Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2324209Fold a.60: SAM domain-like [47768] (16 superfamilies)
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. 2324210Superfamily a.60.1: SAM/Pointed domain [47769] (4 families) (S)
  5. 2324348Family a.60.1.0: automated matches [191306] (1 protein)
    not a true family
  6. 2324349Protein automated matches [190031] (2 species)
    not a true protein

Species:

  1. 2324350Fruit fly (Drosophila melanogaster) [TaxId:7227] [186750] (3 PDB entries)
    1. Domain for 1pk1:
    2. Domains for 1pk3:
      1. 2324351Domain d1pk3b_: 1pk3 B: [118716]
        Other proteins in same PDB: d1pk3a1, d1pk3a2, d1pk3c3
        automated match to d1kw4a_
        complexed with bme
      2. 2324352Domain d1pk3c2: 1pk3 C:6-80 [118717]
        Other proteins in same PDB: d1pk3a1, d1pk3a2, d1pk3c3
        automated match to d1kw4a_
        complexed with bme
    3. Domains for 5j8y:
      1. 2324354Domain d5j8ya1: 5j8y A:803-877 [317548]
        Other proteins in same PDB: d5j8ya2, d5j8yb2, d5j8yc2, d5j8yd2
        automated match to d1pk3b_
      2. 2324355Domain d5j8yb1: 5j8y B:803-877 [317612]
        Other proteins in same PDB: d5j8ya2, d5j8yb2, d5j8yc2, d5j8yd2
        automated match to d1pk3b_
      3. 2324356Domain d5j8yc1: 5j8y C:1137-1204 [317539]
        Other proteins in same PDB: d5j8ya2, d5j8yb2, d5j8yc2, d5j8yd2
        automated match to d4pzna_
      4. 2324357Domain d5j8yd1: 5j8y D:1137-1205 [317565]
        Other proteins in same PDB: d5j8ya2, d5j8yb2, d5j8yc2, d5j8yd2
        automated match to d4pzna_
  2. 2324358Human (Homo sapiens) [TaxId:9606] [188353] (22 PDB entries)
    1. Domain for 1x66:
    2. Domain for 2dkx:
    3. Domain for 2e8n:
    4. Domain for 2eam:
    5. Domain for 2ean:
    6. Domain for 2eao:
    7. Domain for 2k4p:
    8. Domain for 2ke7:
    9. Domains for 2kiv:
      1. 2324404Domain d2kiva1: 2kiv A:1-69 [242531]
        automated match to d1b4fg_
      2. 2324405Domain d2kiva2: 2kiv A:70-135 [242532]
        automated match to d1b4fg_
    10. Domains for 2kso:
      1. 2324393Domain d2ksoa_: 2kso A: [242636]
        automated match to d1f0ma_
      2. 2324394Domain d2ksob_: 2kso B: [242637]
        automated match to d2qkqa_
    11. Domain for 2lmr:
    12. Domain for 2y9t:
    13. Domains for 3bq7:
      1. 2324387Domain d3bq7a1: 3bq7 A:1-67 [172782]
        Other proteins in same PDB: d3bq7a2, d3bq7c2, d3bq7e2
        automated match to d2f3na1
      2. 2324388Domain d3bq7b_: 3bq7 B: [172783]
        Other proteins in same PDB: d3bq7a2, d3bq7c2, d3bq7e2
        automated match to d2f3na1
      3. 2324389Domain d3bq7c1: 3bq7 C:1-68 [172784]
        Other proteins in same PDB: d3bq7a2, d3bq7c2, d3bq7e2
        automated match to d2f3na1
      4. 2324390Domain d3bq7d_: 3bq7 D: [172785]
        Other proteins in same PDB: d3bq7a2, d3bq7c2, d3bq7e2
        automated match to d2f3na1
      5. 2324391Domain d3bq7e1: 3bq7 E:1-67 [172786]
        Other proteins in same PDB: d3bq7a2, d3bq7c2, d3bq7e2
        automated match to d2f3na1
      6. 2324392Domain d3bq7f_: 3bq7 F: [172787]
        Other proteins in same PDB: d3bq7a2, d3bq7c2, d3bq7e2
        automated match to d2f3na1
    14. Domain for 3bs5:
    15. Domains for 3h8m:
      1. 2324371Domain d3h8ma_: 3h8m A: [210909]
        Other proteins in same PDB: d3h8mb2
        automated match to d1b4fb_
      2. 2324372Domain d3h8mb1: 3h8m B:919-990 [210910]
        Other proteins in same PDB: d3h8mb2
        automated match to d1b4fb_
    16. Domains for 3hil:
      1. 2324360Domain d3hila_: 3hil A: [211077]
        automated match to d3kkaa_
        complexed with cl, no3
      2. 2324361Domain d3hilb_: 3hil B: [211078]
        automated match to d3kkaa_
        complexed with cl, no3
    17. Domains for 3kka:
      1. 2324366Domain d3kkaa_: 3kka A: [196506]
        automated match to d3kkad_
        complexed with cl
      2. 2324367Domain d3kkab_: 3kka B: [196505]
        automated match to d3kkad_
        complexed with cl
      3. 2324368Domain d3kkac_: 3kka C: [179398]
        automated match to d1f0ma_
        complexed with cl
      4. 2324369Domain d3kkad_: 3kka D: [179399]
        automated match to d1f0ma_
        complexed with cl
      5. 2324370Domain d3kkae_: 3kka E: [179400]
        automated match to d1f0ma_
        complexed with cl
    18. Domains for 3sei:
      1. 2324362Domain d3seia1: 3sei A:3-71 [249393]
        Other proteins in same PDB: d3seia3, d3seia4, d3seib3, d3seib4
        automated match to d1b4fg_
        complexed with cl, so4
      2. 2324363Domain d3seia2: 3sei A:72-138 [249394]
        Other proteins in same PDB: d3seia3, d3seia4, d3seib3, d3seib4
        automated match to d1b4fg_
        complexed with cl, so4
      3. 2324364Domain d3seib1: 3sei B:3-71 [249395]
        Other proteins in same PDB: d3seia3, d3seia4, d3seib3, d3seib4
        automated match to d1b4fg_
        complexed with cl, so4
      4. 2324365Domain d3seib2: 3sei B:72-138 [249396]
        Other proteins in same PDB: d3seia3, d3seia4, d3seib3, d3seib4
        automated match to d1b4fg_
        complexed with cl, so4
    19. Domains for 3sen:
      1. 2324375Domain d3sena1: 3sen A:8-74 [265362]
        automated match to d3seia1
        complexed with k
      2. 2324376Domain d3sena2: 3sen A:75-149 [265363]
        automated match to d3seia2
        complexed with k
      3. 2324377Domain d3senb1: 3sen B:8-74 [265364]
        automated match to d3seia1
        complexed with k
      4. 2324378Domain d3senb2: 3sen B:75-146 [265365]
        automated match to d3seia2
        complexed with k
      5. 2324379Domain d3senc1: 3sen C:8-74 [265366]
        automated match to d3seia1
        complexed with k
      6. 2324380Domain d3senc2: 3sen C:75-143 [265367]
        automated match to d3seia2
        complexed with k
      7. 2324381Domain d3send1: 3sen D:8-74 [265368]
        automated match to d3seia1
        complexed with k
      8. 2324382Domain d3send2: 3sen D:75-144 [265369]
        automated match to d3seia2
        complexed with k
    20. Domains for 4is7:
      1. 2324385Domain d4is7a1: 4is7 A:21-88 [266462]
        automated match to d3seia1
      2. 2324386Domain d4is7a2: 4is7 A:89-160 [266463]
        automated match to d3seia2
    21. Domains for 4mhv:
      1. 2324373Domain d4mhva_: 4mhv A: [236463]
        Other proteins in same PDB: d4mhvb2
        automated match to d1sxda_
        complexed with act, ca, gol
      2. 2324374Domain d4mhvb1: 4mhv B:76-170 [236462]
        Other proteins in same PDB: d4mhvb2
        automated match to d1sxda_
        complexed with act, ca, gol
    22. Domains for 5l1m:
      1. 2324383Domain d5l1ma1: 5l1m A:21-88 [321135]
        automated match to d4is7a1
      2. 2324384Domain d5l1ma2: 5l1m A:89-160 [321136]
        automated match to d4is7a2

More info for Protein automated matches from a.60.1.0: automated matches

Timeline for Protein automated matches from a.60.1.0: automated matches: