Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds) |
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily) divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members |
Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families) "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain |
Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 proteins) |
Protein automated matches [190260] (25 species) not a true protein |
Species Hepatitis C virus [TaxId:11103] [187048] (44 PDB entries) |
Domain d1yuya_: 1yuy A: [162306] automated match to d1nb4a_ complexed with so4 |
Domain d1yv2a_: 1yv2 A: [162307] automated match to d1nb4a_ complexed with gol, so4 |
Domain d1yvfa_: 1yvf A: [162311] automated match to d1nb4a_ protein/RNA complex; complexed with cl, gol, ph7, po4 |
Domain d1yvxa_: 1yvx A: [162313] automated match to d1nb4a_ protein/RNA complex; complexed with ipc, so4 |
Domain d1yvza_: 1yvz A: [162314] automated match to d1nb4a_ protein/RNA complex; complexed with jpc, so4 |
Domain d1z4ua_: 1z4u A: [162385] automated match to d1nb4a_ protein/RNA complex; complexed with cl, gol, ph9, po4 |
Domain d2awza_: 2awz A: [162937] automated match to d1nb4a_ protein/RNA complex; complexed with 5h, so4 |
Domain d2awzb_: 2awz B: [162938] automated match to d1nb4a_ protein/RNA complex; complexed with 5h, so4 |
Domain d2ax0a_: 2ax0 A: [162939] automated match to d1nb4a_ protein/RNA complex; complexed with 5x, so4 |
Domain d2ax0b_: 2ax0 B: [162940] automated match to d1nb4a_ protein/RNA complex; complexed with 5x, so4 |
Domain d2ax1a_: 2ax1 A: [162941] automated match to d1nb4a_ protein/RNA complex; complexed with 5ee, so4 |
Domain d2ax1b_: 2ax1 B: [162942] automated match to d1nb4a_ protein/RNA complex; complexed with 5ee, so4 |
Domain d2d3ua_: 2d3u A: [131232] automated match to d1nb4a_ protein/RNA complex; complexed with cct |
Domain d2d3ub_: 2d3u B: [131233] automated match to d1nb4a_ protein/RNA complex; complexed with cct |
Domain d2d3za_: 2d3z A: [131234] automated match to d1nb4a_ protein/RNA complex; complexed with fih |
Domain d2d3zb_: 2d3z B: [131235] automated match to d1nb4a_ protein/RNA complex; complexed with fih |
Domain d2d41a_: 2d41 A: [131236] automated match to d1nb4a_ protein/RNA complex; complexed with snh |
Domain d2d41b_: 2d41 B: [131237] automated match to d1nb4a_ protein/RNA complex; complexed with snh |
Domain d2dxsa_: 2dxs A: [204047] automated match to d3vqsd_ protein/RNA complex; complexed with jtp |
Domain d2dxsb_: 2dxs B: [204048] automated match to d3vqsd_ protein/RNA complex; complexed with jtp |
Domain d2gc8a_: 2gc8 A: [134970] automated match to d1nb4a_ complexed with 885 |
Domain d2gc8b_: 2gc8 B: [134971] automated match to d1nb4a_ complexed with 885 |
Domain d2hwha2: 2hwh A:3-564 [136822] Other proteins in same PDB: d2hwha3, d2hwhb3 automated match to d1c2pb_ protein/RNA complex; complexed with rna |
Domain d2hwhb2: 2hwh B:3-566 [136823] Other proteins in same PDB: d2hwha3, d2hwhb3 automated match to d1c2pb_ protein/RNA complex; complexed with rna |
Domain d2hwia2: 2hwi A:3-564 [136824] Other proteins in same PDB: d2hwia3, d2hwib3 automated match to d1c2pb_ protein/RNA complex; complexed with vrx |
Domain d2hwib2: 2hwi B:3-566 [136825] Other proteins in same PDB: d2hwia3, d2hwib3 automated match to d1c2pb_ protein/RNA complex; complexed with vrx |
Domain d2i1ra2: 2i1r A:3-564 [136986] Other proteins in same PDB: d2i1ra3, d2i1rb3 automated match to d1c2pb_ protein/RNA complex; complexed with vxr |
Domain d2i1rb2: 2i1r B:3-566 [136987] Other proteins in same PDB: d2i1ra3, d2i1rb3 automated match to d1c2pb_ protein/RNA complex; complexed with vxr |
Domain d2jc0a_: 2jc0 A: [165991] automated match to d1nb4a_ complexed with 699 |
Domain d2jc0b_: 2jc0 B: [165992] automated match to d1nb4a_ complexed with 699 |
Domain d2jc1a_: 2jc1 A: [165993] automated match to d1nb4a_ complexed with 698 |
Domain d2jc1b_: 2jc1 B: [165994] automated match to d1nb4a_ complexed with 698 |
Domain d2o5da2: 2o5d A:3-564 [138918] Other proteins in same PDB: d2o5da3, d2o5db3 automated match to d1c2pb_ protein/RNA complex; complexed with vr1 |
Domain d2o5db2: 2o5d B:3-566 [138919] Other proteins in same PDB: d2o5da3, d2o5db3 automated match to d1c2pb_ protein/RNA complex; complexed with vr1 |
Domain d2xhua_: 2xhu A: [170098] automated match to d1nb4a_ complexed with so4 |
Domain d2xhub_: 2xhu B: [170099] automated match to d1nb4a_ complexed with so4 |
Domain d2xhva_: 2xhv A: [170100] automated match to d1nb4a_ complexed with mg, so4; mutant |
Domain d2xhvb_: 2xhv B: [170101] automated match to d1nb4a_ complexed with mg, so4; mutant |
Domain d2xhwa_: 2xhw A: [170102] automated match to d1nb4a_ |
Domain d2xi2a_: 2xi2 A: [170103] automated match to d1nb4a_ complexed with so4 |
Domain d2xi2b_: 2xi2 B: [170104] automated match to d1nb4a_ complexed with so4 |
Domain d2xi2c_: 2xi2 C: [170105] automated match to d1nb4a_ complexed with so4 |
Domain d2xi3a_: 2xi3 A: [170106] automated match to d1nb4a_ complexed with gtp, mg |
Domain d2xi3b_: 2xi3 B: [170107] automated match to d1nb4a_ complexed with gtp, mg |
Domain d2xwya_: 2xwy A: [207371] automated match to d4e78a_ complexed with ib8, mn |
Domain d2xxda_: 2xxd A: [170465] automated match to d1nb4a_ complexed with po4 |
Domain d3br9a_: 3br9 A: [172796] automated match to d1nb4a_ protein/RNA complex; complexed with dey |
Domain d3br9b_: 3br9 B: [172797] automated match to d1nb4a_ protein/RNA complex; complexed with dey |
Domain d3cdea_: 3cde A: [173147] automated match to d1nb4a_ protein/RNA complex; complexed with n3h |
Domain d3cdeb_: 3cde B: [173148] automated match to d1nb4a_ protein/RNA complex; complexed with n3h |
Domain d3cwja_: 3cwj A: [173515] automated match to d1nb4a_ protein/RNA complex; complexed with 321 |
Domain d3cwjb_: 3cwj B: [173516] automated match to d1nb4a_ protein/RNA complex; complexed with 321 |
Domain d3phea_: 3phe A: [183740] automated match to d1nb4a_ protein/RNA complex; complexed with c9a |
Domain d3pheb_: 3phe B: [183741] automated match to d1nb4a_ protein/RNA complex; complexed with c9a |
Domain d3phec_: 3phe C: [183742] automated match to d1nb4a_ protein/RNA complex; complexed with c9a |
Domain d3phed_: 3phe D: [183743] automated match to d1nb4a_ protein/RNA complex; complexed with c9a |
Domain d3vqsa_: 3vqs A: [194829] automated match to d3gnwb_ protein/RNA complex; complexed with cl, jt1 |
Domain d3vqsb_: 3vqs B: [194831] automated match to d3gnwb_ protein/RNA complex; complexed with cl, jt1 |
Domain d3vqsc_: 3vqs C: [194828] automated match to d3gnwb_ protein/RNA complex; complexed with cl, jt1 |
Domain d3vqsd_: 3vqs D: [194830] automated match to d3gnwb_ protein/RNA complex; complexed with cl, jt1 |
Domain d4adpa_: 4adp A: [195483] automated match to d3gnwb_ mutant |
Domain d4aepa_: 4aep A: [195480] automated match to d3gnwb_ complexed with po4 |
Domain d4aexa_: 4aex A: [195482] automated match to d3gnwb_ complexed with po4 |
Domain d4aexb_: 4aex B: [195481] automated match to d3gnwb_ complexed with po4 |
Domain d4txsa_: 4txs A: [272392] automated match to d4mz4a_ complexed with 3aq |
Domain d4txsb_: 4txs B: [272394] automated match to d4mz4a_ complexed with 3aq |
Domain d4txsc_: 4txs C: [272393] automated match to d4mz4a_ complexed with 3aq |
Domain d4txsd_: 4txs D: [272395] automated match to d4mz4a_ complexed with 3aq |
Domain d4ty8a_: 4ty8 A: [272390] automated match to d4mz4a_ complexed with 3av |
Domain d4ty8b_: 4ty8 B: [272388] automated match to d4mz4a_ complexed with 3av |
Domain d4ty8c_: 4ty8 C: [272396] automated match to d4mz4a_ complexed with 3av |
Domain d4ty8d_: 4ty8 D: [272389] automated match to d4mz4a_ complexed with 3av |
Domain d4ty9a_: 4ty9 A: [272397] automated match to d4mz4a_ complexed with 3b0 |
Domain d4ty9b_: 4ty9 B: [272401] automated match to d4mz4a_ complexed with 3b0 |
Domain d4ty9c_: 4ty9 C: [272402] automated match to d4mz4a_ complexed with 3b0 |
Domain d4ty9d_: 4ty9 D: [272403] automated match to d4mz4a_ complexed with 3b0 |
Domain d4tyaa_: 4tya A: [272391] automated match to d4mz4a_ complexed with 3ae |
Domain d4tyab_: 4tya B: [272398] automated match to d4mz4a_ complexed with 3ae |
Domain d4tyac_: 4tya C: [272400] automated match to d4mz4a_ complexed with 3ae |
Domain d4tyad_: 4tya D: [272399] automated match to d4mz4a_ complexed with 3ae |
Domain d4tyba_: 4tyb A: [272995] automated match to d3qgda_ complexed with 3b1 |
Domain d4tybb_: 4tyb B: [272997] automated match to d3qgda_ complexed with 3b1 |
Domain d4tybc_: 4tyb C: [272996] automated match to d3qgda_ complexed with 3b1 |
Domain d4tybd_: 4tyb D: [272998] automated match to d3qgda_ complexed with 3b1 |
Domain d5trha_: 5trh A: [326834] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7hl, so4 |
Domain d5trhb_: 5trh B: [326813] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7hl, so4 |
Domain d5tria_: 5tri A: [326814] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7hm, so4 |
Domain d5trib_: 5tri B: [326822] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7hm, so4 |
Domain d5trja_: 5trj A: [326765] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7ho, so4 |
Domain d5trjb_: 5trj B: [326797] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7ho, so4 |
Domain d5trka_: 5trk A: [326763] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7hh, so4 |
Domain d5trkb_: 5trk B: [326821] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7hh, so4 |
Timeline for Species Hepatitis C virus [TaxId:11103] from e.8.1.4 automated matches: