Lineage for Species: Human immunodeficiency virus 1 [TaxId: 11676]

  1. Root: SCOPe 2.01
  2. 929298Class b: All beta proteins [48724] (174 folds)
  3. 955287Fold b.50: Acid proteases [50629] (1 superfamily)
    barrel, closed; n=6, S=10, complex topology
  4. 955288Superfamily b.50.1: Acid proteases [50630] (4 families) (S)
  5. 955289Family b.50.1.1: Retroviral protease (retropepsin) [50631] (9 proteins)
    dimer of identical mono-domain chains, each containing (6,10) barrel
  6. 956189Protein automated matches [190433] (10 species)
    not a true protein
  7. 956217Species Human immunodeficiency virus 1 [TaxId:11676] [187327] (21 PDB entries)

PDB entries in Species: Human immunodeficiency virus 1 [TaxId: 11676]:

  1. Domain(s) for 1z8c:
    1. 956249Domain d1z8ca_: 1z8c A: [162400]
      automated match to d1lzqa_
      complexed with 0zs, so4; mutant
    2. 956250Domain d1z8cb_: 1z8c B: [162401]
      automated match to d1lzqa_
      complexed with 0zs, so4; mutant
  2. Domain(s) for 2b60:
    1. 956251Domain d2b60a_: 2b60 A: [162995]
      automated match to d1sgua_
      complexed with gol, rit; mutant
    2. 956252Domain d2b60b_: 2b60 B: [162996]
      automated match to d1sgua_
      complexed with gol, rit; mutant
  3. Domain(s) for 2b7z:
    1. 956253Domain d2b7za_: 2b7z A: [163000]
      automated match to d1sgua_
      complexed with mk1; mutant
    2. 956254Domain d2b7zb_: 2b7z B: [163001]
      automated match to d1sgua_
      complexed with mk1; mutant
  4. Domain(s) for 2f3k:
    1. 956229Domain d2f3ka_: 2f3k A: [164265]
      automated match to d1kzka_
      complexed with po4, ro1
    2. 956230Domain d2f3kb_: 2f3k B: [164266]
      automated match to d1kzka_
      complexed with po4, ro1
  5. Domain(s) for 2fdd:
    1. 956237Domain d2fdda_: 2fdd A: [164334]
      automated match to d1rpia_
      complexed with 385
    2. 956238Domain d2fddb_: 2fdd B: [164335]
      automated match to d1rpia_
      complexed with 385
  6. Domain(s) for 2fle:
    1. 956247Domain d2flea_: 2fle A: [164426]
      automated match to d1hvsa_
      complexed with ai, gol; mutant
    2. 956248Domain d2fleb_: 2fle B: [164427]
      automated match to d1hvsa_
      complexed with ai, gol; mutant
  7. Domain(s) for 2g69:
  8. Domain(s) for 2hb2:
  9. Domain(s) for 2hc0:
    1. 956224Domain d2hc0a_: 2hc0 A: [165044]
      automated match to d1k6ca_
      complexed with ab2, br; mutant
    2. 956225Domain d2hc0b_: 2hc0 B: [165045]
      automated match to d1k6ca_
      complexed with ab2, br; mutant
  10. Domain(s) for 2j9j:
    1. 956218Domain d2j9ja_: 2j9j A: [165954]
      automated match to d1b6ka_
      protein/DNA complex; protein/RNA complex; complexed with act, gol, so4
    2. 956219Domain d2j9jb_: 2j9j B: [165955]
      automated match to d1b6ka_
      protein/DNA complex; protein/RNA complex; complexed with act, gol, so4
  11. Domain(s) for 2je4:
    1. 956220Domain d2je4a_: 2je4 A: [166142]
      automated match to d1b6ka_
      complexed with act, gol, so4
    2. 956221Domain d2je4b_: 2je4 B: [166143]
      automated match to d1b6ka_
      complexed with act, gol, so4
  12. Domain(s) for 2p3d:
    1. 956256Domain d2p3da_: 2p3d A: [166995]
      automated match to d1a8ga_
      complexed with 3tl; mutant
    2. 956257Domain d2p3db_: 2p3d B: [166996]
      automated match to d1a8ga_
      complexed with 3tl; mutant
  13. Domain(s) for 2qd6:
    1. 956222Domain d2qd6a_: 2qd6 A: [167535]
      automated match to d1fgcc_
      complexed with 065, act, cl, na; mutant
    2. 956223Domain d2qd6b_: 2qd6 B: [167536]
      automated match to d1fgcc_
      complexed with 065, act, cl, na; mutant
  14. Domain(s) for 3o9a:
    1. 956243Domain d3o9aa_: 3o9a A: [182882]
      automated match to d1kzka_
      complexed with k14, po4
    2. 956244Domain d3o9ab_: 3o9a B: [182883]
      automated match to d1kzka_
      complexed with k14, po4
  15. Domain(s) for 3o9c:
    1. 956241Domain d3o9ca_: 3o9c A: [182884]
      automated match to d1kzka_
      complexed with k20
    2. 956242Domain d3o9cb_: 3o9c B: [182885]
      automated match to d1kzka_
      complexed with k20
  16. Domain(s) for 3o9d:
    1. 956239Domain d3o9da_: 3o9d A: [182886]
      automated match to d1kzka_
      complexed with act, k19, po4
    2. 956240Domain d3o9db_: 3o9d B: [182887]
      automated match to d1kzka_
      complexed with act, k19, po4
  17. Domain(s) for 3o9f:
    1. 956233Domain d3o9fa_: 3o9f A: [182888]
      automated match to d1kzka_
      complexed with act, k2d, po4
    2. 956234Domain d3o9fb_: 3o9f B: [182889]
      automated match to d1kzka_
      complexed with act, k2d, po4
  18. Domain(s) for 3o9g:
    1. 956231Domain d3o9ga_: 3o9g A: [182890]
      automated match to d1kzka_
      complexed with f53, po4
    2. 956232Domain d3o9gb_: 3o9g B: [182891]
      automated match to d1kzka_
      complexed with f53, po4
  19. Domain(s) for 3o9h:
    1. 956235Domain d3o9ha_: 3o9h A: [182892]
      automated match to d1kzka_
      complexed with act, k2e, po4
    2. 956236Domain d3o9hb_: 3o9h B: [182893]
      automated match to d1kzka_
      complexed with act, k2e, po4
  20. Domain(s) for 3o9i:
    1. 956227Domain d3o9ia_: 3o9i A: [182894]
      automated match to d1kzka_
      complexed with a61, po4
    2. 956228Domain d3o9ib_: 3o9i B: [182895]
      automated match to d1kzka_
      complexed with a61, po4
  21. Domain(s) for 3r4b:
    1. 956245Domain d3r4ba_: 3r4b A: [184797]
      automated match to d1kzka_
      complexed with 74t, po4
    2. 956246Domain d3r4bb_: 3r4b B: [184798]
      automated match to d1kzka_
      complexed with 74t, po4

More info for Species Human immunodeficiency virus 1 [TaxId:11676] from b.50.1.1 automated matches

Timeline for Species Human immunodeficiency virus 1 [TaxId:11676] from b.50.1.1 automated matches: