Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2414849Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families) (S)
  5. 2415386Family c.1.4.0: automated matches [191310] (1 protein)
    not a true family
  6. 2415387Protein automated matches [190048] (24 species)
    not a true protein

Species:

  1. 2415388Aerococcus viridans [TaxId:1377] [187639] (8 PDB entries)
    1. Domains for 2du2:
      1. 2415397Domain d2du2a_: 2du2 A: [163695]
        automated match to d1tb3a1
        complexed with fmn
      2. 2415398Domain d2du2b_: 2du2 B: [163696]
        automated match to d1tb3a1
        complexed with fmn
      3. 2415399Domain d2du2c_: 2du2 C: [163697]
        automated match to d1tb3a1
        complexed with fmn
      4. 2415400Domain d2du2d_: 2du2 D: [163698]
        automated match to d1tb3a1
        complexed with fmn
    2. Domains for 2e77:
      1. 2415393Domain d2e77a_: 2e77 A: [163884]
        automated match to d1tb3a1
        complexed with fmn, pyr
      2. 2415394Domain d2e77b_: 2e77 B: [163885]
        automated match to d1tb3a1
        complexed with fmn, pyr
      3. 2415395Domain d2e77c_: 2e77 C: [163886]
        automated match to d1tb3a1
        complexed with fmn, pyr
      4. 2415396Domain d2e77d_: 2e77 D: [163887]
        automated match to d1tb3a1
        complexed with fmn, pyr
    3. Domains for 2j6x:
      1. 2415405Domain d2j6xa_: 2j6x A: [165919]
        automated match to d1tb3a1
        complexed with fmn, zn
      2. 2415406Domain d2j6xb_: 2j6x B: [165920]
        automated match to d1tb3a1
        complexed with fmn, zn
      3. 2415407Domain d2j6xc_: 2j6x C: [165921]
        automated match to d1tb3a1
        complexed with fmn, zn
      4. 2415408Domain d2j6xd_: 2j6x D: [165922]
        automated match to d1tb3a1
        complexed with fmn, zn
      5. 2415409Domain d2j6xe_: 2j6x E: [165923]
        automated match to d1tb3a1
        complexed with fmn, zn
      6. 2415410Domain d2j6xf_: 2j6x F: [165924]
        automated match to d1tb3a1
        complexed with fmn, zn
      7. 2415411Domain d2j6xg_: 2j6x G: [165925]
        automated match to d1tb3a1
        complexed with fmn, zn
      8. 2415412Domain d2j6xh_: 2j6x H: [165926]
        automated match to d1tb3a1
        complexed with fmn, zn
    4. Domains for 2nli:
      1. 2415389Domain d2nlia_: 2nli A: [166290]
        automated match to d1tb3a1
        complexed with fmn, lac, peo
      2. 2415390Domain d2nlib_: 2nli B: [166291]
        automated match to d1tb3a1
        complexed with fmn, lac, peo
    5. Domains for 2zfa:
      1. 2415391Domain d2zfaa_: 2zfa A: [171191]
        automated match to d1tb3a1
        complexed with edo, fmn
      2. 2415392Domain d2zfab_: 2zfa B: [171192]
        automated match to d1tb3a1
        complexed with edo, fmn
    6. Domains for 4rje:
      1. 2415401Domain d4rjea_: 4rje A: [261406]
        automated match to d2du2a_
        complexed with edo, fnr, pyr; mutant
      2. 2415402Domain d4rjeb_: 4rje B: [261574]
        automated match to d2du2a_
        complexed with edo, fnr, pyr; mutant
      3. 2415403Domain d4rjec_: 4rje C: [261576]
        automated match to d2du2a_
        complexed with edo, fnr, pyr; mutant
      4. 2415404Domain d4rjed_: 4rje D: [261575]
        automated match to d2du2a_
        complexed with edo, fnr, pyr; mutant
    7. Domains for 4yl2:
      1. 2415413Domain d4yl2a_: 4yl2 A: [276392]
        automated match to d2du2a_
        complexed with fmn, pyr; mutant
      2. 2415414Domain d4yl2b_: 4yl2 B: [276393]
        automated match to d2du2a_
        complexed with fmn, pyr; mutant
      3. 2415415Domain d4yl2c_: 4yl2 C: [276394]
        automated match to d2du2a_
        complexed with fmn, pyr; mutant
      4. 2415416Domain d4yl2d_: 4yl2 D: [276395]
        automated match to d2du2a_
        complexed with fmn, pyr; mutant
    8. Domains for 5ebu:
      1. 2415417Domain d5ebua_: 5ebu A: [318938]
        automated match to d2du2a_
        complexed with fmn, pyr; mutant
      2. 2415418Domain d5ebub_: 5ebu B: [318953]
        automated match to d2du2a_
        complexed with fmn, pyr; mutant
      3. 2415419Domain d5ebuc_: 5ebu C: [319000]
        automated match to d2du2a_
        complexed with fmn, pyr; mutant
      4. 2415420Domain d5ebud_: 5ebu D: [318991]
        automated match to d2du2a_
        complexed with fmn, pyr; mutant
      5. 2415421Domain d5ebue_: 5ebu E: [318970]
        automated match to d2du2a_
        complexed with fmn, pyr; mutant
      6. 2415422Domain d5ebuf_: 5ebu F: [318950]
        automated match to d2du2a_
        complexed with fmn, pyr; mutant
      7. 2415423Domain d5ebug_: 5ebu G: [318971]
        automated match to d2du2a_
        complexed with fmn, pyr; mutant
      8. 2415424Domain d5ebuh_: 5ebu H: [318952]
        automated match to d2du2a_
        complexed with fmn, pyr; mutant
  2. 2415425Agrobacterium tumefaciens [TaxId:358] [197106] (5 PDB entries)
    1. Domains for 4jic:
      1. 2415426Domain d4jica_: 4jic A: [223836]
        automated match to d4jiqa_
        complexed with fmn, peg, so4
      2. 2415427Domain d4jicb_: 4jic B: [223837]
        automated match to d4jiqa_
        complexed with fmn, peg, so4
      3. 2415428Domain d4jicc_: 4jic C: [223838]
        automated match to d4jiqa_
        complexed with fmn, peg, so4
    2. Domain for 4jip:
    3. Domain for 4jiq:
    4. Domain for 5epd:
    5. Domain for 5n6g:
  3. 2415433Artemisia annua [TaxId:35608] [323541] (4 PDB entries)
    1. Domain for 5dxx:
    2. Domain for 5dxy:
    3. Domain for 5dy2:
    4. Domain for 5dy3:
  4. 2415438Aspergillus fumigatus [TaxId:330879] [260575] (1 PDB entry)
  5. 2415440Burkholderia pseudomallei [TaxId:28450] [188818] (1 PDB entry)
  6. 2415443Cupriavidus metallidurans [TaxId:119219] [338590] (1 PDB entry)
  7. 2415448Geobacillus kaustophilus [TaxId:1462] [259353] (2 PDB entries)
    1. Domains for 3gr7:
      1. 2415449Domain d3gr7a_: 3gr7 A: [259355]
        automated match to d3krua_
        complexed with fmn, so4
      2. 2415450Domain d3gr7b_: 3gr7 B: [262280]
        automated match to d3gr7a_
        complexed with fmn, so4
    2. Domains for 3gr8:
      1. 2415451Domain d3gr8a_: 3gr8 A: [262281]
        automated match to d3gr7a_
        complexed with btb, fmn, so4
      2. 2415452Domain d3gr8b_: 3gr8 B: [259356]
        automated match to d3krua_
        complexed with btb, fmn, so4
  8. 2415453Helicobacter pylori [TaxId:563041] [341774] (1 PDB entry)
  9. 2415456Human (Homo sapiens) [TaxId:9606] [189110] (14 PDB entries)
    1. Domain for 2nzl:
    2. Domain for 2rdt:
    3. Domain for 2rdu:
    4. Domain for 2rdw:
    5. Domains for 2w0u:
      1. 2415461Domain d2w0ua_: 2w0u A: [168987]
        automated match to d1al7a_
        complexed with c7c, fmn
      2. 2415462Domain d2w0ub_: 2w0u B: [168988]
        automated match to d1al7a_
        complexed with c7c, fmn
      3. 2415463Domain d2w0uc_: 2w0u C: [168989]
        automated match to d1al7a_
        complexed with c7c, fmn
      4. 2415464Domain d2w0ud_: 2w0u D: [168990]
        automated match to d1al7a_
        complexed with c7c, fmn
    6. Domain for 5qib:
    7. Domain for 5qic:
    8. Domain for 5qid:
    9. Domain for 5qie:
    10. Domain for 5qif:
    11. Domain for 5qig:
    12. Domain for 5qih:
    13. Domain for 6gmb:
    14. Domain for 6gmc:
  10. 2415465Norway rat (Rattus norvegicus) [TaxId:10116] [186769] (1 PDB entry)
  11. 2415473Pseudomonas putida [TaxId:160488] [194066] (2 PDB entries)
    1. Domains for 4ab4:
      1. 2415474Domain d4ab4a1: 4ab4 A:2-349 [218764]
        Other proteins in same PDB: d4ab4a2, d4ab4b2
        automated match to d4aeob_
        complexed with edo, fmn, gol, so4, tnl
      2. 2415475Domain d4ab4b1: 4ab4 B:2-349 [218765]
        Other proteins in same PDB: d4ab4a2, d4ab4b2
        automated match to d4aeob_
        complexed with edo, fmn, gol, so4, tnl
    2. Domains for 4aeo:
      1. 2415476Domain d4aeoa1: 4aeo A:2-349 [201422]
        Other proteins in same PDB: d4aeoa2, d4aeob2
        automated match to d4aeob_
        complexed with fmn, gol, so4, tnl
      2. 2415477Domain d4aeob1: 4aeo B:2-349 [194067]
        Other proteins in same PDB: d4aeoa2, d4aeob2
        automated match to d3gkaa_
        complexed with fmn, gol, so4, tnl
  12. 2415478Pseudomonas putida [TaxId:303] [187793] (24 PDB entries)
    1. Domain for 2h8x:
    2. Domain for 2h8z:
    3. Domain for 2h90:
    4. Domain for 3l5l:
    5. Domain for 3l5m:
    6. Domain for 3l65:
    7. Domain for 3l66:
    8. Domain for 3l67:
    9. Domain for 3l68:
    10. Domain for 3n14:
    11. Domains for 3n19:
      1. 2415500Domain d3n19b_: 3n19 B: [181772]
        automated match to d1z41a1
        complexed with fnr, so4
      2. 2415501Domain d3n19d_: 3n19 D: [181773]
        automated match to d1z41a1
        complexed with fnr, so4
    12. Domain for 4uth:
    13. Domain for 4uti:
    14. Domain for 4utj:
    15. Domain for 4utk:
    16. Domain for 4utl:
    17. Domain for 4utm:
    18. Domains for 5cpl:
      1. 2415497Domain d5cpla_: 5cpl A: [312867]
        automated match to d3l65a_
        complexed with 536, ca, fnr
      2. 2415498Domain d5cplb_: 5cpl B: [312869]
        automated match to d3l65a_
        complexed with 536, ca, fnr
    19. Domains for 5cpm:
      1. 2415493Domain d5cpma_: 5cpm A: [312868]
        automated match to d3l65a_
        complexed with fnr, ndp
      2. 2415494Domain d5cpmb_: 5cpm B: [312871]
        automated match to d3l65a_
        complexed with fnr, ndp
    20. Domains for 5cpn:
      1. 2415505Domain d5cpna_: 5cpn A: [312954]
        automated match to d3l65a_
        complexed with 531, fnr
      2. 2415506Domain d5cpnb_: 5cpn B: [312876]
        automated match to d3l65a_
        complexed with 531, fnr
    21. Domains for 5cpo:
      1. 2415502Domain d5cpoa_: 5cpo A: [312923]
        automated match to d3l65a_
        complexed with ca, fnr, xen
      2. 2415503Domain d5cpob_: 5cpo B: [312983]
        automated match to d3l65a_
        complexed with ca, fnr, xen
    22. Domain for 5lni:
    23. Domain for 5lnj:
    24. Domains for 5n6q:
      1. 2415507Domain d5n6qa_: 5n6q A: [334285]
        automated match to d3l65a_
        complexed with 8oz, cl, fmn, gol
      2. 2415508Domain d5n6qb_: 5n6q B: [334271]
        automated match to d3l65a_
        complexed with 8oz, cl, fmn, gol
  13. 2415509Scheffersomyces stipitis [TaxId:322104] [346272] (5 PDB entries)
    1. Domain for 3tjl:
    2. Domain for 3upw:
    3. Domain for 4df2:
    4. Domain for 4m5p:
    5. Domains for 4qai:
      1. 2415514Domain d4qaia_: 4qai A: [345422]
        automated match to d4tmca_
        complexed with fmn
      2. 2415515Domain d4qaib_: 4qai B: [345423]
        automated match to d4tmca_
        complexed with fmn
      3. 2415516Domain d4qaic_: 4qai C: [345424]
        automated match to d4tmca_
        complexed with fmn
      4. 2415517Domain d4qaid_: 4qai D: [345425]
        automated match to d4tmca_
        complexed with fmn
      5. 2415518Domain d4qaie_: 4qai E: [345426]
        automated match to d4tmca_
        complexed with fmn
      6. 2415519Domain d4qaif_: 4qai F: [345427]
        automated match to d4tmca_
        complexed with fmn
  14. 2415520Shewanella oneidensis [TaxId:211586] [187764] (13 PDB entries)
    1. Domain for 2gq8:
    2. Domain for 2gq9:
    3. Domain for 2gqa:
    4. Domain for 4aws:
    5. Domain for 4awt:
    6. Domain for 4awu:
    7. Domain for 4b5n:
    8. Domain for 5k0r:
    9. Domain for 5k1k:
    10. Domain for 5k1m:
    11. Domain for 5k1q:
    12. Domain for 5k1u:
    13. Domain for 5k1w:
  15. 2415534Shewanella oneidensis [TaxId:70863] [187761] (1 PDB entry)
  16. 2415536Streptococcus mutans [TaxId:1309] [255997] (2 PDB entries)
    1. Domains for 3oix:
      1. 2415541Domain d3oixa_: 3oix A: [248274]
        automated match to d2b4gb_
        complexed with fmn, gol
      2. 2415542Domain d3oixb_: 3oix B: [248275]
        automated match to d2b4gb_
        complexed with fmn, gol
      3. 2415543Domain d3oixc_: 3oix C: [248276]
        automated match to d2b4gb_
        complexed with fmn, gol
      4. 2415544Domain d3oixd_: 3oix D: [248277]
        automated match to d2b4gb_
        complexed with fmn, gol
    2. Domains for 3sr7:
      1. 2415537Domain d3sr7a_: 3sr7 A: [249570]
        automated match to d1vcfa1
        complexed with po4
      2. 2415538Domain d3sr7b_: 3sr7 B: [249571]
        automated match to d1vcfa1
        complexed with po4
      3. 2415539Domain d3sr7c_: 3sr7 C: [249572]
        automated match to d1vcfa1
        complexed with po4
      4. 2415540Domain d3sr7d_: 3sr7 D: [249573]
        automated match to d1vcfa1
        complexed with po4
  17. 2415545Thermoanaerobacter pseudethanolicus [TaxId:340099] [189163] (2 PDB entries)
    1. Domains for 3kru:
      1. 2415546Domain d3krua_: 3kru A: [179624]
        automated match to d1z41a1
        complexed with act, fmn
      2. 2415547Domain d3krub_: 3kru B: [179625]
        automated match to d1z41a1
        complexed with act, fmn
      3. 2415548Domain d3kruc_: 3kru C: [179626]
        automated match to d1z41a1
        complexed with act, fmn
      4. 2415549Domain d3krud_: 3kru D: [179627]
        automated match to d1z41a1
        complexed with act, fmn
    2. Domains for 3krz:
      1. 2415550Domain d3krza_: 3krz A: [179635]
        automated match to d1z41a1
        complexed with fmn, txd
      2. 2415551Domain d3krzb_: 3krz B: [179636]
        automated match to d1z41a1
        complexed with fmn, txd
      3. 2415552Domain d3krzc_: 3krz C: [179637]
        automated match to d1z41a1
        complexed with fmn, txd
      4. 2415553Domain d3krzd_: 3krz D: [179638]
        automated match to d1z41a1
        complexed with fmn, txd
  18. 2415554Thermus scotoductus [TaxId:37636] [189238] (3 PDB entries)
    1. Domains for 3hf3:
      1. 2415559Domain d3hf3a_: 3hf3 A: [177456]
        automated match to d1z41a1
        complexed with fmn, so4
      2. 2415560Domain d3hf3b_: 3hf3 B: [177457]
        automated match to d1z41a1
        complexed with fmn, so4
      3. 2415561Domain d3hf3c_: 3hf3 C: [177458]
        automated match to d1z41a1
        complexed with fmn, so4
      4. 2415562Domain d3hf3d_: 3hf3 D: [177459]
        automated match to d1z41a1
        complexed with fmn, so4
    2. Domains for 3hgj:
      1. 2415555Domain d3hgja_: 3hgj A: [177543]
        automated match to d1z41a1
        complexed with fmn, hba
      2. 2415556Domain d3hgjb_: 3hgj B: [177544]
        automated match to d1z41a1
        complexed with fmn, hba
      3. 2415557Domain d3hgjc_: 3hgj C: [177545]
        automated match to d1z41a1
        complexed with fmn, hba
      4. 2415558Domain d3hgjd_: 3hgj D: [177546]
        automated match to d1z41a1
        complexed with fmn, hba
    3. Domains for 5nux:
      1. 3052811Domain d5nuxa_: 5nux A: [352873]
        automated match to d3hgja_
        complexed with fmn; mutant
      2. 3052820Domain d5nuxd_: 5nux D: [352882]
        automated match to d3hgja_
        complexed with fmn; mutant
      3. 3052836Domain d5nuxc_: 5nux C: [352898]
        automated match to d3hgja_
        complexed with fmn; mutant
      4. 3052857Domain d5nuxb_: 5nux B: [352919]
        automated match to d3hgja_
        complexed with fmn; mutant
  19. 2415563Trypanosoma cruzi [TaxId:5693] [189890] (4 PDB entries)
    1. Domains for 3aty:
      1. 2415565Domain d3atya_: 3aty A: [172335]
        automated match to d1icpa_
        complexed with fmn
      2. 2415566Domain d3atyb_: 3aty B: [172336]
        automated match to d1icpa_
        complexed with fmn
    2. Domains for 3atz:
      1. 2415567Domain d3atza_: 3atz A: [172337]
        automated match to d1icpa_
        complexed with fmn, hba
      2. 2415568Domain d3atzb_: 3atz B: [172338]
        automated match to d1icpa_
        complexed with fmn, hba
      3. 2415569Domain d3atzc_: 3atz C: [172339]
        automated match to d1icpa_
        complexed with fmn, hba
      4. 2415570Domain d3atzd_: 3atz D: [172340]
        automated match to d1icpa_
        complexed with fmn, hba
    3. Domain for 4e2b:
    4. Domains for 4e2d:
      1. 2415571Domain d4e2da_: 4e2d A: [196701]
        automated match to d3atya_
        complexed with dms, fmn
      2. 2415572Domain d4e2db_: 4e2d B: [201779]
        automated match to d4e2da_
        complexed with dms, fmn
      3. 2415573Domain d4e2dc_: 4e2d C: [196702]
        automated match to d3atya_
        complexed with dms, fmn
      4. 2415574Domain d4e2dd_: 4e2d D: [201780]
        automated match to d4e2da_
        complexed with dms, fmn
  20. 2415575Trypanosome (Trypanosoma brucei) [TaxId:5691] [186962] (1 PDB entry)
  21. 2415579Zymomonas mobilis [TaxId:264203] [311410] (1 PDB entry)
  22. 2415581Zymomonas mobilis [TaxId:542] [194530] (1 PDB entry)
  23. 3051458Trypanosoma brucei [TaxId:185431] [351520] (2 PDB entries)
    1. Domains for 5xfv:
      1. 3051481Domain d5xfvc_: 5xfv C: [351543]
        automated match to d2b4gb_
        complexed with fmn, mli
      2. 3051520Domain d5xfva_: 5xfv A: [351582]
        automated match to d2b4gb_
        complexed with fmn, mli
      3. 3051525Domain d5xfvb_: 5xfv B: [351587]
        automated match to d2b4gb_
        complexed with fmn, mli
      4. 3051534Domain d5xfvd_: 5xfv D: [351596]
        automated match to d2b4gb_
        complexed with fmn, mli
    2. Domains for 5xfw:
      1. 3051459Domain d5xfwd1: 5xfw D:1-313 [351521]
        Other proteins in same PDB: d5xfwd2
        automated match to d2b4gb_
        complexed with mli
      2. 3051488Domain d5xfwb_: 5xfw B: [351550]
        Other proteins in same PDB: d5xfwd2
        automated match to d2b4gb_
        complexed with mli
      3. 3051530Domain d5xfwc_: 5xfw C: [351592]
        Other proteins in same PDB: d5xfwd2
        automated match to d2b4gb_
        complexed with mli
      4. 3051535Domain d5xfwa_: 5xfw A: [351597]
        Other proteins in same PDB: d5xfwd2
        automated match to d2b4gb_
        complexed with mli
  24. 3055474Thermus scotoductus [TaxId:743525] [355536] (1 PDB entry)

More info for Protein automated matches from c.1.4.0: automated matches

Timeline for Protein automated matches from c.1.4.0: automated matches: