Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 901761Class a: All alpha proteins [46456] (284 folds)
  3. 923257Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 923258Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 923259Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 proteins)
  6. 923994Protein automated matches [190059] (10 species)
    not a true protein

Species:

  1. 923995Artificial gene [TaxId:32630] [189856] (1 PDB entry)
  2. 923998Biomphalaria glabrata [TaxId:6526] [188120] (1 PDB entry)
  3. 924001Branchiostoma floridae [TaxId:7739] [188654] (1 PDB entry)
  4. 924003Cotton bollworm (Helicoverpa armigera) [TaxId:29058] [189564] (1 PDB entry)
  5. 924005Escherichia coli [TaxId:469008] [189841] (1 PDB entry)
  6. 924007Human (Homo sapiens) [TaxId:9606] [187214] (97 PDB entries)
    1. Domain for 1txi:
    2. Domain for 1xj7:
    3. Domains for 1xqc:
      1. 924064Domain d1xqca_: 1xqc A: [122233]
        automated match to d1qkua_
        complexed with aej
      2. 924065Domain d1xqcb_: 1xqc B: [122234]
        automated match to d1qkua_
        complexed with aej
      3. 924066Domain d1xqcc_: 1xqc C: [122235]
        automated match to d1qkua_
        complexed with aej
      4. 924067Domain d1xqcd_: 1xqc D: [122236]
        automated match to d1qkua_
        complexed with aej
    4. Domains for 1y9r:
      1. 924075Domain d1y9ra_: 1y9r A: [162170]
        automated match to d1m2za_
        complexed with 1ca; mutant
      2. 924076Domain d1y9rb_: 1y9r B: [162171]
        automated match to d1m2za_
        complexed with 1ca; mutant
    5. Domains for 1ya3:
      1. 924133Domain d1ya3a_: 1ya3 A: [162174]
        automated match to d1m2za_
        complexed with str; mutant
      2. 924134Domain d1ya3b_: 1ya3 B: [162175]
        automated match to d1m2za_
        complexed with str; mutant
      3. 924135Domain d1ya3c_: 1ya3 C: [162176]
        automated match to d1m2za_
        complexed with str; mutant
    6. Domain for 1yok:
    7. Domains for 1yuc:
      1. 924033Domain d1yuca_: 1yuc A: [162303]
        automated match to d1pk5a_
        complexed with eph, gol
      2. 924034Domain d1yucb_: 1yuc B: [162304]
        automated match to d1pk5a_
        complexed with eph, gol
    8. Domain for 1z95:
    9. Domain for 1zdu:
    10. Domain for 1zgy:
    11. Domain for 2a3i:
    12. Domains for 2abi:
      1. 924094Domain d2abia_: 2abi A: [162747]
        automated match to d1m2za_
        complexed with 1ca
      2. 924095Domain d2abib_: 2abi B: [162748]
        automated match to d1m2za_
        complexed with 1ca
      3. 924096Domain d2abic_: 2abi C: [162749]
        automated match to d1m2za_
        complexed with 1ca
    13. Domains for 2ath:
      1. 924100Domain d2atha_: 2ath A: [127291]
        automated match to d1fm6d_
        complexed with 3ea
      2. 924101Domain d2athb_: 2ath B: [127292]
        automated match to d1fm6d_
        complexed with 3ea
    14. Domains for 2baw:
      1. 924112Domain d2bawa_: 2baw A: [128248]
        automated match to d1gwxa_
        complexed with b7g, vca
      2. 924113Domain d2bawb_: 2baw B: [128249]
        automated match to d1gwxa_
        complexed with b7g, vca
    15. Domain for 2e2r:
    16. Domains for 2f4b:
      1. 924079Domain d2f4ba_: 2f4b A: [132918]
        automated match to d1fm6d_
        complexed with eha
      2. 924080Domain d2f4bb_: 2f4b B: [132919]
        automated match to d1fm6d_
        complexed with eha
    17. Domain for 2fvj:
    18. Domains for 2gl8:
      1. 924137Domain d2gl8a_: 2gl8 A: [164756]
        automated match to d1lbda_
      2. 924138Domain d2gl8b_: 2gl8 B: [164757]
        automated match to d1lbda_
      3. 924139Domain d2gl8c_: 2gl8 C: [164758]
        automated match to d1lbda_
      4. 924140Domain d2gl8d_: 2gl8 D: [164759]
        automated match to d1lbda_
    19. Domain for 2h77:
    20. Domain for 2h79:
    21. Domain for 2ham:
    22. Domain for 2har:
    23. Domain for 2has:
    24. Domain for 2hb7:
    25. Domain for 2hb8:
    26. Domains for 2hwq:
      1. 924077Domain d2hwqa_: 2hwq A: [147427]
        automated match to d1fm6d_
        complexed with dry
      2. 924078Domain d2hwqb_: 2hwq B: [161457]
        automated match to d1fm6d_
        complexed with dry
    27. Domains for 2hwr:
      1. 924125Domain d2hwra_: 2hwr A: [147428]
        automated match to d1fm6d_
        complexed with drd
      2. 924126Domain d2hwrb_: 2hwr B: [161458]
        automated match to d1fm6d_
        complexed with drd
    28. Domains for 2j14:
      1. 924164Domain d2j14a_: 2j14 A: [137935]
        automated match to d1gwxa_
        complexed with gni
      2. 924165Domain d2j14b_: 2j14 B: [137936]
        automated match to d1gwxa_
        complexed with gni
    29. Domains for 2jj3:
      1. 924083Domain d2jj3a_: 2jj3 A: [148127]
        automated match to d1l2jb_
        protein/DNA complex; complexed with jj3
      2. 924084Domain d2jj3b_: 2jj3 B: [148128]
        automated match to d1l2jb_
        protein/DNA complex; complexed with jj3
    30. Domains for 2oax:
      1. 924119Domain d2oaxa_: 2oax A: [166608]
        automated match to d1m2za_
        complexed with snl; mutant
      2. 924120Domain d2oaxb_: 2oax B: [166609]
        automated match to d1m2za_
        complexed with snl; mutant
      3. 924121Domain d2oaxc_: 2oax C: [166610]
        automated match to d1m2za_
        complexed with snl; mutant
      4. 924122Domain d2oaxd_: 2oax D: [166611]
        automated match to d1m2za_
        complexed with snl; mutant
      5. 924123Domain d2oaxe_: 2oax E: [166612]
        automated match to d1m2za_
        complexed with snl; mutant
      6. 924124Domain d2oaxf_: 2oax F: [166613]
        automated match to d1m2za_
        complexed with snl; mutant
    31. Domains for 2om9:
      1. 924160Domain d2om9a_: 2om9 A: [139142]
        automated match to d3prga_
        complexed with aja
      2. 924161Domain d2om9b_: 2om9 B: [139143]
        automated match to d3prga_
        complexed with aja
      3. 924162Domain d2om9c_: 2om9 C: [139144]
        automated match to d3prga_
        complexed with aja
      4. 924163Domain d2om9d_: 2om9 D: [139145]
        automated match to d3prga_
        complexed with aja
    32. Domains for 2vsr:
      1. 924059Domain d2vsra_: 2vsr A: [153529]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 9ho
      2. 924060Domain d2vsrb_: 2vsr B: [153530]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 9ho
    33. Domains for 2vst:
      1. 924116Domain d2vsta_: 2vst A: [153531]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 243
      2. 924117Domain d2vstb_: 2vst B: [153532]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 243
    34. Domains for 2vv0:
      1. 924141Domain d2vv0a_: 2vv0 A: [153605]
        automated match to d1wm0x_
        protein/DNA complex; complexed with hxa
      2. 924142Domain d2vv0b_: 2vv0 B: [153606]
        automated match to d1wm0x_
        protein/DNA complex; complexed with hxa
    35. Domains for 2vv1:
      1. 924097Domain d2vv1a_: 2vv1 A: [153607]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 4hd
      2. 924098Domain d2vv1b_: 2vv1 B: [161587]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 4hd
    36. Domains for 2vv2:
      1. 924158Domain d2vv2a_: 2vv2 A: [153608]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 5he
      2. 924159Domain d2vv2b_: 2vv2 B: [153609]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 5he
    37. Domains for 2vv3:
      1. 924172Domain d2vv3a_: 2vv3 A: [153610]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 4r8
      2. 924173Domain d2vv3b_: 2vv3 B: [153611]
        automated match to d1wm0x_
        protein/DNA complex; complexed with 4r8
    38. Domains for 2vv4:
      1. 924107Domain d2vv4a_: 2vv4 A: [153612]
        automated match to d1wm0x_
        complexed with 6ob, 6oc
      2. 924108Domain d2vv4b_: 2vv4 B: [161588]
        automated match to d1wm0x_
        complexed with 6ob, 6oc
    39. Domains for 2w8y:
      1. 924019Domain d2w8ya_: 2w8y A: [169112]
        automated match to d1a28a_
        complexed with 486, edo, ndr, so4
      2. 924020Domain d2w8yb_: 2w8y B: [169113]
        automated match to d1a28a_
        complexed with 486, edo, ndr, so4
    40. Domains for 2xyj:
      1. 924102Domain d2xyja_: 2xyj A: [170482]
        automated match to d1gwxa_
        complexed with 1pe, wlm
      2. 924103Domain d2xyjb_: 2xyj B: [170483]
        automated match to d1gwxa_
        complexed with 1pe, wlm
    41. Domains for 2xyx:
      1. 924150Domain d2xyxa_: 2xyx A: [170490]
        automated match to d1gwxa_
        complexed with bog, z00
      2. 924151Domain d2xyxb_: 2xyx B: [170491]
        automated match to d1gwxa_
        complexed with bog, z00
    42. Domain for 2yat:
    43. Domain for 2ylo:
    44. Domain for 2ylp:
    45. Domain for 2ylq:
    46. Domain for 2zas:
    47. Domain for 2zbs:
    48. Domain for 2zkc:
    49. Domain for 3a3z:
    50. Domain for 3a40:
    51. Domain for 3a78:
    52. Domains for 3ads:
      1. 924089Domain d3adsa_: 3ads A: [172013]
        automated match to d1nyxa_
        protein/DNA complex; complexed with imn
      2. 924090Domain d3adsb_: 3ads B: [172014]
        automated match to d1nyxa_
        protein/DNA complex; complexed with imn
    53. Domains for 3adt:
      1. 924156Domain d3adta_: 3adt A: [172015]
        automated match to d1nyxa_
        protein/DNA complex; complexed with hid
      2. 924157Domain d3adtb_: 3adt B: [172016]
        automated match to d1nyxa_
        protein/DNA complex; complexed with hid
    54. Domains for 3adu:
      1. 924154Domain d3adua_: 3adu A: [172017]
        automated match to d1nyxa_
        protein/DNA complex; complexed with myi
      2. 924155Domain d3adub_: 3adu B: [172018]
        automated match to d1nyxa_
        protein/DNA complex; complexed with myi
    55. Domains for 3adv:
      1. 924092Domain d3adva_: 3adv A: [172019]
        automated match to d1nyxa_
        protein/DNA complex; complexed with sro
      2. 924093Domain d3advb_: 3adv B: [172020]
        automated match to d1nyxa_
        protein/DNA complex; complexed with sro
    56. Domains for 3adw:
      1. 924068Domain d3adwa_: 3adw A: [172021]
        automated match to d1nyxa_
        protein/DNA complex; complexed with myi, ocr
      2. 924069Domain d3adwb_: 3adw B: [172022]
        automated match to d1nyxa_
        protein/DNA complex; complexed with myi, ocr
    57. Domains for 3adx:
      1. 924070Domain d3adxa_: 3adx A: [172023]
        automated match to d1nyxa_
        protein/DNA complex; complexed with imn, nro
      2. 924071Domain d3adxb_: 3adx B: [172024]
        automated match to d1nyxa_
        protein/DNA complex; complexed with imn, nro
    58. Domains for 3bej:
      1. 924048Domain d3beja_: 3bej A: [155186]
        automated match to d1osha_
        protein/DNA complex; complexed with muf, yt3
      2. 924049Domain d3bejb_: 3bej B: [155187]
        automated match to d1osha_
        protein/DNA complex; complexed with muf, yt3
    59. Domains for 3cdp:
      1. 924175Domain d3cdpa_: 3cdp A: [173160]
        automated match to d1nyxa_
        protein/DNA complex; complexed with yrg
      2. 924176Domain d3cdpb_: 3cdp B: [173161]
        automated match to d1nyxa_
        protein/DNA complex; complexed with yrg
    60. Domains for 3cds:
      1. 924166Domain d3cdsa_: 3cds A: [173164]
        automated match to d1nyxa_
        protein/DNA complex; complexed with grr
      2. 924167Domain d3cdsb_: 3cds B: [173165]
        automated match to d1nyxa_
        protein/DNA complex; complexed with grr
    61. Domain for 3cs8:
    62. Domains for 3cwd:
      1. 924143Domain d3cwda_: 3cwd A: [157049]
        automated match to d1fm6d_
        complexed with lna, lnb
      2. 924144Domain d3cwdb_: 3cwd B: [157050]
        automated match to d1fm6d_
        complexed with lna, lnb
    63. Domain for 3d57:
    64. Domains for 3d5f:
      1. 924145Domain d3d5fa_: 3d5f A: [157397]
        automated match to d1gwxa_
        protein/DNA complex; complexed with l41
      2. 924146Domain d3d5fb_: 3d5f B: [157398]
        automated match to d1gwxa_
        protein/DNA complex; complexed with l41
    65. Domain for 3dct:
    66. Domain for 3dcu:
    67. Domain for 3fs1:
    68. Domain for 3fur:
    69. Domain for 3fxv:
    70. Domain for 3g8n:
    71. Domains for 3g8o:
      1. 924036Domain d3g8oa_: 3g8o A: [176423]
        automated match to d1a28a_
        complexed with 30x, so4
      2. 924037Domain d3g8ob_: 3g8o B: [176424]
        automated match to d1a28a_
        complexed with 30x, so4
    72. Domains for 3gbk:
      1. 924114Domain d3gbka_: 3gbk A: [176499]
        automated match to d1fm6d_
        protein/DNA complex; complexed with 2pq
      2. 924115Domain d3gbkb_: 3gbk B: [176500]
        automated match to d1fm6d_
        protein/DNA complex; complexed with 2pq
    73. Domains for 3gn8:
      1. 924110Domain d3gn8a_: 3gn8 A: [176774]
        automated match to d1m2za_
        complexed with dex
      2. 924111Domain d3gn8b_: 3gn8 B: [176775]
        automated match to d1m2za_
        complexed with dex
    74. Domains for 3h52:
      1. 924168Domain d3h52a_: 3h52 A: [177189]
        automated match to d1m2za_
        complexed with 486, gol
      2. 924169Domain d3h52b_: 3h52 B: [177190]
        automated match to d1m2za_
        complexed with 486, gol
      3. 924170Domain d3h52c_: 3h52 C: [177191]
        automated match to d1m2za_
        complexed with 486, gol
      4. 924171Domain d3h52d_: 3h52 D: [177192]
        automated match to d1m2za_
        complexed with 486, gol
    75. Domains for 3hm1:
      1. 924127Domain d3hm1a_: 3hm1 A: [177686]
        automated match to d1qkua_
        protein/DNA complex; complexed with j3z
      2. 924128Domain d3hm1b_: 3hm1 B: [177687]
        automated match to d1qkua_
        protein/DNA complex; complexed with j3z
    76. Domain for 3hzf:
    77. Domains for 3k22:
      1. 924057Domain d3k22a_: 3k22 A: [178972]
        automated match to d1m2za_
        complexed with jzr, jzs
      2. 924058Domain d3k22b_: 3k22 B: [178973]
        automated match to d1m2za_
        complexed with jzr, jzs
    78. Domain for 3k6p:
    79. Domains for 3kfc:
      1. 924129Domain d3kfca_: 3kfc A: [179327]
        automated match to d1p8da_
        protein/DNA complex; complexed with 61x
      2. 924130Domain d3kfcb_: 3kfc B: [179328]
        automated match to d1p8da_
        protein/DNA complex; complexed with 61x
      3. 924131Domain d3kfcc_: 3kfc C: [179329]
        automated match to d1p8da_
        protein/DNA complex; complexed with 61x
      4. 924132Domain d3kfcd_: 3kfc D: [179330]
        automated match to d1p8da_
        protein/DNA complex; complexed with 61x
    80. Domains for 3l03:
      1. 924030Domain d3l03a_: 3l03 A: [179833]
        automated match to d1qkua_
        protein/DNA complex; complexed with 4oh, cl, gol
      2. 924031Domain d3l03b_: 3l03 B: [179834]
        automated match to d1qkua_
        protein/DNA complex; complexed with 4oh, cl, gol
    81. Domain for 3l0e:
    82. Domain for 3lmp:
    83. Domain for 3okh:
    84. Domains for 3oki:
      1. 924062Domain d3okia_: 3oki A: [183075]
        automated match to d1osha_
        protein/DNA complex; complexed with oki
      2. 924063Domain d3okic_: 3oki C: [183076]
        automated match to d1osha_
        protein/DNA complex; complexed with oki
    85. Domains for 3olf:
      1. 924043Domain d3olfa_: 3olf A: [183134]
        automated match to d1osha_
        protein/DNA complex; complexed with olf
      2. 924044Domain d3olfc_: 3olf C: [183135]
        automated match to d1osha_
        protein/DNA complex; complexed with olf
    86. Domains for 3omk:
      1. 924046Domain d3omka_: 3omk A: [183173]
        automated match to d1osha_
        protein/DNA complex; complexed with omk
      2. 924047Domain d3omkc_: 3omk C: [183174]
        automated match to d1osha_
        protein/DNA complex; complexed with omk
    87. Domains for 3omm:
      1. 924073Domain d3omma_: 3omm A: [183175]
        automated match to d1osha_
        protein/DNA complex; complexed with omm
      2. 924074Domain d3ommc_: 3omm C: [183176]
        automated match to d1osha_
        protein/DNA complex; complexed with omm
    88. Domains for 3oof:
      1. 924087Domain d3oofa_: 3oof A: [183203]
        automated match to d1osha_
        protein/DNA complex; complexed with oof
      2. 924088Domain d3oofc_: 3oof C: [183204]
        automated match to d1osha_
        protein/DNA complex; complexed with oof
    89. Domains for 3ook:
      1. 924104Domain d3ooka_: 3ook A: [183205]
        automated match to d1osha_
        protein/DNA complex; complexed with ook
      2. 924105Domain d3ookc_: 3ook C: [183206]
        automated match to d1osha_
        protein/DNA complex; complexed with ook
    90. Domains for 3plz:
      1. 924016Domain d3plza_: 3plz A: [183842]
        automated match to d1pk5a_
        complexed with 470, edo
      2. 924017Domain d3plzb_: 3plz B: [183843]
        automated match to d1pk5a_
        complexed with 470, edo
    91. Domains for 3q95:
      1. 924050Domain d3q95a_: 3q95 A: [184282]
        automated match to d1qkua_
        complexed with cl, esl
      2. 924051Domain d3q95b_: 3q95 B: [184283]
        automated match to d1qkua_
        complexed with cl, esl
    92. Domains for 3q97:
      1. 924053Domain d3q97a_: 3q97 A: [184284]
        automated match to d1qkua_
        complexed with cl, fmt, gol, q97, srr
      2. 924054Domain d3q97b_: 3q97 B: [184285]
        automated match to d1qkua_
        complexed with cl, fmt, gol, q97, srr
    93. Domain for 3u9q:
    94. Domain for 3vhv:
    95. Domains for 3zr7:
      1. 924012Domain d3zr7a_: 3zr7 A: [186527]
        automated match to d1a28a_
        complexed with gol, or8, so4
      2. 924013Domain d3zr7b_: 3zr7 B: [186528]
        automated match to d1a28a_
        complexed with gol, or8, so4
    96. Domains for 3zra:
      1. 924039Domain d3zraa_: 3zra A: [186529]
        automated match to d1a28a_
        complexed with orb, so4
      2. 924040Domain d3zrab_: 3zra B: [186530]
        automated match to d1a28a_
        complexed with orb, so4
    97. Domains for 3zrb:
      1. 924021Domain d3zrba_: 3zrb A: [186531]
        automated match to d1a28a_
        complexed with gol, or8, orc, so4
      2. 924022Domain d3zrbb_: 3zrb B: [186532]
        automated match to d1a28a_
        complexed with gol, or8, orc, so4
  7. 924177Mouse (Mus musculus) [TaxId:10090] [189464] (3 PDB entries)
    1. Domain for 3mne:
    2. Domain for 3mno:
    3. Domain for 3mnp:
  8. 924181Norway rat (Rattus norvegicus) [TaxId:10116] [187147] (3 PDB entries)
    1. Domain for 2j7x:
    2. Domain for 2j7y:
      • 924182Domain d2j7ya_: 2j7y A: [138130]
        automated match to d1qkna_
        protein/DNA complex; complexed with bct, e3o, edo, so4
    3. Domain for 2zfx:
  9. 924185Tobacco budworm (Heliothis virescens) [TaxId:7102] [187215] (1 PDB entry)
  10. 924187Tribolium castaneum [TaxId:7070] [188215] (1 PDB entry)

More info for Protein automated matches from a.123.1.1: Nuclear receptor ligand-binding domain

Timeline for Protein automated matches from a.123.1.1: Nuclear receptor ligand-binding domain:

  • Protein automated matches from a.123.1.1: Nuclear receptor ligand-binding domain is new in SCOPe 2.01-stable
  • Protein automated matches from a.123.1.1: Nuclear receptor ligand-binding domain appears in SCOPe 2.02
  • Protein automated matches from a.123.1.1: Nuclear receptor ligand-binding domain appears in the current release, SCOPe 2.07