Lineage for Species: Human immunodeficiency virus 1 [TaxId: 11676]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2058814Fold b.50: Acid proteases [50629] (1 superfamily)
    barrel, closed; n=6, S=10, complex topology
  4. 2058815Superfamily b.50.1: Acid proteases [50630] (4 families) (S)
  5. 2058816Family b.50.1.1: Retroviral protease (retropepsin) [50631] (9 protein domains)
    dimer of identical mono-domain chains, each containing (6,10) barrel
  6. 2060049Protein automated matches [190433] (11 species)
    not a true protein
  7. 2060093Species Human immunodeficiency virus 1 [TaxId:11676] [187327] (25 PDB entries)

PDB entries in Species: Human immunodeficiency virus 1 [TaxId: 11676]:

  1. Domain(s) for 1z8c:
    1. 2060123Domain d1z8ca_: 1z8c A: [162400]
      automated match to d1lzqa_
      complexed with 0zs, so4; mutant
    2. 2060124Domain d1z8cb_: 1z8c B: [162401]
      automated match to d1lzqa_
      complexed with 0zs, so4; mutant
  2. Domain(s) for 2b60:
    1. 2060125Domain d2b60a_: 2b60 A: [162995]
      automated match to d1sgua_
      complexed with gol, rit; mutant
    2. 2060126Domain d2b60b_: 2b60 B: [162996]
      automated match to d1sgua_
      complexed with gol, rit; mutant
  3. Domain(s) for 2b7z:
    1. 2060127Domain d2b7za_: 2b7z A: [163000]
      automated match to d1sgua_
      complexed with mk1; mutant
    2. 2060128Domain d2b7zb_: 2b7z B: [163001]
      automated match to d1sgua_
      complexed with mk1; mutant
  4. Domain(s) for 2f3k:
    1. 2060103Domain d2f3ka_: 2f3k A: [164265]
      automated match to d1kzka_
      complexed with po4, ro1
    2. 2060104Domain d2f3kb_: 2f3k B: [164266]
      automated match to d1kzka_
      complexed with po4, ro1
  5. Domain(s) for 2fdd:
    1. 2060105Domain d2fdda_: 2fdd A: [164334]
      automated match to d1rpia_
      complexed with 385
    2. 2060106Domain d2fddb_: 2fdd B: [164335]
      automated match to d1rpia_
      complexed with 385
  6. Domain(s) for 2fle:
    1. 2060111Domain d2flea_: 2fle A: [164426]
      automated match to d1hvsa_
      complexed with ai, gol; mutant
    2. 2060112Domain d2fleb_: 2fle B: [164427]
      automated match to d1hvsa_
      complexed with ai, gol; mutant
  7. Domain(s) for 2g69:
  8. Domain(s) for 2hb2:
  9. Domain(s) for 2hc0:
    1. 2060100Domain d2hc0a_: 2hc0 A: [165044]
      automated match to d1k6ca_
      complexed with ab2, br; mutant
    2. 2060101Domain d2hc0b_: 2hc0 B: [165045]
      automated match to d1k6ca_
      complexed with ab2, br; mutant
  10. Domain(s) for 2j9j:
    1. 2060094Domain d2j9ja_: 2j9j A: [165954]
      automated match to d1b6ka_
      protein/DNA complex; protein/RNA complex; complexed with act, gol, so4
    2. 2060095Domain d2j9jb_: 2j9j B: [165955]
      automated match to d1b6ka_
      protein/DNA complex; protein/RNA complex; complexed with act, gol, so4
  11. Domain(s) for 2je4:
    1. 2060096Domain d2je4a_: 2je4 A: [166142]
      automated match to d1b6ka_
      complexed with act, gol, so4
    2. 2060097Domain d2je4b_: 2je4 B: [166143]
      automated match to d1b6ka_
      complexed with act, gol, so4
  12. Domain(s) for 2p3d:
    1. 2060130Domain d2p3da_: 2p3d A: [166995]
      automated match to d1a8ga_
      complexed with 3tl; mutant
    2. 2060131Domain d2p3db_: 2p3d B: [166996]
      automated match to d1a8ga_
      complexed with 3tl; mutant
  13. Domain(s) for 2qd6:
    1. 2060098Domain d2qd6a_: 2qd6 A: [167535]
      automated match to d1fgcc_
      complexed with 065, act, cl, na; mutant
    2. 2060099Domain d2qd6b_: 2qd6 B: [167536]
      automated match to d1fgcc_
      complexed with 065, act, cl, na; mutant
  14. Domain(s) for 3zps:
    1. 2060107Domain d3zpsa_: 3zps A: [228908]
      automated match to d2wl0a_
      complexed with cl, eqm
    2. 2060108Domain d3zpsb_: 3zps B: [228911]
      automated match to d2wl0a_
      complexed with cl, eqm
  15. Domain(s) for 3zpt:
    1. 2060109Domain d3zpta_: 3zpt A: [228910]
      automated match to d2wl0a_
      complexed with cl, m8y
    2. 2060110Domain d3zptb_: 3zpt B: [228913]
      automated match to d2wl0a_
      complexed with cl, m8y
  16. Domain(s) for 3zpu:
    1. 2060121Domain d3zpua_: 3zpu A: [228909]
      automated match to d2wl0a_
      complexed with cl, m8b
    2. 2060122Domain d3zpub_: 3zpu B: [228912]
      automated match to d2wl0a_
      complexed with cl, m8b
  17. Domain(s) for 4njs:
    1. 2060113Domain d4njsa_: 4njs A: [238261]
      automated match to d1z8ca_
      complexed with g08
    2. 2060114Domain d4njsb_: 4njs B: [263147]
      automated match to d4njsa_
      complexed with g08
    3. 2060115Domain d4njsc_: 4njs C: [238262]
      automated match to d1z8ca_
      complexed with g08
    4. 2060116Domain d4njsd_: 4njs D: [263148]
      automated match to d4njsa_
      complexed with g08
  18. Domain(s) for 4nju:
    1. 2060117Domain d4njua_: 4nju A: [266931]
      automated match to d4njsa_
      complexed with tpv
    2. 2060118Domain d4njub_: 4nju B: [266932]
      automated match to d4njsa_
      complexed with tpv
    3. 2060119Domain d4njuc_: 4nju C: [266933]
      automated match to d4njsa_
      complexed with tpv
    4. 2060120Domain d4njud_: 4nju D: [266934]
      automated match to d4njsa_
      complexed with tpv
  19. Domain(s) for 4rvi:
    1. 2273770Domain d4rvid_: 4rvi D: [317071]
      automated match to d4njsa_
      complexed with g52
    2. 2273783Domain d4rvic_: 4rvi C: [317084]
      automated match to d4njsa_
      complexed with g52
    3. 2273827Domain d4rvib_: 4rvi B: [317128]
      automated match to d4njsa_
      complexed with g52
    4. 2273854Domain d4rvia_: 4rvi A: [317155]
      automated match to d4njsa_
      complexed with g52
  20. Domain(s) for 4rvj:
    1. 2273753Domain d4rvja_: 4rvj A: [317054]
      automated match to d4njsa_
      complexed with 478
    2. 2273761Domain d4rvjc_: 4rvj C: [317062]
      automated match to d4njsa_
      complexed with 478
    3. 2273776Domain d4rvjb_: 4rvj B: [317077]
      automated match to d4njsa_
      complexed with 478
    4. 2273789Domain d4rvjd_: 4rvj D: [317090]
      automated match to d4njsa_
      complexed with 478
  21. Domain(s) for 4rvx:
    1. 2273746Domain d4rvxa_: 4rvx A: [317047]
      automated match to d4njsa_
      complexed with 79g
    2. 2273758Domain d4rvxc_: 4rvx C: [317059]
      automated match to d4njsa_
      complexed with 79g
    3. 2273777Domain d4rvxb_: 4rvx B: [317078]
      automated match to d4njsa_
      complexed with 79g
    4. 2273834Domain d4rvxd_: 4rvx D: [317135]
      automated match to d4njsa_
      complexed with 79g
  22. Domain(s) for 5b18:
    1. 2271951Domain d5b18d_: 5b18 D: [315252]
      automated match to d3oqda_
      complexed with act, cl
    2. 2271964Domain d5b18b_: 5b18 B: [315265]
      automated match to d3oqda_
      complexed with act, cl
    3. 2271984Domain d5b18c_: 5b18 C: [315285]
      automated match to d3oqda_
      complexed with act, cl
    4. 2272206Domain d5b18a_: 5b18 A: [315507]
      automated match to d3oqda_
      complexed with act, cl
  23. Domain(s) for 5t2e:
  24. Domain(s) for 5t2z:
    1. 2284852Domain d5t2zb_: 5t2z B: [328153]
      automated match to d4njsa_
      complexed with 017
    2. 2284933Domain d5t2za_: 5t2z A: [328234]
      automated match to d4njsa_
      complexed with 017
  25. Domain(s) for 5v4y:

More info for Species Human immunodeficiency virus 1 [TaxId:11676] from b.50.1.1 automated matches

Timeline for Species Human immunodeficiency virus 1 [TaxId:11676] from b.50.1.1 automated matches: