Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.129: TBP-like [55944] (11 superfamilies)
    beta-alpha-beta(4)-alpha
  4. Superfamily d.129.3: Bet v1-like [55961] (11 families) (S)
    contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix
  5. Family d.129.3.1: Pathogenesis-related protein 10 (PR10)-like [55962] (5 proteins)
  6. Protein automated matches [190058] (11 species)
    not a true protein

Species:

  1. Apple (Malus domestica) [TaxId:3750] [329831] (1 PDB entry)
  2. Peanut (Arachis hypogaea) [TaxId:3818] [397678] (5 PDB entries)
    1. Domains for 6v8h:
      1. Domain d6v8ha_: 6v8h A: [397694]
        automated match to d1ifva_
        complexed with so4
      2. Domain d6v8hc_: 6v8h C: [397706]
        automated match to d1ifva_
        complexed with so4
      3. Domain d6v8hg_: 6v8h G: [398001]
        automated match to d1ifva_
        complexed with so4
      4. Domain d6v8hj_: 6v8h J: [398028]
        automated match to d1ifva_
        complexed with so4
      5. Domain d6v8hl_: 6v8h L: [397679]
        automated match to d1ifva_
        complexed with so4
      6. Domain d6v8hm_: 6v8h M: [397964]
        automated match to d1ifva_
        complexed with so4
      7. Domain d6v8hn_: 6v8h N: [397712]
        automated match to d1ifva_
        complexed with so4
      8. Domain d6v8ho_: 6v8h O: [397995]
        automated match to d1ifva_
        complexed with so4
    2. Domains for 6v8j:
      1. Domain d6v8ja_: 6v8j A: [397771]
        automated match to d1ifva_
        complexed with na, so4
      2. Domain d6v8jb_: 6v8j B: [397782]
        automated match to d1ifva_
        complexed with na, so4
      3. Domain d6v8jc_: 6v8j C: [397758]
        automated match to d1ifva_
        complexed with na, so4
      4. Domain d6v8jd_: 6v8j D: [397774]
        automated match to d1ifva_
        complexed with na, so4
    3. Domains for 6v8l:
      1. Domain d6v8la_: 6v8l A: [397764]
        automated match to d1ifva_
        complexed with dcr, so4
      2. Domain d6v8lb_: 6v8l B: [397780]
        automated match to d1ifva_
        complexed with dcr, so4
      3. Domain d6v8lc_: 6v8l C: [397767]
        automated match to d1ifva_
        complexed with dcr, so4
      4. Domain d6v8ld_: 6v8l D: [397776]
        automated match to d1ifva_
        complexed with dcr, so4
    4. Domains for 6v8m:
      1. Domain d6v8ma_: 6v8m A: [397705]
        automated match to d1ifva_
        complexed with 2an, so4
      2. Domain d6v8mb_: 6v8m B: [397684]
        automated match to d1ifva_
        complexed with 2an, so4
    5. Domains for 6v8s:
      1. Domain d6v8sa_: 6v8s A: [397862]
        automated match to d1ifva_
        complexed with 2an, so4
      2. Domain d6v8sb_: 6v8s B: [397715]
        automated match to d1ifva_
        complexed with 2an, so4
      3. Domain d6v8sc_: 6v8s C: [397892]
        automated match to d1ifva_
        complexed with 2an, so4
      4. Domain d6v8sd_: 6v8s D: [397731]
        automated match to d1ifva_
        complexed with 2an, so4
      5. Domain d6v8se_: 6v8s E: [397755]
        automated match to d1ifva_
        complexed with 2an, so4
      6. Domain d6v8sf_: 6v8s F: [397916]
        automated match to d1ifva_
        complexed with 2an, so4
      7. Domain d6v8sg_: 6v8s G: [397737]
        automated match to d1ifva_
        complexed with 2an, so4
      8. Domain d6v8sh_: 6v8s H: [397766]
        automated match to d1ifva_
        complexed with 2an, so4
      9. Domain d6v8si_: 6v8s I: [397789]
        automated match to d1ifva_
        complexed with 2an, so4
      10. Domain d6v8sj_: 6v8s J: [397730]
        automated match to d1ifva_
        complexed with 2an, so4
      11. Domain d6v8sk_: 6v8s K: [397734]
        automated match to d1ifva_
        complexed with 2an, so4
      12. Domain d6v8sl_: 6v8s L: [397756]
        automated match to d1ifva_
        complexed with 2an, so4
      13. Domain d6v8sm_: 6v8s M: [397777]
        automated match to d1ifva_
        complexed with 2an, so4
      14. Domain d6v8sn_: 6v8s N: [397757]
        automated match to d1ifva_
        complexed with 2an, so4
      15. Domain d6v8so_: 6v8s O: [397834]
        automated match to d1ifva_
        complexed with 2an, so4
      16. Domain d6v8sp_: 6v8s P: [397724]
        automated match to d1ifva_
        complexed with 2an, so4
  3. Betula pendula [TaxId:3505] [195294] (4 PDB entries)
    1. Domain for 3k78:
    2. Domain for 4a84:
    3. Domain for 4a8u:
    4. Domain for 4a8v:
  4. Carrot (Daucus carota) [TaxId:4039] [189035] (1 PDB entry)
  5. Corylus avellana [TaxId:13451] [369994] (5 PDB entries)
    1. Domain for 6gq9:
    2. Domain for 6y3h:
    3. Domain for 6y3i:
    4. Domain for 6y3k:
    5. Domain for 6y3l:
  6. Fagus sylvatica [TaxId:28930] [355743] (1 PDB entry)
  7. Fragaria ananassa [TaxId:3747] [378413] (4 PDB entries)
    1. Domains for 6st8:
      1. Domain d6st8a1: 6st8 A:2-160 [378414]
        Other proteins in same PDB: d6st8a2, d6st8b2
        automated match to d1e09a_
      2. Domain d6st8b1: 6st8 B:2-160 [378463]
        Other proteins in same PDB: d6st8a2, d6st8b2
        automated match to d1e09a_
    2. Domains for 6st9:
      1. Domain d6st9a1: 6st9 A:2-160 [378429]
        Other proteins in same PDB: d6st9a2, d6st9b2
        automated match to d1e09a_
        complexed with cl; mutant
      2. Domain d6st9b1: 6st9 B:2-160 [378418]
        Other proteins in same PDB: d6st9a2, d6st9b2
        automated match to d1e09a_
        complexed with cl; mutant
    3. Domains for 6sta:
      1. Domain d6staa1: 6sta A:2-160 [378455]
        Other proteins in same PDB: d6staa2, d6stab2
        automated match to d1h2oa_
        mutant
      2. Domain d6stab1: 6sta B:2-160 [378435]
        Other proteins in same PDB: d6staa2, d6stab2
        automated match to d1h2oa_
        mutant
    4. Domains for 6stb:
      1. Domain d6stba1: 6stb A:2-160 [378416]
        Other proteins in same PDB: d6stba2, d6stbb2
        automated match to d1e09a_
        mutant
      2. Domain d6stbb1: 6stb B:2-160 [378426]
        Other proteins in same PDB: d6stba2, d6stbb2
        automated match to d1e09a_
        mutant
  8. Pachyrhizus erosus [TaxId:109171] [186778] (2 PDB entries)
    1. Domain for 1tw0:
    2. Domains for 1txc:
      1. Domain d1txca2: 1txc A:1-147 [119384]
        Other proteins in same PDB: d1txca3, d1txcb3
        automated match to d1icxa_
        complexed with 2an
      2. Domain d1txcb2: 1txc B:1-147 [119385]
        Other proteins in same PDB: d1txca3, d1txcb3
        automated match to d1icxa_
        complexed with 2an
  9. Prunus persica [TaxId:3760] [407500] (1 PDB entry)
  10. Soybean (Glycine max) [TaxId:3847] [255325] (1 PDB entry)
  11. Yellow lupine (Lupinus luteus) [TaxId:3873] [186854] (4 PDB entries)
    1. Domain for 2qim:
    2. Domain for 3e85:
    3. Domain for 5mxb:
    4. Domain for 5mxw:

More info for Protein automated matches from d.129.3.1: Pathogenesis-related protein 10 (PR10)-like

Timeline for Protein automated matches from d.129.3.1: Pathogenesis-related protein 10 (PR10)-like: