Lineage for Species: Sphingobium yanoikuyae [TaxId: 13690]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2045320Fold b.33: ISP domain [50021] (1 superfamily)
    consists of two all-beta subdomains: conserved small domain has a rubredoxin-like fold; larger domain consists of 6 beta-stands packed in either sandwich of two 3-stranded sheets or closed barrel (n=6; S=8)
  4. 2045321Superfamily b.33.1: ISP domain [50022] (4 families) (S)
  5. 2045541Family b.33.1.0: automated matches [191455] (1 protein)
    not a true family
  6. 2045542Protein automated matches [190701] (11 species)
    not a true protein
  7. 2045641Species Sphingobium yanoikuyae [TaxId:13690] [187845] (3 PDB entries)

PDB entries in Species: Sphingobium yanoikuyae [TaxId: 13690]:

  1. Domain(s) for 2gbw:
    1. 2045642Domain d2gbwa1: 2gbw A:6-152 [197938]
      Other proteins in same PDB: d2gbwa2, d2gbwb_, d2gbwc2, d2gbwd_, d2gbwe2, d2gbwf_
      automated match to d1o7na1
      complexed with fe, fes, oxy
    2. 2045643Domain d2gbwc1: 2gbw C:6-152 [197940]
      Other proteins in same PDB: d2gbwa2, d2gbwb_, d2gbwc2, d2gbwd_, d2gbwe2, d2gbwf_
      automated match to d1o7na1
      complexed with fe, fes, oxy
    3. 2045644Domain d2gbwe1: 2gbw E:6-152 [197942]
      Other proteins in same PDB: d2gbwa2, d2gbwb_, d2gbwc2, d2gbwd_, d2gbwe2, d2gbwf_
      automated match to d1o7na1
      complexed with fe, fes, oxy
  2. Domain(s) for 2gbx:
    1. 2045647Domain d2gbxa1: 2gbx A:6-152 [197944]
      Other proteins in same PDB: d2gbxa2, d2gbxb_, d2gbxc2, d2gbxd_, d2gbxe2, d2gbxf_
      automated match to d1o7na1
      complexed with bnl, fe, fes, zn
    2. 2045648Domain d2gbxc1: 2gbx C:6-152 [197946]
      Other proteins in same PDB: d2gbxa2, d2gbxb_, d2gbxc2, d2gbxd_, d2gbxe2, d2gbxf_
      automated match to d1o7na1
      complexed with bnl, fe, fes, zn
    3. 2045649Domain d2gbxe1: 2gbx E:6-152 [197948]
      Other proteins in same PDB: d2gbxa2, d2gbxb_, d2gbxc2, d2gbxd_, d2gbxe2, d2gbxf_
      automated match to d1o7na1
      complexed with bnl, fe, fes, zn
  3. Domain(s) for 2i7f:
    1. 2045645Domain d2i7fa_: 2i7f A: [165422]
      automated match to d1fqta_
      complexed with cit, fes, so4
    2. 2045646Domain d2i7fb_: 2i7f B: [165423]
      automated match to d1fqta_
      complexed with cit, fes, so4

More info for Species Sphingobium yanoikuyae [TaxId:13690] from b.33.1.0 automated matches

Timeline for Species Sphingobium yanoikuyae [TaxId:13690] from b.33.1.0 automated matches: