Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1190016Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1203810Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 1204903Superfamily d.58.6: Nucleoside diphosphate kinase, NDK [54919] (2 families) (S)
  5. 1204904Family d.58.6.1: Nucleoside diphosphate kinase, NDK [54920] (2 proteins)
  6. 1205133Protein automated matches [190032] (10 species)
    not a true protein

Species:

  1. 1205134Acanthamoeba polyphaga mimivirus [TaxId:212035] [188891] (24 PDB entries)
    1. Domain for 3b6b:
    2. Domains for 3ddi:
      1. 1205151Domain d3ddia_: 3ddi A: [173834]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      2. 1205152Domain d3ddib_: 3ddi B: [173835]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
    3. Domains for 3dkd:
      1. 1205153Domain d3dkda_: 3dkd A: [174030]
        automated match to d2b8pa1
        complexed with gdp, mg; mutant
      2. 1205154Domain d3dkdb_: 3dkd B: [174031]
        automated match to d2b8pa1
        complexed with gdp, mg; mutant
    4. Domains for 3ee3:
      1. 1205192Domain d3ee3a_: 3ee3 A: [174870]
        automated match to d2b8pa1
        complexed with cdp, mg
      2. 1205193Domain d3ee3b_: 3ee3 B: [174871]
        automated match to d2b8pa1
        complexed with cdp, mg
      3. 1205194Domain d3ee3c_: 3ee3 C: [174872]
        automated match to d2b8pa1
        complexed with cdp, mg
      4. 1205195Domain d3ee3d_: 3ee3 D: [174873]
        automated match to d2b8pa1
        complexed with cdp, mg
      5. 1205196Domain d3ee3e_: 3ee3 E: [174874]
        automated match to d2b8pa1
        complexed with cdp, mg
      6. 1205197Domain d3ee3f_: 3ee3 F: [174875]
        automated match to d2b8pa1
        complexed with cdp, mg
    5. Domains for 3eic:
      1. 1205166Domain d3eica_: 3eic A: [174944]
        automated match to d2b8pa1
        complexed with mg, udp
      2. 1205167Domain d3eicb_: 3eic B: [174945]
        automated match to d2b8pa1
        complexed with mg, udp
      3. 1205168Domain d3eicc_: 3eic C: [174946]
        automated match to d2b8pa1
        complexed with mg, udp
      4. 1205169Domain d3eicd_: 3eic D: [174947]
        automated match to d2b8pa1
        complexed with mg, udp
      5. 1205170Domain d3eice_: 3eic E: [174948]
        automated match to d2b8pa1
        complexed with mg, udp
      6. 1205171Domain d3eicf_: 3eic F: [174949]
        automated match to d2b8pa1
        complexed with mg, udp
    6. Domains for 3ejm:
      1. 1205157Domain d3ejma_: 3ejm A: [174986]
        automated match to d2b8pa1
        complexed with gdp, mg; mutant
      2. 1205158Domain d3ejmb_: 3ejm B: [174987]
        automated match to d2b8pa1
        complexed with gdp, mg; mutant
    7. Domains for 3elh:
      1. 1205186Domain d3elha_: 3elh A: [175055]
        automated match to d2b8pa1
        complexed with dud, mg
      2. 1205187Domain d3elhb_: 3elh B: [175056]
        automated match to d2b8pa1
        complexed with dud, mg
      3. 1205188Domain d3elhc_: 3elh C: [175057]
        automated match to d2b8pa1
        complexed with dud, mg
      4. 1205189Domain d3elhd_: 3elh D: [175058]
        automated match to d2b8pa1
        complexed with dud, mg
      5. 1205190Domain d3elhe_: 3elh E: [175059]
        automated match to d2b8pa1
        complexed with dud, mg
      6. 1205191Domain d3elhf_: 3elh F: [175060]
        automated match to d2b8pa1
        complexed with dud, mg
    8. Domains for 3em1:
      1. 1205137Domain d3em1a_: 3em1 A: [175071]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      2. 1205138Domain d3em1b_: 3em1 B: [175072]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
    9. Domains for 3emt:
      1. 1205141Domain d3emta_: 3emt A: [175090]
        automated match to d2b8pa1
        complexed with dgi, mg; mutant
      2. 1205142Domain d3emtb_: 3emt B: [175091]
        automated match to d2b8pa1
        complexed with dgi, mg; mutant
    10. Domains for 3ena:
      1. 1205139Domain d3enaa_: 3ena A: [175096]
        automated match to d2b8pa1
        complexed with dgi, mg; mutant
      2. 1205140Domain d3enab_: 3ena B: [175097]
        automated match to d2b8pa1
        complexed with dgi, mg; mutant
    11. Domains for 3etm:
      1. 1205155Domain d3etma_: 3etm A: [175214]
        automated match to d2b8pa1
        complexed with cdp, mg; mutant
      2. 1205156Domain d3etmb_: 3etm B: [175215]
        automated match to d2b8pa1
        complexed with cdp, mg; mutant
    12. Domains for 3evm:
      1. 1205143Domain d3evma_: 3evm A: [175255]
        automated match to d2b8pa1
        complexed with mg, yyy; mutant
      2. 1205144Domain d3evmb_: 3evm B: [175256]
        automated match to d2b8pa1
        complexed with mg, yyy; mutant
    13. Domains for 3evo:
      1. 1205135Domain d3evoa_: 3evo A: [175257]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      2. 1205136Domain d3evob_: 3evo B: [175258]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
    14. Domains for 3evw:
      1. 1205216Domain d3evwa_: 3evw A: [175261]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      2. 1205217Domain d3evwb_: 3evw B: [175262]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      3. 1205218Domain d3evwc_: 3evw C: [175263]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      4. 1205219Domain d3evwd_: 3evw D: [175264]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      5. 1205220Domain d3evwe_: 3evw E: [175265]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      6. 1205221Domain d3evwf_: 3evw F: [175266]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
    15. Domains for 3fbb:
      1. 1205174Domain d3fbba_: 3fbb A: [175637]
        automated match to d2b8pa1
        complexed with mg, udp; mutant
      2. 1205175Domain d3fbbb_: 3fbb B: [175638]
        automated match to d2b8pa1
        complexed with mg, udp; mutant
      3. 1205176Domain d3fbbc_: 3fbb C: [175639]
        automated match to d2b8pa1
        complexed with mg, udp; mutant
      4. 1205177Domain d3fbbd_: 3fbb D: [175640]
        automated match to d2b8pa1
        complexed with mg, udp; mutant
      5. 1205178Domain d3fbbe_: 3fbb E: [175641]
        automated match to d2b8pa1
        complexed with mg, udp; mutant
      6. 1205179Domain d3fbbf_: 3fbb F: [175642]
        automated match to d2b8pa1
        complexed with mg, udp; mutant
    16. Domains for 3fbc:
      1. 1205210Domain d3fbca_: 3fbc A: [175643]
        automated match to d2b8pa1
        complexed with mg, po4, tyd; mutant
      2. 1205211Domain d3fbcb_: 3fbc B: [175644]
        automated match to d2b8pa1
        complexed with mg, po4, tyd; mutant
      3. 1205212Domain d3fbcc_: 3fbc C: [175645]
        automated match to d2b8pa1
        complexed with mg, po4, tyd; mutant
      4. 1205213Domain d3fbcd_: 3fbc D: [175646]
        automated match to d2b8pa1
        complexed with mg, po4, tyd; mutant
      5. 1205214Domain d3fbce_: 3fbc E: [175647]
        automated match to d2b8pa1
        complexed with mg, po4, tyd; mutant
      6. 1205215Domain d3fbcf_: 3fbc F: [175648]
        automated match to d2b8pa1
        complexed with mg, po4, tyd; mutant
    17. Domains for 3fbe:
      1. 1205180Domain d3fbea_: 3fbe A: [175651]
        automated match to d2b8pa1
        complexed with gdp, mg; mutant
      2. 1205181Domain d3fbeb_: 3fbe B: [175652]
        automated match to d2b8pa1
        complexed with gdp, mg; mutant
      3. 1205182Domain d3fbec_: 3fbe C: [175653]
        automated match to d2b8pa1
        complexed with gdp, mg; mutant
      4. 1205183Domain d3fbed_: 3fbe D: [175654]
        automated match to d2b8pa1
        complexed with gdp, mg; mutant
      5. 1205184Domain d3fbee_: 3fbe E: [175655]
        automated match to d2b8pa1
        complexed with gdp, mg; mutant
      6. 1205185Domain d3fbef_: 3fbe F: [175656]
        automated match to d2b8pa1
        complexed with gdp, mg; mutant
    18. Domains for 3fbf:
      1. 1205204Domain d3fbfa_: 3fbf A: [175657]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      2. 1205205Domain d3fbfb_: 3fbf B: [175658]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      3. 1205206Domain d3fbfc_: 3fbf C: [175659]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      4. 1205207Domain d3fbfd_: 3fbf D: [175660]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      5. 1205208Domain d3fbfe_: 3fbf E: [175661]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      6. 1205209Domain d3fbff_: 3fbf F: [175662]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
    19. Domains for 3fc9:
      1. 1205222Domain d3fc9a_: 3fc9 A: [175675]
        automated match to d2b8pa1
        complexed with cdp, ctp, mg; mutant
      2. 1205223Domain d3fc9b_: 3fc9 B: [175676]
        automated match to d2b8pa1
        complexed with cdp, ctp, mg; mutant
      3. 1205224Domain d3fc9c_: 3fc9 C: [175677]
        automated match to d2b8pa1
        complexed with cdp, ctp, mg; mutant
      4. 1205225Domain d3fc9d_: 3fc9 D: [175678]
        automated match to d2b8pa1
        complexed with cdp, ctp, mg; mutant
      5. 1205226Domain d3fc9e_: 3fc9 E: [175679]
        automated match to d2b8pa1
        complexed with cdp, ctp, mg; mutant
      6. 1205227Domain d3fc9f_: 3fc9 F: [175680]
        automated match to d2b8pa1
        complexed with cdp, ctp, mg; mutant
    20. Domains for 3fcv:
      1. 1205172Domain d3fcva_: 3fcv A: [175693]
        automated match to d2b8pa1
        complexed with dud, mg; mutant
      2. 1205173Domain d3fcvb_: 3fcv B: [175694]
        automated match to d2b8pa1
        complexed with dud, mg; mutant
    21. Domains for 3fcw:
      1. 1205198Domain d3fcwa_: 3fcw A: [175695]
        automated match to d2b8pa1
        complexed with mg, udp; mutant
      2. 1205199Domain d3fcwb_: 3fcw B: [175696]
        automated match to d2b8pa1
        complexed with mg, udp; mutant
      3. 1205200Domain d3fcwc_: 3fcw C: [175697]
        automated match to d2b8pa1
        complexed with mg, udp; mutant
      4. 1205201Domain d3fcwd_: 3fcw D: [175698]
        automated match to d2b8pa1
        complexed with mg, udp; mutant
      5. 1205202Domain d3fcwe_: 3fcw E: [175699]
        automated match to d2b8pa1
        complexed with mg, udp; mutant
      6. 1205203Domain d3fcwf_: 3fcw F: [175700]
        automated match to d2b8pa1
        complexed with mg, udp; mutant
    22. Domains for 3g2x:
      1. 1205228Domain d3g2xa_: 3g2x A: [176308]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      2. 1205229Domain d3g2xb_: 3g2x B: [176309]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      3. 1205230Domain d3g2xc_: 3g2x C: [176310]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      4. 1205231Domain d3g2xd_: 3g2x D: [176311]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      5. 1205232Domain d3g2xe_: 3g2x E: [176312]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
      6. 1205233Domain d3g2xf_: 3g2x F: [176313]
        automated match to d2b8pa1
        complexed with mg, tyd; mutant
    23. Domains for 3gp9:
      1. 1205145Domain d3gp9a_: 3gp9 A: [176804]
        automated match to d2b8pa1
        complexed with gdp, mg, po4
      2. 1205146Domain d3gp9b_: 3gp9 B: [176805]
        automated match to d2b8pa1
        complexed with gdp, mg, po4
      3. 1205147Domain d3gp9c_: 3gp9 C: [176806]
        automated match to d2b8pa1
        complexed with gdp, mg, po4
      4. 1205148Domain d3gp9d_: 3gp9 D: [176807]
        automated match to d2b8pa1
        complexed with gdp, mg, po4
      5. 1205149Domain d3gp9e_: 3gp9 E: [176808]
        automated match to d2b8pa1
        complexed with gdp, mg, po4
      6. 1205150Domain d3gp9f_: 3gp9 F: [176809]
        automated match to d2b8pa1
        complexed with gdp, mg, po4
    24. Domains for 3gpa:
      1. 1205160Domain d3gpaa_: 3gpa A: [176810]
        automated match to d2b8pa1
        complexed with cdp, mg, po4; mutant
      2. 1205161Domain d3gpab_: 3gpa B: [176811]
        automated match to d2b8pa1
        complexed with cdp, mg, po4; mutant
      3. 1205162Domain d3gpac_: 3gpa C: [176812]
        automated match to d2b8pa1
        complexed with cdp, mg, po4; mutant
      4. 1205163Domain d3gpad_: 3gpa D: [176813]
        automated match to d2b8pa1
        complexed with cdp, mg, po4; mutant
      5. 1205164Domain d3gpae_: 3gpa E: [176814]
        automated match to d2b8pa1
        complexed with cdp, mg, po4; mutant
      6. 1205165Domain d3gpaf_: 3gpa F: [176815]
        automated match to d2b8pa1
        complexed with cdp, mg, po4; mutant
  2. 1205234Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [188810] (1 PDB entry)
  3. 1205236Burkholderia thailandensis [TaxId:271848] [193397] (1 PDB entry)
  4. 1205238Campylobacter jejuni [TaxId:192222] [189538] (1 PDB entry)
  5. 1205243Giardia lamblia [TaxId:184922] [189932] (1 PDB entry)
  6. 1205245Leishmania major [TaxId:5664] [189935] (4 PDB entries)
    1. Domain for 3ngr:
    2. Domains for 3ngs:
      1. 1205246Domain d3ngsa_: 3ngs A: [182265]
        automated match to d1nuea_
        complexed with dtt, po4
      2. 1205247Domain d3ngsb_: 3ngs B: [182266]
        automated match to d1nuea_
        complexed with dtt, po4
      3. 1205248Domain d3ngsc_: 3ngs C: [182267]
        automated match to d1nuea_
        complexed with dtt, po4
    3. Domains for 3ngt:
      1. 1205251Domain d3ngta_: 3ngt A: [182268]
        automated match to d1nuea_
        complexed with amp
      2. 1205252Domain d3ngtb_: 3ngt B: [182269]
        automated match to d1nuea_
        complexed with amp
      3. 1205253Domain d3ngtc_: 3ngt C: [182270]
        automated match to d1nuea_
        complexed with amp
      4. 1205254Domain d3ngtd_: 3ngt D: [182271]
        automated match to d1nuea_
        complexed with amp
      5. 1205255Domain d3ngte_: 3ngt E: [182272]
        automated match to d1nuea_
        complexed with amp
      6. 1205256Domain d3ngtf_: 3ngt F: [182273]
        automated match to d1nuea_
        complexed with amp
      7. 1205257Domain d3ngtg_: 3ngt G: [182274]
        automated match to d1nuea_
        complexed with amp
      8. 1205258Domain d3ngth_: 3ngt H: [182275]
        automated match to d1nuea_
        complexed with amp
      9. 1205259Domain d3ngti_: 3ngt I: [182276]
        automated match to d1nuea_
        complexed with amp
      10. 1205260Domain d3ngtj_: 3ngt J: [182277]
        automated match to d1nuea_
        complexed with amp
      11. 1205261Domain d3ngtk_: 3ngt K: [182278]
        automated match to d1nuea_
        complexed with amp
      12. 1205262Domain d3ngtl_: 3ngt L: [182279]
        automated match to d1nuea_
        complexed with amp
      13. 1205263Domain d3ngtm_: 3ngt M: [182280]
        automated match to d1nuea_
        complexed with amp
      14. 1205264Domain d3ngtn_: 3ngt N: [182281]
        automated match to d1nuea_
        complexed with amp
    4. Domains for 3ngu:
      1. 1205249Domain d3ngua_: 3ngu A: [182282]
        automated match to d1nuea_
        complexed with adp
      2. 1205250Domain d3ngub_: 3ngu B: [182283]
        automated match to d1nuea_
        complexed with adp
  7. 1205266Pyrococcus horikoshii [TaxId:70601] [187576] (1 PDB entry)
  8. 1205268Rice (Oryza sativa) [TaxId:4530] [186751] (1 PDB entry)
  9. 1205280Slime mold (Dictyostelium discoideum) [TaxId:44689] [186756] (2 PDB entries)
    1. Domains for 1s5z:
      1. 1205287Domain d1s5za_: 1s5z A: [118868]
        automated match to d1f6tb_
        complexed with po4, son
      2. 1205288Domain d1s5zb_: 1s5z B: [118869]
        automated match to d1f6tb_
        complexed with po4, son
      3. 1205289Domain d1s5zc_: 1s5z C: [118870]
        automated match to d1f6tb_
        complexed with po4, son
      4. 1205290Domain d1s5zd_: 1s5z D: [118871]
        automated match to d1f6tb_
        complexed with po4, son
      5. 1205291Domain d1s5ze_: 1s5z E: [118872]
        automated match to d1f6tb_
        complexed with po4, son
      6. 1205292Domain d1s5zf_: 1s5z F: [118873]
        automated match to d1f6tb_
        complexed with po4, son
    2. Domains for 3fkb:
      1. 1205281Domain d3fkba_: 3fkb A: [175849]
        automated match to d1b4sa_
        complexed with edo, gol, mg, tnm, tnv
      2. 1205282Domain d3fkbb_: 3fkb B: [175850]
        automated match to d1b4sa_
        complexed with edo, gol, mg, tnm, tnv
      3. 1205283Domain d3fkbc_: 3fkb C: [175851]
        automated match to d1b4sa_
        complexed with edo, gol, mg, tnm, tnv
      4. 1205284Domain d3fkbd_: 3fkb D: [175852]
        automated match to d1b4sa_
        complexed with edo, gol, mg, tnm, tnv
      5. 1205285Domain d3fkbe_: 3fkb E: [175853]
        automated match to d1b4sa_
        complexed with edo, gol, mg, tnm, tnv
      6. 1205286Domain d3fkbf_: 3fkb F: [175854]
        automated match to d1b4sa_
        complexed with edo, gol, mg, tnm, tnv
  10. 1205293Staphylococcus aureus [TaxId:93062] [196295] (1 PDB entry)

More info for Protein automated matches from d.58.6.1: Nucleoside diphosphate kinase, NDK

Timeline for Protein automated matches from d.58.6.1: Nucleoside diphosphate kinase, NDK: