Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2055629Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2055630Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2055877Family b.47.1.2: Eukaryotic proteases [50514] (49 protein domains)
  6. 2057491Protein automated matches [190044] (14 species)
    not a true protein

Species:

  1. 2057492Agkistrodon contortrix [TaxId:8713] [187405] (2 PDB entries)
    1. Domain for 2aip:
    2. Domain for 2aiq:
  2. 2057495Atlantic cod (Gadus morhua) [TaxId:8049] [188345] (1 PDB entry)
  3. 2057497Chum salmon (Oncorhynchus keta) [TaxId:8018] [189036] (3 PDB entries)
    1. Domains for 2zpq:
      1. 2057501Domain d2zpqa_: 2zpq A: [171406]
        automated match to d1bita_
        complexed with ben, ca, so4
      2. 2057502Domain d2zpqb_: 2zpq B: [191691]
        automated match to d1hj8a_
        complexed with ben, ca, so4
    2. Domains for 2zpr:
      1. 2057499Domain d2zpra_: 2zpr A: [171407]
        automated match to d1hj8a_
        complexed with ben, ca
      2. 2057500Domain d2zprb_: 2zpr B: [171408]
        automated match to d1hj8a_
        complexed with ben, ca
    3. Domain for 2zps:
  4. 2057503Cow (Bos taurus) [TaxId:9913] [187001] (14 PDB entries)
    1. Domain for 2by5:
    2. Domain for 2by6:
    3. Domain for 2by7:
    4. Domain for 2by8:
    5. Domain for 2by9:
    6. Domain for 2bya:
    7. Domain for 3qk1:
    8. Domain for 3veq:
    9. Domain for 4niv:
    10. Domain for 4niw:
    11. Domain for 4nix:
    12. Domains for 4niy:
      1. 2057515Domain d4niya_: 4niy A: [237850]
        Other proteins in same PDB: d4niye_, d4niyf_, d4niyg_, d4niyh_
        automated match to d4niwa_
        complexed with ca, zn
      2. 2057516Domain d4niyb_: 4niy B: [237852]
        Other proteins in same PDB: d4niye_, d4niyf_, d4niyg_, d4niyh_
        automated match to d4niwa_
        complexed with ca, zn
      3. 2057517Domain d4niyc_: 4niy C: [237853]
        Other proteins in same PDB: d4niye_, d4niyf_, d4niyg_, d4niyh_
        automated match to d4niwa_
        complexed with ca, zn
      4. 2057518Domain d4niyd_: 4niy D: [237851]
        Other proteins in same PDB: d4niye_, d4niyf_, d4niyg_, d4niyh_
        automated match to d4niwa_
        complexed with ca, zn
    13. Domain for 5fxl:
    14. Domain for 5jyi:
  5. 2057519Daboia russellii [TaxId:343250] [196182] (3 PDB entries)
    1. Domain for 3s9a:
    2. Domain for 3s9b:
    3. Domain for 3sbk:
  6. 2057523Gloydius saxatilis [TaxId:92067] [195310] (1 PDB entry)
  7. 2057525Golden hamster (Mesocricetus auratus) [TaxId:10036] [188254] (1 PDB entry)
  8. 2057528Halys viper (Agkistrodon halys) [TaxId:8714] [195671] (1 PDB entry)
  9. 2057530Human (Homo sapiens) [TaxId:9606] [187233] (146 PDB entries)
    1. Domain for 1spj:
    2. Domain for 1w0y:
    3. Domain for 1w2k:
    4. Domain for 1w7x:
    5. Domain for 1w8b:
    6. Domain for 1wqv:
    7. Domain for 1wss:
    8. Domain for 1wtg:
    9. Domain for 1wu1:
    10. Domain for 1wun:
    11. Domain for 1wv7:
    12. Domain for 1z6e:
    13. Domain for 1z71:
    14. Domain for 1zgi:
    15. Domain for 1zgv:
    16. Domain for 1zrb:
    17. Domain for 2aer:
    18. Domain for 2anw:
    19. Domain for 2any:
    20. Domain for 2bdy:
    21. Domain for 2bmg:
    22. Domain for 2boh:
    23. Domain for 2bok:
    24. Domain for 2bq6:
    25. Domain for 2bq7:
    26. Domain for 2bqw:
    27. Domain for 2bz6:
    28. Domain for 2cji:
    29. Domain for 2d1j:
    30. Domain for 2ec9:
    31. Domain for 2ei6:
    32. Domain for 2ei7:
    33. Domain for 2ei8:
    34. Domains for 2f9o:
      1. 2057625Domain d2f9oa_: 2f9o A: [164297]
        automated match to d1ltoa_
        mutant
      2. 2057626Domain d2f9ob_: 2f9o B: [164298]
        automated match to d1ltoa_
        mutant
      3. 2057627Domain d2f9oc_: 2f9o C: [164299]
        automated match to d1ltoa_
        mutant
      4. 2057628Domain d2f9od_: 2f9o D: [164300]
        automated match to d1ltoa_
        mutant
    35. Domains for 2f9p:
      1. 2057647Domain d2f9pa_: 2f9p A: [164301]
        automated match to d1ltoa_
        complexed with bu3, nag; mutant
      2. 2057648Domain d2f9pb_: 2f9p B: [164302]
        automated match to d1ltoa_
        complexed with bu3, nag; mutant
      3. 2057649Domain d2f9pc_: 2f9p C: [164303]
        automated match to d1ltoa_
        complexed with bu3, nag; mutant
      4. 2057650Domain d2f9pd_: 2f9p D: [164304]
        automated match to d1ltoa_
        complexed with bu3, nag; mutant
    36. Domain for 2fzz:
    37. Domain for 2g00:
    38. Domain for 2h9e:
    39. Domain for 2j2u:
    40. Domain for 2j34:
    41. Domain for 2j38:
    42. Domain for 2j4i:
    43. Domain for 2j94:
    44. Domain for 2j95:
    45. Domain for 2jkh:
    46. Domain for 2o8t:
    47. Domain for 2o8u:
    48. Domain for 2o8w:
    49. Domain for 2p16:
    50. Domain for 2p3f:
    51. Domain for 2p3t:
    52. Domain for 2p3u:
    53. Domain for 2p93:
    54. Domain for 2p94:
    55. Domain for 2p95:
    56. Domain for 2q1j:
    57. Domain for 2rg3:
    58. Domain for 2uwl:
    59. Domain for 2uwo:
    60. Domain for 2uwp:
    61. Domain for 2vh0:
    62. Domain for 2vh6:
    63. Domain for 2vin:
    64. Domain for 2vio:
    65. Domain for 2vip:
    66. Domain for 2viq:
    67. Domain for 2viv:
    68. Domain for 2viw:
    69. Domains for 2vvc:
      1. 2057603Domain d2vvca_: 2vvc A: [168851]
        Other proteins in same PDB: d2vvck_, d2vvcl_
        automated match to d1c5md_
        complexed with ca, lzf, na
      2. 2057604Domain d2vvcb_: 2vvc B: [168852]
        Other proteins in same PDB: d2vvck_, d2vvcl_
        automated match to d1c5md_
        complexed with ca, lzf, na
    70. Domain for 2vvu:
    71. Domain for 2vvv:
    72. Domain for 2vwl:
    73. Domains for 2vwm:
      1. 2057607Domain d2vwma_: 2vwm A: [168877]
        Other proteins in same PDB: d2vwmk_, d2vwml_
        automated match to d1c5md_
        complexed with lzi, na
      2. 2057608Domain d2vwmb_: 2vwm B: [168878]
        Other proteins in same PDB: d2vwmk_, d2vwml_
        automated match to d1c5md_
        complexed with lzi, na
    74. Domain for 2vwn:
    75. Domain for 2vwo:
    76. Domain for 2w26:
    77. Domain for 2w3i:
    78. Domain for 2w3k:
    79. Domain for 2wph:
    80. Domain for 2wpj:
    81. Domain for 2wpk:
    82. Domain for 2wpl:
    83. Domain for 2wpm:
    84. Domain for 2wyg:
    85. Domain for 2wyj:
    86. Domain for 2xbv:
    87. Domain for 2xbw:
    88. Domain for 2xbx:
    89. Domain for 2xby:
    90. Domain for 2xc0:
    91. Domain for 2xc4:
    92. Domain for 2xc5:
    93. Domain for 2y5f:
    94. Domain for 2y5g:
    95. Domain for 2y5h:
    96. Domain for 2y7x:
    97. Domain for 2y7z:
    98. Domain for 2y80:
    99. Domain for 2y81:
    100. Domain for 2y82:
    101. Domain for 2z7f:
    102. Domain for 2zch:
    103. Domain for 3c1k:
    104. Domain for 3cen:
    105. Domain for 3cs7:
    106. Domains for 3ens:
      1. 2057657Domain d3ensb_: 3ens B: [199346]
        Other proteins in same PDB: d3ensa1, d3ensa2, d3ensc1, d3ensc2
        automated match to d3ensd_
        complexed with act, ca, ens, gol, mes, na
      2. 2057658Domain d3ensd_: 3ens D: [175107]
        Other proteins in same PDB: d3ensa1, d3ensa2, d3ensc1, d3ensc2
        automated match to d1c5md_
        complexed with act, ca, ens, gol, mes, na
    107. Domain for 3ffg:
    108. Domain for 3hpt:
    109. Domain for 3iit:
    110. Domain for 3k9x:
    111. Domain for 3kqb:
    112. Domain for 3kqc:
    113. Domain for 3kqd:
    114. Domain for 3kqe:
    115. Domain for 3m36:
    116. Domain for 3m37:
    117. Domain for 3pb1:
    118. Domain for 3q3k:
    119. Domains for 3q76:
      1. 2057575Domain d3q76a_: 3q76 A: [184239]
        automated match to d1h1ba_
        complexed with nag, so4
      2. 2057576Domain d3q76b_: 3q76 B: [184240]
        automated match to d1h1ba_
        complexed with nag, so4
    120. Domain for 3q77:
    121. Domain for 3sqh:
    122. Domain for 3tju:
    123. Domain for 3tjv:
    124. Domain for 3tk5:
    125. Domain for 3tk6:
    126. Domain for 3tk9:
    127. Domain for 3vfe:
    128. Domain for 4a7i:
    129. Domain for 4d8n:
    130. Domains for 4dgj:
      1. 2057563Domain d4dgja_: 4dgj A: [195586]
        automated match to d1ekbb_
      2. 2057564Domain d4dgjb_: 4dgj B: [195585]
        automated match to d1ekbb_
      3. 2057565Domain d4dgjc_: 4dgj C: [195584]
        automated match to d1ekbb_
      4. 2057566Domain d4dgjd_: 4dgj D: [201697]
        automated match to d4dgjc_
    131. Domains for 4gaw:
      1. 2057679Domain d4gawa_: 4gaw A: [252173]
        automated match to d3tk9a_
        complexed with cl, so4
      2. 2057680Domain d4gawb_: 4gaw B: [252174]
        automated match to d3tk9a_
        complexed with cl, so4
      3. 2057681Domain d4gawc_: 4gaw C: [252175]
        automated match to d3tk9a_
        complexed with cl, so4
      4. 2057682Domain d4gawd_: 4gaw D: [252176]
        automated match to d3tk9a_
        complexed with cl, so4
      5. 2057683Domain d4gawe_: 4gaw E: [252177]
        automated match to d3tk9a_
        complexed with cl, so4
      6. 2057684Domain d4gawf_: 4gaw F: [252178]
        automated match to d3tk9a_
        complexed with cl, so4
      7. 2057685Domain d4gawg_: 4gaw G: [252179]
        automated match to d3tk9a_
        complexed with cl, so4
      8. 2057686Domain d4gawh_: 4gaw H: [252180]
        automated match to d3tk9a_
        complexed with cl, so4
      9. 2057687Domain d4gawi_: 4gaw I: [252181]
        automated match to d3tk9a_
        complexed with cl, so4
      10. 2057688Domain d4gawj_: 4gaw J: [252182]
        automated match to d3tk9a_
        complexed with cl, so4
      11. 2057689Domain d4gawk_: 4gaw K: [252183]
        automated match to d3tk9a_
        complexed with cl, so4
      12. 2057690Domain d4gawl_: 4gaw L: [252184]
        automated match to d3tk9a_
        complexed with cl, so4
    132. Domain for 4nfe:
    133. Domain for 4nff:
    134. Domain for 4ogx:
    135. Domains for 4ogy:
      1. 2057638Domain d4ogya_: 4ogy A: [259412]
        Other proteins in same PDB: d4ogyl1, d4ogyl2, d4ogyn1, d4ogyn2
        automated match to d2anya_
        complexed with edo
      2. 2057639Domain d4ogyb_: 4ogy B: [263287]
        Other proteins in same PDB: d4ogyl1, d4ogyl2, d4ogyn1, d4ogyn2
        automated match to d4ogya_
        complexed with edo
    136. Domain for 4xsk:
    137. Domain for 5fbe:
    138. Domain for 5fbi:
    139. Domain for 5fck:
    140. Domain for 5gvt:
    141. Domain for 5mt0:
    142. Domain for 5mt4:
    143. Domain for 5nb7:
    144. Domain for 5nba:
    145. Domain for 5tjx:
    146. Domain for 5tz9:
  10. 2057691Jararacussu (Bothrops jararacussu) [TaxId:8726] [194232] (1 PDB entry)
  11. 2057693Macaca mulatta [TaxId:9541] [196009] (1 PDB entry)
  12. 2057696Mouse (Mus musculus) [TaxId:10090] [188816] (4 PDB entries)
    1. Domains for 3fzz:
      1. 2057699Domain d3fzza_: 3fzz A: [176224]
        automated match to d1fi8a_
        complexed with so4
      2. 2057700Domain d3fzzb_: 3fzz B: [176225]
        automated match to d1fi8a_
        complexed with so4
    2. Domains for 3g01:
      1. 2057697Domain d3g01a_: 3g01 A: [176226]
        automated match to d1fi8a_
        mutant
      2. 2057698Domain d3g01b_: 3g01 B: [176227]
        automated match to d1fi8a_
        mutant
    3. Domains for 5fcr:
      1. 2281114Domain d5fcrb_: 5fcr B: [324415]
        automated match to d4d9qa_
        complexed with dms, epe, gol, so4
      2. 2281136Domain d5fcra_: 5fcr A: [324437]
        automated match to d4d9qa_
        complexed with dms, epe, gol, so4
      3. 2281157Domain d5fcrd_: 5fcr D: [324458]
        automated match to d4d9qa_
        complexed with dms, epe, gol, so4
      4. 2281175Domain d5fcrc_: 5fcr C: [324476]
        automated match to d4d9qa_
        complexed with dms, epe, gol, so4
    4. Domain for 5gvt:
  13. 2057701Oryzias latipes [TaxId:8090] [237103] (1 PDB entry)
  14. 2057704Pig (Sus scrofa) [TaxId:9823] [193403] (1 PDB entry)

More info for Protein automated matches from b.47.1.2: Eukaryotic proteases

Timeline for Protein automated matches from b.47.1.2: Eukaryotic proteases: