbwb_: 3zbw B: [194168]
        automated match to d2bwla_
        complexed with acy, so4, zn
  6. 1890592Norway rat (Rattus norvegicus) [TaxId:10116] [259282] (2 PDB entries)
    1. Domains for 4qfi:
      1. 1890593Domain d4qfia_: 4qfi A: [267306]
        automated match to d4qfja_
        complexed with acy, zn
      2. 1890594Domain d4qfib_: 4qfi B: [267307]
        automated match to d4qfja_
        complexed with acy, zn
    2. Domains for 4qfj:
      1. 1890595Domain d4qfja_: 4qfj A: [259283]
        automated match to d2bwla_
        complexed with acy, h1s, zn
      2. 1890596Domain d4qfjb_: 4qfj B: [263696]
        automated match to d4qfja_
        complexed with acy, h1s, zn

More info for Protein automated matches from d.5.1.1: Ribonuclease A-like

Timeline for Protein automated matches from d.5.1.1: Ribonuclease A-like: