Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1074916Class a: All alpha proteins [46456] (284 folds)
  3. 1097039Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 1097040Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 1097041Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 proteins)
  6. 1097817Protein automated matches [190059] (12 species)
    not a true protein

Species:

  1. 1097818Artificial gene [TaxId:32630] [189856] (1 PDB entry)
  2. 1097821Biomphalaria glabrata [TaxId:6526] [188120] (1 PDB entry)
  3. 1097824Branchiostoma floridae [TaxId:7739] [188654] (1 PDB entry)
  4. 1097826Cotton bollworm (Helicoverpa armigera) [TaxId:29058] [189564] (1 PDB entry)
  5. 1097828Escherichia coli [TaxId:469008] [189841] (1 PDB entry)
  6. 1097830Gallus gallus [TaxId:9031] [195567] (1 PDB entry)
  7. 1097832Homo sapiens [TaxId:9606] [192490] (10 PDB entries)
    1. Domain for 2j4a:
    2. Domain for 3d57:
    3. Domain for 3et3:
    4. Domains for 3r8a:
      1. 1097842Domain d3r8aa_: 3r8a A: [195834]
        automated match to d1rdtd_
        complexed with hig
      2. 1097843Domain d3r8ab_: 3r8a B: [195833]
        automated match to d1rdtd_
        complexed with hig
    5. Domain for 3uuc:
    6. Domain for 3vhw:
    7. Domains for 4a4v:
      1. 1097837Domain d4a4va_: 4a4v A: [192492]
        automated match to d3ty0a_
        complexed with yfd
      2. 1097838Domain d4a4vb_: 4a4v B: [192810]
        automated match to d3ty0a_
        complexed with yfd
    8. Domains for 4a4w:
      1. 1097835Domain d4a4wa_: 4a4w A: [192809]
        automated match to d3ty0a_
        complexed with yfb
      2. 1097836Domain d4a4wb_: 4a4w B: [192491]
        automated match to d3ty0a_
        complexed with yfb
    9. Domain for 4apu:
    10. Domain for 4is8:
  8. 1097846Human (Homo sapiens) [TaxId:9606] [187214] (102 PDB entries)
    1. Domain for 1txi:
    2. Domain for 1xj7:
    3. Domains for 1xqc:
      1. 1097909Domain d1xqca_: 1xqc A: [122233]
        automated match to d1qkua_
        complexed with aej
      2. 1097910Domain d1xqcb_: 1xqc B: [122234]
        automated match to d1qkua_
        complexed with aej
      3. 1097911Domain d1xqcc_: 1xqc C: [122235]
        automated match to d1qkua_
        complexed with aej
      4. 1097912Domain d1xqcd_: 1xqc D: [122236]
        automated match to d1qkua_
        complexed with aej
    4. Domains for 1y9r:
      1. 1097920Domain d1y9ra_: 1y9r A: [162170]
        automated match to d1m2za_
        complexed with 1ca; mutant
      2. 1097921Domain d1y9rb_: 1y9r B: [162171]
        automated match to d1m2za_
        complexed with 1ca; mutant
    5. Domains for 1ya3:
      1. 1097982Domain d1ya3a_: 1ya3 A: [162174]
        automated match to d1m2za_
        complexed with str; mutant
      2. 1097983Domain d1ya3b_: 1ya3 B: [162175]
        automated match to d1m2za_
        complexed with str; mutant
      3. 1097984Domain d1ya3c_: 1ya3 C: [162176]
        automated match to d1m2za_
        complexed with str; mutant
    6. Domain for 1yok:
    7. Domains for 1yuc:
      1. 1097872Domain d1yuca_: 1yuc A: [162303]
        automated match to d1pk5a_
        complexed with eph, gol
      2. 1097873Domain d1yucb_: 1yuc B: [162304]
        automated match to d1pk5a_
        complexed with eph, gol
    8. Domain for 1z95:
    9. Domain for 1zdu:
    10. Domain for 1zgy:
    11. Domain for 2a3i:
    12. Domain for 2aa2:
    13. Domain for 2aa6:
    14. Domains for 2abi:
      1. 1097942Domain d2abia_: 2abi A: [162747]
        automated match to d1m2za_
        complexed with 1ca
      2. 1097943Domain d2abib_: 2abi B: [162748]
        automated match to d1m2za_
        complexed with 1ca
      3. 1097944Domain d2abic_: 2abi C: [162749]
        automated match to d1m2za_
        complexed with 1ca
    15. Domains for 2ath:
      1. 1097946Domain d2atha_: 2ath A: [127291]
        automated match to d1fm6d_
        complexed with 3ea
      2. 1097947Domain d2athb_: 2ath B: [127292]
        automated match to d1fm6d_
        complexed with 3ea
    16. Domains for 2baw:
      1. 1097961Domain d2bawa_: 2baw A: [128248]
        automated match to d1gwxa_
        complexed with b7g, vca
      2. 1097962Domain d2bawb_: 2baw B: [128249]
        automated match to d1gwxa_
        complexed with b7g, vca
    17. Domain for 2e2r:
    18. Domains for 2f4b:
      1. 1097924Domain d2f4ba_: 2f4b A: [132918]
        automated match to d1fm6d_
        complexed with eha
      2. 1097925Domain d2f4bb_: 2f4b B: [132919]
        automated match to d1fm6d_
        complexed with eha
    19. Domain for 2fvj:
    20. Domains for 2gl8:
      1. 1097986Domain d2gl8a_: 2gl8 A: [164756]
        automated match to d1lbda_
      2. 1097987Domain d2gl8b_: 2gl8 B: [164757]
        automated match to d1lbda_
      3. 1097988Domain d2gl8c_: 2gl8 C: [164758]
        automated match to d1lbda_
      4. 1097989Domain d2gl8d_: 2gl8 D: [164759]
        automated match to d1lbda_
    21. Domain for 2h77:
    22. Domain for 2h79:
    23. Domain for 2ham:
    24. Domain for 2har:
    25. Domain for 2has:
    26. Domain for 2hb7:
    27. Domain for 2hb8:
    28. Domains for 2hwq:
      1. 1097922Domain d2hwqa_: 2hwq A: [147427]
        automated match to d1fm6d_
        complexed with dry
      2. 1097923Domain d2hwqb_: 2hwq B: [161457]
        automated match to d1fm6d_
        complexed with dry
    29. Domains for 2hwr:
      1. 1097972Domain d2hwra_: 2hwr A: [147428]
        automated match to d1fm6d_
        complexed with drd
      2. 1097973Domain d2hwrb_: 2hwr B: [161458]
        automated match to d1fm6d_
        complexed with drd
    30. Domains for 2j14:
      1. 1098013Domain d2j14a_: 2j14 A: [137935]
        automated match to d1gwxa_
        complexed with gni
      2. 1098014Domain d2j14b_: 2j14 B: [137936]
        automated match to d1gwxa_
        complexed with gni
    31. Domains for 2jj3:
      1. 1097928Domain d2jj3a_: 2jj3 A: [148127]
        automated match to d1l2jb_
        protein/DNA complex; complexed with jj3
      2. 1097929Domain d2jj3b_: 2jj3 B: [148128]
        automated match to d1l2jb_
        protein/DNA complex; complexed with jj3
    32. Domains for 2oax:
      1. 1097966Domain d2oaxa_: 2oax A: [166608]
        automated match to d1m2za_
        complexed with snl; mutant
      2. 1097967Domain d2oaxb_: 2oax B: [166609]
        automated match to d1m2za_
        complexed with snl; mutant
      3. 1097968Domain d2oaxc_: 2oax C: [166610]
        automated match to d1m2za_
        complexed with snl; mutant
      4. 1097969Domain d2oaxd_: 2oax D: [166611]
        automated match to d1m2za_
        complexed with snl; mutant
      5. 1097970Domain d2oaxe_: 2oax E: [166612]
        automated match to d1m2za_
        complexed with snl; mutant
      6. 1097971Domain d2oaxf_: 2oax F: [166613]
        automated match to d1m2za_
        complexed with snl; mutant
    33. Domains for 2om9:
      1. 1098007Domain d2om9a_: 2om9 A: [139142]
        automated match to d3prga_
        complexed with aja
      2. 1098008Domain d2om9b_: 2om9 B: [139143]
        automated match to d3prga_
        complexed with aja
      3. 1098009Domain d2om9c_: 2om9 C: [139144]
        automated match to d3prga_
        complexed with aja
      4. 1098010Domain d2om9d_: 2om9 D: [139145]
        automated match to d3prga_
        complexed with aja
    34. Domains for 2vsr:
      1. 1097898Domain d2vsra_: 2vsr A: [153529]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 9ho
      2. 1097899Domain d2vsrb_: 2vsr B: [153530]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 9ho
    35. Domains for 2vst:
      1. 1097959Domain d2vsta_: 2vst A: [153531]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 243
      2. 1097960Domain d2vstb_: 2vst B: [153532]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 243
    36. Domains for 2vv0:
      1. 1097980Domain d2vv0a_: 2vv0 A: [153605]
        automated match to d1wm0x_
        protein/DNA complex; complexed with hxa
      2. 1097981Domain d2vv0b_: 2vv0 B: [153606]
        automated match to d1wm0x_
        protein/DNA complex; complexed with hxa
    37. Domains for 2vv1:
      1. 1097938Domain d2vv1a_: 2vv1 A: [153607]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 4hd
      2. 1097939Domain d2vv1b_: 2vv1 B: [161587]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 4hd
    38. Domains for 2vv2:
      1. 1098005Domain d2vv2a_: 2vv2 A: [153608]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 5he
      2. 1098006Domain d2vv2b_: 2vv2 B: [153609]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 5he
    39. Domains for 2vv3:
      1. 1098011Domain d2vv3a_: 2vv3 A: [153610]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 4r8
      2. 1098012Domain d2vv3b_: 2vv3 B: [153611]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 4r8
    40. Domains for 2vv4:
      1. 1097950Domain d2vv4a_: 2vv4 A: [153612]
        automated match to d1wm0x_
        complexed with 6ob, 6oc
      2. 1097951Domain d2vv4b_: 2vv4 B: [161588]
        automated match to d1wm0x_
        complexed with 6ob, 6oc
    41. Domains for 2w8y:
      1. 1097858Domain d2w8ya_: 2w8y A: [169112]
        automated match to d1a28a_
        complexed with 486, edo, ndr, so4
      2. 1097859Domain d2w8yb_: 2w8y B: [169113]
        automated match to d1a28a_
        complexed with 486, edo, ndr, so4
    42. Domains for 2xyj:
      1. 1097948Domain d2xyja_: 2xyj A: [170482]
        automated match to d1gwxa_
        complexed with 1pe, wlm
      2. 1097949Domain d2xyjb_: 2xyj B: [170483]
        automated match to d1gwxa_
        complexed with 1pe, wlm
    43. Domains for 2xyx:
      1. 1097997Domain d2xyxa_: 2xyx A: [170490]
        automated match to d1gwxa_
        complexed with bog, z00
      2. 1097998Domain d2xyxb_: 2xyx B: [170491]
        automated match to d1gwxa_
        complexed with bog, z00
    44. Domain for 2yat:
    45. Domains for 2yfe:
      1. 1097893Domain d2yfea_: 2yfe A: [191837]
        automated match to d3ty0a_
        complexed with yfe
      2. 1097894Domain d2yfeb_: 2yfe B: [191838]
        automated match to d3ty0a_
        complexed with yfe
    46. Domain for 2ylo:
    47. Domain for 2ylp:
    48. Domain for 2ylq:
    49. Domain for 2zas:
    50. Domain for 2zbs:
    51. Domain for 2zkc:
    52. Domain for 3a3z:
    53. Domain for 3a40:
    54. Domain for 3a78:
    55. Domains for 3ads:
      1. 1097934Domain d3adsa_: 3ads A: [172013]
        automated match to d1nyxa_
        protein/DNA complex; complexed with imn
      2. 1097935Domain d3adsb_: 3ads B: [172014]
        automated match to d1nyxa_
        protein/DNA complex; complexed with imn
    56. Domains for 3adt:
      1. 1098003Domain d3adta_: 3adt A: [172015]
        automated match to d1nyxa_
        protein/DNA complex; complexed with hid
      2. 1098004Domain d3adtb_: 3adt B: [172016]
        automated match to d1nyxa_
        protein/DNA complex; complexed with hid
    57. Domains for 3adu:
      1. 1098001Domain d3adua_: 3adu A: [172017]
        automated match to d1nyxa_
        protein/DNA complex; complexed with myi
      2. 1098002Domain d3adub_: 3adu B: [172018]
        automated match to d1nyxa_
        protein/DNA complex; complexed with myi
    58. Domains for 3adv:
      1. 1097940Domain d3adva_: 3adv A: [172019]
        automated match to d1nyxa_
        protein/DNA complex; complexed with sro
      2. 1097941Domain d3advb_: 3adv B: [172020]
        automated match to d1nyxa_
        protein/DNA complex; complexed with sro
    59. Domains for 3adw:
      1. 1097913Domain d3adwa_: 3adw A: [172021]
        automated match to d1nyxa_
        protein/DNA complex; complexed with myi, ocr
      2. 1097914Domain d3adwb_: 3adw B: [172022]
        automated match to d1nyxa_
        protein/DNA complex; complexed with myi, ocr
    60. Domains for 3adx:
      1. 1097915Domain d3adxa_: 3adx A: [172023]
        automated match to d1nyxa_
        protein/DNA complex; complexed with imn, nro
      2. 1097916Domain d3adxb_: 3adx B: [172024]
        automated match to d1nyxa_
        protein/DNA complex; complexed with imn, nro
    61. Domains for 3bej:
      1. 1097889Domain d3beja_: 3bej A: [155186]
        automated match to d1osha_
        protein/DNA complex; complexed with muf, yt3
      2. 1097890Domain d3bejb_: 3bej B: [155187]
        automated match to d1osha_
        protein/DNA complex; complexed with muf, yt3
    62. Domains for 3cdp:
      1. 1098022Domain d3cdpa_: 3cdp A: [173160]
        automated match to d1nyxa_
        protein/DNA complex; complexed with yrg
      2. 1098023Domain d3cdpb_: 3cdp B: [173161]
        automated match to d1nyxa_
        protein/DNA complex; complexed with yrg
    63. Domains for 3cds:
      1. 1098015Domain d3cdsa_: 3cds A: [173164]
        automated match to d1nyxa_
        protein/DNA complex; complexed with grr
      2. 1098016Domain d3cdsb_: 3cds B: [173165]
        automated match to d1nyxa_
        protein/DNA complex; complexed with grr
    64. Domain for 3cs8:
    65. Domains for 3cwd:
      1. 1097990Domain d3cwda_: 3cwd A: [157049]
        automated match to d1fm6d_
        complexed with lna, lnb
      2. 1097991Domain d3cwdb_: 3cwd B: [157050]
        automated match to d1fm6d_
        complexed with lna, lnb
    66. Domain for 3d57:
    67. Domains for 3d5f:
      1. 1097992Domain d3d5fa_: 3d5f A: [157397]
        automated match to d1gwxa_
        protein/DNA complex; complexed with l41
      2. 1097993Domain d3d5fb_: 3d5f B: [157398]
        automated match to d1gwxa_
        protein/DNA complex; complexed with l41
    68. Domain for 3dct:
    69. Domain for 3dcu:
    70. Domain for 3et0:
    71. Domain for 3fs1:
    72. Domain for 3fur:
    73. Domain for 3fxv:
    74. Domains for 3g8o:
      1. 1097875Domain d3g8oa_: 3g8o A: [176423]
        automated match to d1a28a_
        complexed with 30x, so4
      2. 1097876Domain d3g8ob_: 3g8o B: [176424]
        automated match to d1a28a_
        complexed with 30x, so4
    75. Domains for 3gbk:
      1. 1097963Domain d3gbka_: 3gbk A: [176499]
        automated match to d1fm6d_
        protein/DNA complex; complexed with 2pq
      2. 1097964Domain d3gbkb_: 3gbk B: [176500]
        automated match to d1fm6d_
        protein/DNA complex; complexed with 2pq
    76. Domains for 3gn8:
      1. 1097957Domain d3gn8a_: 3gn8 A: [176774]
        automated match to d1m2za_
        complexed with dex
      2. 1097958Domain d3gn8b_: 3gn8 B: [176775]
        automated match to d1m2za_
        complexed with dex
    77. Domains for 3h52:
      1. 1098017Domain d3h52a_: 3h52 A: [177189]
        automated match to d1m2za_
        complexed with 486, gol
      2. 1098018Domain d3h52b_: 3h52 B: [177190]
        automated match to d1m2za_
        complexed with 486, gol
      3. 1098019Domain d3h52c_: 3h52 C: [177191]
        automated match to d1m2za_
        complexed with 486, gol
      4. 1098020Domain d3h52d_: 3h52 D: [177192]
        automated match to d1m2za_
        complexed with 486, gol
    78. Domains for 3hm1:
      1. 1097974Domain d3hm1a_: 3hm1 A: [177686]
        automated match to d1qkua_
        protein/DNA complex; complexed with j3z
      2. 1097975Domain d3hm1b_: 3hm1 B: [177687]
        automated match to d1qkua_
        protein/DNA complex; complexed with j3z
    79. Domain for 3hzf:
    80. Domains for 3k22:
      1. 1097904Domain d3k22a_: 3k22 A: [178972]
        automated match to d1m2za_
        complexed with jzr, jzs
      2. 1097905Domain d3k22b_: 3k22 B: [178973]
        automated match to d1m2za_
        complexed with jzr, jzs
    81. Domain for 3k6p:
    82. Domains for 3kfc:
      1. 1097976Domain d3kfca_: 3kfc A: [179327]
        automated match to d1p8da_
        protein/DNA complex; complexed with 61x
      2. 1097977Domain d3kfcb_: 3kfc B: [179328]
        automated match to d1p8da_
        protein/DNA complex; complexed with 61x
      3. 1097978Domain d3kfcc_: 3kfc C: [179329]
        automated match to d1p8da_
        protein/DNA complex; complexed with 61x
      4. 1097979Domain d3kfcd_: 3kfc D: [179330]
        automated match to d1p8da_
        protein/DNA complex; complexed with 61x
    83. Domains for 3l03:
      1. 1097869Domain d3l03a_: 3l03 A: [179833]
        automated match to d1qkua_
        protein/DNA complex; complexed with 4oh, cl, gol
      2. 1097870Domain d3l03b_: 3l03 B: [179834]
        automated match to d1qkua_
        protein/DNA complex; complexed with 4oh, cl, gol
    84. Domain for 3l0e:
    85. Domain for 3lmp:
    86. Domain for 3okh:
    87. Domains for 3oki:
      1. 1097907Domain d3okia_: 3oki A: [183075]
        automated match to d1osha_
        protein/DNA complex; complexed with oki
      2. 1097908Domain d3okic_: 3oki C: [183076]
        automated match to d1osha_
        protein/DNA complex; complexed with oki
    88. Domains for 3olf:
      1. 1097884Domain d3olfa_: 3olf A: [183134]
        automated match to d1osha_
        protein/DNA complex; complexed with olf
      2. 1097885Domain d3olfc_: 3olf C: [183135]
        automated match to d1osha_
        protein/DNA complex; complexed with olf
    89. Domains for 3omk:
      1. 1097887Domain d3omka_: 3omk A: [183173]
        automated match to d1osha_
        protein/DNA complex; complexed with omk
      2. 1097888Domain d3omkc_: 3omk C: [183174]
        automated match to d1osha_
        protein/DNA complex; complexed with omk
    90. Domains for 3omm:
      1. 1097918Domain d3omma_: 3omm A: [183175]
        automated match to d1osha_
        protein/DNA complex; complexed with omm
      2. 1097919Domain d3ommc_: 3omm C: [183176]
        automated match to d1osha_
        protein/DNA complex; complexed with omm
    91. Domains for 3oof:
      1. 1097932Domain d3oofa_: 3oof A: [183203]
        automated match to d1osha_
        protein/DNA complex; complexed with oof
      2. 1097933Domain d3oofc_: 3oof C: [183204]
        automated match to d1osha_
        protein/DNA complex; complexed with oof
    92. Domains for 3ook:
      1. 1097952Domain d3ooka_: 3ook A: [183205]
        automated match to d1osha_
        protein/DNA complex; complexed with ook
      2. 1097953Domain d3ookc_: 3ook C: [183206]
        automated match to d1osha_
        protein/DNA complex; complexed with ook
    93. Domains for 3plz:
      1. 1097855Domain d3plza_: 3plz A: [183842]
        automated match to d1pk5a_
        complexed with 470, edo
      2. 1097856Domain d3plzb_: 3plz B: [183843]
        automated match to d1pk5a_
        complexed with 470, edo
    94. Domains for 3q95:
      1. 1097891Domain d3q95a_: 3q95 A: [184282]
        automated match to d1qkua_
        complexed with cl, esl
      2. 1097892Domain d3q95b_: 3q95 B: [184283]
        automated match to d1qkua_
        complexed with cl, esl
    95. Domains for 3q97:
      1. 1097895Domain d3q97a_: 3q97 A: [184284]
        automated match to d1qkua_
        complexed with cl, fmt, gol, q97, srr
      2. 1097896Domain d3q97b_: 3q97 B: [184285]
        automated match to d1qkua_
        complexed with cl, fmt, gol, q97, srr
    96. Domain for 3u9q:
    97. Domains for 3uuc:
      1. 1097901Domain d3uuca_: 3uuc A: [194773]
        automated match to d3q95b_
        complexed with 0d1
      2. 1097902Domain d3uucb_: 3uuc B: [194775]
        automated match to d3q95b_
        complexed with 0d1
      3. 1097903Domain d3uucd_: 3uuc D: [194774]
        automated match to d3q95b_
        complexed with 0d1
    98. Domain for 3vhv:
    99. Domains for 3zr7:
      1. 1097851Domain d3zr7a_: 3zr7 A: [186527]
        automated match to d1a28a_
        complexed with gol, or8, so4
      2. 1097852Domain d3zr7b_: 3zr7 B: [186528]
        automated match to d1a28a_
        complexed with gol, or8, so4
    100. Domains for 3zra:
      1. 1097879Domain d3zraa_: 3zra A: [186529]
        automated match to d1a28a_
        complexed with orb, so4
      2. 1097880Domain d3zrab_: 3zra B: [186530]
        automated match to d1a28a_
        complexed with orb, so4
    101. Domains for 3zrb:
      1. 1097860Domain d3zrba_: 3zrb A: [186531]
        automated match to d1a28a_
        complexed with gol, or8, orc, so4
      2. 1097861Domain d3zrbb_: 3zrb B: [186532]
        automated match to d1a28a_
        complexed with gol, or8, orc, so4
    102. Domain for 4hlw:
  9. 1098024Mouse (Mus musculus) [TaxId:10090] [189464] (3 PDB entries)
    1. Domain for 3mne:
    2. Domain for 3mno:
    3. Domain for 3mnp:
  10. 1098028Norway rat (Rattus norvegicus) [TaxId:10116] [187147] (3 PDB entries)
    1. Domain for 2j7x:
    2. Domain for 2j7y:
      • 1098029Domain d2j7ya_: 2j7y A: [138130]
        automated match to d1qkna_
        protein/DNA complex; complexed with bct, e3o, edo, so4
    3. Domain for 2zfx:
  11. 1098032Tobacco budworm (Heliothis virescens) [TaxId:7102] [187215] (1 PDB entry)
  12. 1098034Tribolium castaneum [TaxId:7070] [188215] (1 PDB entry)

More info for Protein automated matches from a.123.1.1: Nuclear receptor ligand-binding domain

Timeline for Protein automated matches from a.123.1.1: Nuclear receptor ligand-binding domain: