Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 968086Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 969862Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 970330Family c.1.8.3: beta-glycanases [51487] (27 proteins)
    consist of a number of sequence families
  6. 970857Protein automated matches [190057] (11 species)
    not a true protein

Species:

  1. 970858Bacillus agaradhaerens [TaxId:76935] [187246] (1 PDB entry)
  2. 970860Bacillus halodurans [TaxId:86665] [188453] (1 PDB entry)
  3. 970862Bacillus licheniformis [TaxId:1402] [187025] (3 PDB entries)
    1. Domain for 2ccr:
    2. Domains for 2gft:
      1. 970863Domain d2gfta_: 2gft A: [164682]
        automated match to d1ur0b_
        complexed with ca; mutant
      2. 970864Domain d2gftb_: 2gft B: [164683]
        automated match to d1ur0b_
        complexed with ca; mutant
    3. Domains for 2j74:
      1. 970866Domain d2j74a_: 2j74 A: [147901]
        automated match to d1ur0b_
        complexed with b2g, b4g, ca
      2. 970867Domain d2j74b_: 2j74 B: [147902]
        automated match to d1ur0b_
        complexed with b2g, b4g, ca
  4. 970868Bacillus sp. [TaxId:65673] [187690] (2 PDB entries)
    1. Domains for 2f8q:
      1. 970869Domain d2f8qa_: 2f8q A: [164282]
        automated match to d1hiza_
        complexed with mg
      2. 970870Domain d2f8qb_: 2f8q B: [164283]
        automated match to d1hiza_
        complexed with mg
    2. Domains for 2fgl:
      1. 970871Domain d2fgla_: 2fgl A: [164353]
        automated match to d1hiza_
        complexed with lxc, mg
      2. 970872Domain d2fglb_: 2fgl B: [164354]
        automated match to d1hiza_
        complexed with lxc, mg
  5. 970873Bacillus sp. [TaxId:89769] [189058] (3 PDB entries)
    1. Domain for 3emc:
    2. Domain for 3emq:
    3. Domain for 3emz:
  6. 970877Clostridium thermocellum [TaxId:1515] [187247] (4 PDB entries)
    1. Domain for 2bvd:
    2. Domain for 2cip:
    3. Domain for 2v3g:
    4. Domain for 2vi0:
  7. 970882Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId:155077] [188920] (1 PDB entry)
  8. 970884Rubber tree (Hevea brasiliensis) [TaxId:3981] [189057] (2 PDB entries)
    1. Domains for 3em5:
      1. 970885Domain d3em5a_: 3em5 A: [175079]
        automated match to d2cyga1
        complexed with nag, peg
      2. 970886Domain d3em5b_: 3em5 B: [175080]
        automated match to d2cyga1
        complexed with nag, peg
      3. 970887Domain d3em5c_: 3em5 C: [175081]
        automated match to d2cyga1
        complexed with nag, peg
      4. 970888Domain d3em5d_: 3em5 D: [175082]
        automated match to d2cyga1
        complexed with nag, peg
    2. Domains for 3f55:
      1. 970889Domain d3f55a_: 3f55 A: [175473]
        automated match to d2cyga1
        complexed with cac, flc, nag
      2. 970890Domain d3f55b_: 3f55 B: [175474]
        automated match to d2cyga1
        complexed with cac, flc, nag
      3. 970891Domain d3f55c_: 3f55 C: [175475]
        automated match to d2cyga1
        complexed with cac, flc, nag
      4. 970892Domain d3f55d_: 3f55 D: [175476]
        automated match to d2cyga1
        complexed with cac, flc, nag
  9. 970893Thermoascus aurantiacus [TaxId:5087] [190006] (1 PDB entry)
  10. 970896Thermotoga petrophila [TaxId:390874] [189941] (2 PDB entries)
    1. Domains for 3niy:
      1. 970897Domain d3niya_: 3niy A: [182330]
        automated match to d1vbra1
        complexed with act, so4
      2. 970898Domain d3niyb_: 3niy B: [182331]
        automated match to d1vbra1
        complexed with act, so4
    2. Domains for 3nj3:
      1. 970899Domain d3nj3a_: 3nj3 A: [182333]
        automated match to d1vbra1
        complexed with act, so4, xyp
      2. 970900Domain d3nj3b_: 3nj3 B: [182334]
        automated match to d1vbra1
        complexed with act, so4, xyp
  11. 970901Yeast (Candida albicans) [TaxId:5476] [188406] (5 PDB entries)
    1. Domain for 2pbo:
    2. Domain for 2pc8:
    3. Domain for 2pf0:
    4. Domain for 3n9k:
    5. Domain for 3o6a:

More info for Protein automated matches from c.1.8.3: beta-glycanases

Timeline for Protein automated matches from c.1.8.3: beta-glycanases: