Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1336838Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1339265Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 1339836Family c.1.8.3: beta-glycanases [51487] (27 proteins)
    consist of a number of sequence families
  6. 1340396Protein automated matches [190057] (15 species)
    not a true protein

Species:

  1. 1340397Bacillus agaradhaerens [TaxId:76935] [187246] (1 PDB entry)
  2. 1340399Bacillus halodurans [TaxId:86665] [188453] (1 PDB entry)
  3. 1340401Bacillus licheniformis [TaxId:1402] [187025] (3 PDB entries)
    1. Domain for 2ccr:
    2. Domains for 2gft:
      1. 1340402Domain d2gfta_: 2gft A: [164682]
        automated match to d1ur0b_
        complexed with ca; mutant
      2. 1340403Domain d2gftb_: 2gft B: [164683]
        automated match to d1ur0b_
        complexed with ca; mutant
    3. Domains for 2j74:
      1. 1340405Domain d2j74a_: 2j74 A: [147901]
        automated match to d1ur0b_
        complexed with b2g, b4g, ca
      2. 1340406Domain d2j74b_: 2j74 B: [147902]
        automated match to d1ur0b_
        complexed with b2g, b4g, ca
  4. 1340407Bacillus sp. [TaxId:65673] [187690] (2 PDB entries)
    1. Domains for 2f8q:
      1. 1340408Domain d2f8qa_: 2f8q A: [164282]
        automated match to d1hiza_
        complexed with mg
      2. 1340409Domain d2f8qb_: 2f8q B: [164283]
        automated match to d1hiza_
        complexed with mg
    2. Domains for 2fgl:
      1. 1340410Domain d2fgla_: 2fgl A: [164353]
        automated match to d1hiza_
        complexed with lxc, mg
      2. 1340411Domain d2fglb_: 2fgl B: [164354]
        automated match to d1hiza_
        complexed with lxc, mg
  5. 1340412Bacillus sp. [TaxId:89769] [189058] (3 PDB entries)
    1. Domain for 3emc:
    2. Domain for 3emq:
    3. Domain for 3emz:
  6. 1340416Cellulomonas fimi [TaxId:1708] [231537] (1 PDB entry)
  7. 1340419Clostridium thermocellum [TaxId:1515] [187247] (4 PDB entries)
    1. Domain for 2bvd:
    2. Domain for 2cip:
    3. Domain for 2v3g:
    4. Domain for 2vi0:
  8. 1340424Emericella nidulans [TaxId:162425] [226738] (1 PDB entry)
  9. 1340426Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId:155077] [188920] (1 PDB entry)
  10. 1340428Rubber tree (Hevea brasiliensis) [TaxId:3981] [189057] (4 PDB entries)
    1. Domains for 3em5:
      1. 1340429Domain d3em5a_: 3em5 A: [175079]
        automated match to d2cyga1
        complexed with nag, peg
      2. 1340430Domain d3em5b_: 3em5 B: [175080]
        automated match to d2cyga1
        complexed with nag, peg
      3. 1340431Domain d3em5c_: 3em5 C: [175081]
        automated match to d2cyga1
        complexed with nag, peg
      4. 1340432Domain d3em5d_: 3em5 D: [175082]
        automated match to d2cyga1
        complexed with nag, peg
    2. Domains for 3f55:
      1. 1340437Domain d3f55a_: 3f55 A: [175473]
        automated match to d2cyga1
        complexed with cac, flc, nag
      2. 1340438Domain d3f55b_: 3f55 B: [175474]
        automated match to d2cyga1
        complexed with cac, flc, nag
      3. 1340439Domain d3f55c_: 3f55 C: [175475]
        automated match to d2cyga1
        complexed with cac, flc, nag
      4. 1340440Domain d3f55d_: 3f55 D: [175476]
        automated match to d2cyga1
        complexed with cac, flc, nag
    3. Domains for 4hpg:
      1. 1340433Domain d4hpga_: 4hpg A: [229225]
        automated match to d3em5a_
        complexed with nag, peg
      2. 1340434Domain d4hpgb_: 4hpg B: [229227]
        automated match to d3em5a_
        complexed with nag, peg
      3. 1340435Domain d4hpgc_: 4hpg C: [229228]
        automated match to d3em5a_
        complexed with nag, peg
      4. 1340436Domain d4hpgd_: 4hpg D: [229224]
        automated match to d3em5a_
        complexed with nag, peg
    4. Domains for 4iis:
      1. 1340441Domain d4iisa_: 4iis A: [229244]
        automated match to d3em5a_
        complexed with cac, flc, na
      2. 1340442Domain d4iisb_: 4iis B: [229245]
        automated match to d3em5a_
        complexed with cac, flc, na
      3. 1340443Domain d4iisc_: 4iis C: [229246]
        automated match to d3em5a_
        complexed with cac, flc, na
      4. 1340444Domain d4iisd_: 4iis D: [229243]
        automated match to d3em5a_
        complexed with cac, flc, na
  11. 1340445Soil metagenome [TaxId:410658] [236610] (1 PDB entry)
  12. 1340448Streptomyces olivaceoviridis [TaxId:1921] [225150] (8 PDB entries)
    1. Domains for 2d1z:
      1. 1340449Domain d2d1za1: 2d1z A:1-301 [203861]
        Other proteins in same PDB: d2d1za2, d2d1zb2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
      2. 1340450Domain d2d1zb1: 2d1z B:501-801 [203863]
        Other proteins in same PDB: d2d1za2, d2d1zb2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
    2. Domains for 2d20:
      1. 1340455Domain d2d20a1: 2d20 A:1-301 [203865]
        Other proteins in same PDB: d2d20a2, d2d20b2
        automated match to d1xyfa2
        complexed with gol, npo; mutant
      2. 1340456Domain d2d20b1: 2d20 B:501-801 [203867]
        Other proteins in same PDB: d2d20a2, d2d20b2
        automated match to d1xyfa2
        complexed with gol, npo; mutant
    3. Domains for 2d22:
      1. 1340451Domain d2d22a1: 2d22 A:1-301 [203869]
        Other proteins in same PDB: d2d22a2, d2d22b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
      2. 1340452Domain d2d22b1: 2d22 B:501-801 [203871]
        Other proteins in same PDB: d2d22a2, d2d22b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
    4. Domains for 2d23:
      1. 1340457Domain d2d23a1: 2d23 A:1-301 [203873]
        Other proteins in same PDB: d2d23a2, d2d23b2
        automated match to d1xyfa2
        complexed with gol; mutant
      2. 1340458Domain d2d23b1: 2d23 B:501-801 [203875]
        Other proteins in same PDB: d2d23a2, d2d23b2
        automated match to d1xyfa2
        complexed with gol; mutant
    5. Domains for 2d24:
      1. 1340453Domain d2d24a1: 2d24 A:1-301 [203877]
        Other proteins in same PDB: d2d24a2, d2d24b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
      2. 1340454Domain d2d24b1: 2d24 B:501-801 [203879]
        Other proteins in same PDB: d2d24a2, d2d24b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
    6. Domain for 2g3i:
    7. Domain for 2g3j:
    8. Domains for 2g4f:
      1. 1340461Domain d2g4fa_: 2g4f A: [204297]
        automated match to d1e0xa_
        mutant
      2. 1340462Domain d2g4fb_: 2g4f B: [204298]
        automated match to d1e0xa_
        mutant
  13. 1340463Thermoascus aurantiacus [TaxId:5087] [190006] (3 PDB entries)
    1. Domains for 3nyd:
      1. 1340466Domain d3nyda_: 3nyd A: [182626]
        automated match to d1goka_
        complexed with 3ny, act, so4
      2. 1340467Domain d3nydb_: 3nyd B: [182627]
        automated match to d1goka_
        complexed with 3ny, act, so4
    2. Domain for 3o2l:
    3. Domains for 4bs0:
      1. 1340464Domain d4bs0a_: 4bs0 A: [228291]
        automated match to d1goka_
        complexed with 6nt, so4
      2. 1340465Domain d4bs0b_: 4bs0 B: [234278]
        automated match to d4bs0a_
        complexed with 6nt, so4
  14. 1340469Thermotoga petrophila [TaxId:390874] [189941] (2 PDB entries)
    1. Domains for 3niy:
      1. 1340470Domain d3niya_: 3niy A: [182330]
        automated match to d1vbra1
        complexed with act, so4
      2. 1340471Domain d3niyb_: 3niy B: [182331]
        automated match to d1vbra1
        complexed with act, so4
    2. Domains for 3nj3:
      1. 1340472Domain d3nj3a_: 3nj3 A: [182333]
        automated match to d1vbra1
        complexed with act, so4, xyp
      2. 1340473Domain d3nj3b_: 3nj3 B: [182334]
        automated match to d1vbra1
        complexed with act, so4, xyp
  15. 1340474Yeast (Candida albicans) [TaxId:5476] [188406] (5 PDB entries)
    1. Domain for 2pbo:
    2. Domain for 2pc8:
    3. Domain for 2pf0:
    4. Domain for 3n9k:
    5. Domain for 3o6a:

More info for Protein automated matches from c.1.8.3: beta-glycanases

Timeline for Protein automated matches from c.1.8.3: beta-glycanases: