Lineage for Species: Sphingobium yanoikuyae [TaxId: 13690]

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2504826Fold d.17: Cystatin-like [54402] (7 superfamilies)
    Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
  4. 2505360Superfamily d.17.4: NTF2-like [54427] (31 families) (S)
    has a beta-alpha(2)-beta insertion after the main helix
  5. 2506189Family d.17.4.0: automated matches [191337] (1 protein)
    not a true family
  6. 2506190Protein automated matches [190205] (28 species)
    not a true protein
  7. 2506279Species Sphingobium yanoikuyae [TaxId:13690] [187741] (2 PDB entries)

PDB entries in Species: Sphingobium yanoikuyae [TaxId: 13690]:

  1. Domain(s) for 2gbw:
    1. 2506280Domain d2gbwb_: 2gbw B: [164658]
      Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
      automated match to d1ulid_
      complexed with fe, fes, oxy
    2. 2506281Domain d2gbwd_: 2gbw D: [164659]
      Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
      automated match to d1ulid_
      complexed with fe, fes, oxy
    3. 2506282Domain d2gbwf_: 2gbw F: [164660]
      Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
      automated match to d1ulid_
      complexed with fe, fes, oxy
  2. Domain(s) for 2gbx:
    1. 2506283Domain d2gbxb_: 2gbx B: [164661]
      Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
      automated match to d1ulid_
      complexed with bnl, fe, fes, zn
    2. 2506284Domain d2gbxd_: 2gbx D: [164662]
      Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
      automated match to d1ulid_
      complexed with bnl, fe, fes, zn
    3. 2506285Domain d2gbxf_: 2gbx F: [164663]
      Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
      automated match to d1ulid_
      complexed with bnl, fe, fes, zn

More info for Species Sphingobium yanoikuyae [TaxId:13690] from d.17.4.0 automated matches

Timeline for Species Sphingobium yanoikuyae [TaxId:13690] from d.17.4.0 automated matches: