SCOPe 2.05: Species: Helicobacter pylori [TaxId: 85963]

Lineage for Species: Helicobacter pylori [TaxId: 85963]

Root: SCOPe 2.05
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops

Superfamily c.56.2: Purine and uridine phosphorylases [53167] (2 families)

(S)

complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8

Family c.56.2.0: automated matches [191488] (1 protein)
not a true family
Protein automated matches [190781] (36 species)
not a true protein
Species Helicobacter pylori [TaxId:85963] [189517] (11 PDB entries)

PDB entries in Species: Helicobacter pylori [TaxId: 85963]:

Domain(s) for 3nm4:
1. Domain d3nm4a_: 3nm4 A: [182385]
  automated match to d1jysa_
  complexed with edo, trs
2. Domain d3nm4b_: 3nm4 B: [182386]
  automated match to d1jysa_
  complexed with edo, trs
Domain(s) for 3nm5:
1. Domain d3nm5a_: 3nm5 A: [182387]
  automated match to d1jysa_
  complexed with fmc
2. Domain d3nm5b_: 3nm5 B: [182388]
  automated match to d1jysa_
  complexed with fmc
Domain(s) for 3nm6:
- Domain d3nm6b_: 3nm6 B: [182389]
  automated match to d1jysa_
  complexed with ade, edo, trs
Domain(s) for 4ffs:
- Domain d4ffsa_: 4ffs A: [194638]
  automated match to d3nm6b_
  complexed with big, cl
Domain(s) for 4oy3:
- Domain d4oy3a_: 4oy3 A: [261867]
  automated match to d4p54a_
  complexed with cl, sah; mutant
Domain(s) for 4p54:
- Domain d4p54a_: 4p54 A: [238310]
  automated match to d4bmza_
  complexed with cl, mta; mutant
Domain(s) for 4wkn:
- Domain d4wkna_: 4wkn A: [279639]
  automated match to d3nm6b_
  complexed with tdi
Domain(s) for 4wko:
- Domain d4wkoa_: 4wko A: [279641]
  automated match to d3nm6b_
  complexed with hce
Domain(s) for 4wkp:
1. Domain d4wkpa_: 4wkp A: [279637]
  automated match to d3nm6b_
  complexed with 3qa, so4
2. Domain d4wkpb_: 4wkp B: [279636]
  automated match to d3nm6b_
  complexed with 3qa, so4
3. Domain d4wkpc_: 4wkp C: [279640]
  automated match to d3nm6b_
  complexed with 3qa, so4
4. Domain d4wkpd_: 4wkp D: [279638]
  automated match to d3nm6b_
  complexed with 3qa, so4
Domain(s) for 4ynb:
- Domain d4ynba_: 4ynb A: [279654]
  automated match to d3nm6b_
  complexed with 4eh, gol, peg
Domain(s) for 4yo8:
1. Domain d4yo8a_: 4yo8 A: [279655]
  automated match to d3nm6b_
  complexed with 4ez, zn
2. Domain d4yo8b_: 4yo8 B: [279656]
  automated match to d3nm6b_
  complexed with 4ez, zn

More info for Species Helicobacter pylori [TaxId:85963] from c.56.2.0 automated matches

Timeline for Species Helicobacter pylori [TaxId:85963] from c.56.2.0 automated matches:

Species Helicobacter pylori [TaxId:85963] from c.56.2.0 automated matches first appeared in SCOPe 2.01
Species Helicobacter pylori [TaxId:85963] from c.56.2.0 automated matches appears in SCOPe 2.04
Species Helicobacter pylori [TaxId:85963] from c.56.2.0 automated matches appears in SCOPe 2.06
Species Helicobacter pylori [TaxId:85963] from c.56.2.0 automated matches appears in the current release, SCOPe 2.08