Lineage for Species: Human immunodeficiency virus 1 [TaxId: 11676]

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1372364Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 1373755Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 1374020Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)
  6. 1374128Protein automated matches [190209] (5 species)
    not a true protein
  7. 1374129Species Human immunodeficiency virus 1 [TaxId:11676] [186963] (62 PDB entries)

PDB entries in Species: Human immunodeficiency virus 1 [TaxId: 11676]:

  1. Domain(s) for 3lpt:
  2. Domain(s) for 3lpu:
  3. Domain(s) for 3nf6:
    1. 1374138Domain d3nf6a_: 3nf6 A: [233014]
      automated match to d4ah9a_
      protein/DNA complex; complexed with acy, cl, edo, imv, so4
    2. 1374139Domain d3nf6b_: 3nf6 B: [233015]
      automated match to d4ah9a_
      protein/DNA complex; complexed with acy, cl, edo, imv, so4
  4. Domain(s) for 3nf7:
    1. 1374130Domain d3nf7a_: 3nf7 A: [233017]
      automated match to d4ah9a_
      complexed with acy, ciw, edo, so4
    2. 1374131Domain d3nf7b_: 3nf7 B: [233016]
      automated match to d4ah9a_
      complexed with acy, ciw, edo, so4
  5. Domain(s) for 3nf8:
    1. 1374132Domain d3nf8a_: 3nf8 A: [233018]
      automated match to d4ah9a_
      complexed with acy, cdq, so4
    2. 1374133Domain d3nf8b_: 3nf8 B: [233019]
      automated match to d4ah9a_
      complexed with acy, cdq, so4
  6. Domain(s) for 3nf9:
    1. 1374140Domain d3nf9a_: 3nf9 A: [233020]
      automated match to d4ah9a_
      complexed with acy, cd9, edo, so4
    2. 1374141Domain d3nf9b_: 3nf9 B: [233022]
      automated match to d4ah9a_
      complexed with acy, cd9, edo, so4
  7. Domain(s) for 3nfa:
    1. 1374136Domain d3nfaa_: 3nfa A: [233021]
      automated match to d4ah9a_
      complexed with acy, cbj, so4
    2. 1374137Domain d3nfab_: 3nfa B: [233023]
      automated match to d4ah9a_
      complexed with acy, cbj, so4
  8. Domain(s) for 4ce9:
    1. 1374241Domain d4ce9a_: 4ce9 A: [229074]
      automated match to d4ah9a_
      complexed with acy, gol, o3n, so4
    2. 1374242Domain d4ce9b_: 4ce9 B: [229077]
      automated match to d4ah9a_
      complexed with acy, gol, o3n, so4
  9. Domain(s) for 4cea:
    1. 1374185Domain d4ceaa_: 4cea A: [229064]
      automated match to d4ah9a_
      complexed with acy, cl, gol, so4, zsw
    2. 1374186Domain d4ceab_: 4cea B: [229066]
      automated match to d4ah9a_
      complexed with acy, cl, gol, so4, zsw
  10. Domain(s) for 4ceb:
    1. 1374166Domain d4ceba_: 4ceb A: [229068]
      automated match to d4ah9a_
      complexed with acy, edo, gol, so4, zsv
    2. 1374167Domain d4cebb_: 4ceb B: [229069]
      automated match to d4ah9a_
      complexed with acy, edo, gol, so4, zsv
  11. Domain(s) for 4cec:
    1. 1374162Domain d4ceca_: 4cec A: [229061]
      automated match to d4ah9a_
      complexed with 2ss, act, cl, gol, so4
    2. 1374163Domain d4cecb_: 4cec B: [229063]
      automated match to d4ah9a_
      complexed with 2ss, act, cl, gol, so4
  12. Domain(s) for 4ced:
    1. 1374164Domain d4ceda_: 4ced A: [229078]
      automated match to d4ah9a_
      complexed with 9ns, cl, gol, so4
    2. 1374165Domain d4cedb_: 4ced B: [229080]
      automated match to d4ah9a_
      complexed with 9ns, cl, gol, so4
  13. Domain(s) for 4cee:
    1. 1374182Domain d4ceea_: 4cee A: [229211]
      automated match to d4ah9a_
      complexed with act, b0t, cl, so4
    2. 1374183Domain d4ceeb_: 4cee B: [229213]
      automated match to d4ah9a_
      complexed with act, b0t, cl, so4
  14. Domain(s) for 4cef:
    1. 1374146Domain d4cefa_: 4cef A: [229060]
      automated match to d4ah9a_
      complexed with cl, d0t, gol, so4
    2. 1374147Domain d4cefb_: 4cef B: [229062]
      automated match to d4ah9a_
      complexed with cl, d0t, gol, so4
  15. Domain(s) for 4ceo:
    1. 1374203Domain d4ceoa_: 4ceo A: [229072]
      automated match to d4ah9a_
      complexed with act, cl, g0t, so4
    2. 1374204Domain d4ceob_: 4ceo B: [229070]
      automated match to d4ah9a_
      complexed with act, cl, g0t, so4
  16. Domain(s) for 4ceq:
    1. 1374148Domain d4ceqa_: 4ceq A: [229065]
      automated match to d4ah9a_
      complexed with act, cl, dms, qch, so4
    2. 1374149Domain d4ceqb_: 4ceq B: [229067]
      automated match to d4ah9a_
      complexed with act, cl, dms, qch, so4
  17. Domain(s) for 4cer:
    1. 1374142Domain d4cera_: 4cer A: [229073]
      automated match to d4ah9a_
      complexed with cl, so4, vl4
    2. 1374143Domain d4cerb_: 4cer B: [229071]
      automated match to d4ah9a_
      complexed with cl, so4, vl4
  18. Domain(s) for 4ces:
    1. 1374199Domain d4cesa_: 4ces A: [229075]
      automated match to d4ah9a_
      complexed with cl, nfw, so4
    2. 1374200Domain d4cesb_: 4ces B: [229076]
      automated match to d4ah9a_
      complexed with cl, nfw, so4
  19. Domain(s) for 4cez:
    1. 1374144Domain d4ceza_: 4cez A: [229210]
      automated match to d4ah9a_
      complexed with cl, gol, o3n, so4
    2. 1374145Domain d4cezb_: 4cez B: [229212]
      automated match to d4ah9a_
      complexed with cl, gol, o3n, so4
  20. Domain(s) for 4cf0:
    1. 1374212Domain d4cf0a_: 4cf0 A: [229081]
      automated match to d4ah9a_
      complexed with act, o5u, so4
    2. 1374213Domain d4cf0b_: 4cf0 B: [229079]
      automated match to d4ah9a_
      complexed with act, o5u, so4
  21. Domain(s) for 4cf1:
    1. 1374214Domain d4cf1a_: 4cf1 A: [229792]
      automated match to d4ah9a_
      complexed with act, iy7, so4
    2. 1374215Domain d4cf1b_: 4cf1 B: [229793]
      automated match to d4ah9a_
      complexed with act, iy7, so4
  22. Domain(s) for 4cf2:
    1. 1374235Domain d4cf2a_: 4cf2 A: [229083]
      automated match to d4ah9a_
      complexed with 3gm, so4
    2. 1374236Domain d4cf2b_: 4cf2 B: [229082]
      automated match to d4ah9a_
      complexed with 3gm, so4
  23. Domain(s) for 4cf8:
    1. 1374134Domain d4cf8a_: 4cf8 A: [229570]
      automated match to d4ah9a_
      complexed with acy, cl, edo, gol, so4, v7h
    2. 1374135Domain d4cf8b_: 4cf8 B: [229568]
      automated match to d4ah9a_
      complexed with acy, cl, edo, gol, so4, v7h
  24. Domain(s) for 4cf9:
    1. 1374247Domain d4cf9a_: 4cf9 A: [229217]
      automated match to d4ah9a_
      complexed with 5ey, act, edo, ee2, so4
    2. 1374248Domain d4cf9b_: 4cf9 B: [229215]
      automated match to d4ah9a_
      complexed with 5ey, act, edo, ee2, so4
  25. Domain(s) for 4cfa:
    1. 1374237Domain d4cfaa_: 4cfa A: [229221]
      automated match to d4ah9a_
      complexed with so4, wop
    2. 1374238Domain d4cfab_: 4cfa B: [229222]
      automated match to d4ah9a_
      complexed with so4, wop
  26. Domain(s) for 4cfb:
    1. 1374226Domain d4cfba_: 4cfb A: [229214]
      automated match to d4ah9a_
      complexed with act, om3, so4
    2. 1374227Domain d4cfbb_: 4cfb B: [229216]
      automated match to d4ah9a_
      complexed with act, om3, so4
  27. Domain(s) for 4cfc:
    1. 1374216Domain d4cfca_: 4cfc A: [229223]
      automated match to d4ah9a_
      complexed with 7nv, act, cl, so4
    2. 1374217Domain d4cfcb_: 4cfc B: [229220]
      automated match to d4ah9a_
      complexed with 7nv, act, cl, so4
  28. Domain(s) for 4cfd:
    1. 1374249Domain d4cfda_: 4cfd A: [229219]
      automated match to d4ah9a_
      complexed with act, cl, s8y, so4
    2. 1374250Domain d4cfdb_: 4cfd B: [229218]
      automated match to d4ah9a_
      complexed with act, cl, s8y, so4
  29. Domain(s) for 4cgd:
    1. 1374243Domain d4cgda_: 4cgd A: [229386]
      automated match to d4ah9a_
      complexed with 8p3, acy, cl, edo, gol, so4
    2. 1374244Domain d4cgdb_: 4cgd B: [229387]
      automated match to d4ah9a_
      complexed with 8p3, acy, cl, edo, gol, so4
  30. Domain(s) for 4cgf:
    1. 1374189Domain d4cgfa_: 4cgf A: [229389]
      automated match to d4ah9a_
      complexed with act, edo, so4, uj6
    2. 1374190Domain d4cgfb_: 4cgf B: [229394]
      automated match to d4ah9a_
      complexed with act, edo, so4, uj6
  31. Domain(s) for 4cgg:
    1. 1374174Domain d4cgga_: 4cgg A: [229393]
      automated match to d4ah9a_
      complexed with cl, edo, k5q, so4
    2. 1374175Domain d4cggb_: 4cgg B: [229395]
      automated match to d4ah9a_
      complexed with cl, edo, k5q, so4
  32. Domain(s) for 4cgh:
    1. 1374191Domain d4cgha_: 4cgh A: [229391]
      automated match to d4ah9a_
      complexed with acy, loz, so4
    2. 1374192Domain d4cghb_: 4cgh B: [229392]
      automated match to d4ah9a_
      complexed with acy, loz, so4
  33. Domain(s) for 4cgi:
    1. 1374239Domain d4cgia_: 4cgi A: [229384]
      automated match to d4ah9a_
      complexed with act, nzl, so4
    2. 1374240Domain d4cgib_: 4cgi B: [229385]
      automated match to d4ah9a_
      complexed with act, nzl, so4
  34. Domain(s) for 4cgj:
    1. 1374245Domain d4cgja_: 4cgj A: [229388]
      automated match to d4ah9a_
      complexed with act, nzl, so4
    2. 1374246Domain d4cgjb_: 4cgj B: [229390]
      automated match to d4ah9a_
      complexed with act, nzl, so4
  35. Domain(s) for 4chn:
    1. 1374231Domain d4chna_: 4chn A: [229572]
      automated match to d4ah9a_
      complexed with act, edo, gol, onz, so4
    2. 1374232Domain d4chnb_: 4chn B: [229573]
      automated match to d4ah9a_
      complexed with act, edo, gol, onz, so4
  36. Domain(s) for 4cho:
    1. 1374154Domain d4choa_: 4cho A: [229575]
      automated match to d4ah9a_
      complexed with act, edo, gol, so4, u2z
    2. 1374155Domain d4chob_: 4cho B: [229577]
      automated match to d4ah9a_
      complexed with act, edo, gol, so4, u2z
  37. Domain(s) for 4chp:
    1. 1374210Domain d4chpa_: 4chp A: [229571]
      automated match to d4ah9a_
      complexed with act, edo, imv, so4
    2. 1374211Domain d4chpb_: 4chp B: [229569]
      automated match to d4ah9a_
      complexed with act, edo, imv, so4
  38. Domain(s) for 4chq:
    1. 1374224Domain d4chqa_: 4chq A: [229574]
      automated match to d4ah9a_
      complexed with act, cl, cwu, edo, so4
    2. 1374225Domain d4chqb_: 4chq B: [229576]
      automated match to d4ah9a_
      complexed with act, cl, cwu, edo, so4
  39. Domain(s) for 4chy:
    1. 1374193Domain d4chya_: 4chy A: [229800]
      automated match to d4ah9a_
      complexed with acy, c5q, edo, so4
    2. 1374194Domain d4chyb_: 4chy B: [229803]
      automated match to d4ah9a_
      complexed with acy, c5q, edo, so4
  40. Domain(s) for 4chz:
    1. 1374195Domain d4chza_: 4chz A: [229798]
      automated match to d4ah9a_
      complexed with act, cl, edo, h75, lys, so4
    2. 1374196Domain d4chzb_: 4chz B: [229994]
      automated match to d4ah9a_
      complexed with act, cl, edo, h75, lys, so4
  41. Domain(s) for 4cie:
    1. 1374152Domain d4ciea_: 4cie A: [235938]
      automated match to d4ah9a_
      complexed with acy, cl, so4, y7n
    2. 1374153Domain d4cieb_: 4cie B: [235936]
      automated match to d4ah9a_
      complexed with acy, cl, so4, y7n
  42. Domain(s) for 4cif:
    1. 1374180Domain d4cifa_: 4cif A: [235933]
      automated match to d4ah9a_
      complexed with act, cl, jdx, so4
    2. 1374181Domain d4cifb_: 4cif B: [235934]
      automated match to d4ah9a_
      complexed with act, cl, jdx, so4
  43. Domain(s) for 4cig:
    1. 1374150Domain d4ciga_: 4cig A: [235935]
      automated match to d4ah9a_
      complexed with act, so4, x0p
    2. 1374151Domain d4cigb_: 4cig B: [235937]
      automated match to d4ah9a_
      complexed with act, so4, x0p
  44. Domain(s) for 4cj3:
    1. 1374170Domain d4cj3a_: 4cj3 A: [235944]
      automated match to d4ah9a_
      complexed with act, e4f, so4
    2. 1374171Domain d4cj3b_: 4cj3 B: [235947]
      automated match to d4ah9a_
      complexed with act, e4f, so4
  45. Domain(s) for 4cj4:
    1. 1374201Domain d4cj4a_: 4cj4 A: [235957]
      automated match to d4ah9a_
      complexed with act, cl, s3g, so4
    2. 1374202Domain d4cj4b_: 4cj4 B: [235955]
      automated match to d4ah9a_
      complexed with act, cl, s3g, so4
  46. Domain(s) for 4cj5:
    1. 1374222Domain d4cj5a_: 4cj5 A: [235961]
      automated match to d4ah9a_
      complexed with 4vw, act, cl, so4
    2. 1374223Domain d4cj5b_: 4cj5 B: [235960]
      automated match to d4ah9a_
      complexed with 4vw, act, cl, so4
  47. Domain(s) for 4cje:
    1. 1374206Domain d4cjea_: 4cje A: [235956]
      automated match to d4ah9a_
      complexed with act, cl, q31, so4
    2. 1374207Domain d4cjeb_: 4cje B: [235958]
      automated match to d4ah9a_
      complexed with act, cl, q31, so4
  48. Domain(s) for 4cjf:
    1. 1374218Domain d4cjfa_: 4cjf A: [235939]
      automated match to d4ah9a_
      complexed with act, cl, dms, edo, rvn, so4
    2. 1374219Domain d4cjfb_: 4cjf B: [235941]
      automated match to d4ah9a_
      complexed with act, cl, dms, edo, rvn, so4
  49. Domain(s) for 4cjk:
    1. 1374172Domain d4cjka_: 4cjk A: [235952]
      automated match to d4ah9a_
      complexed with act, cl, h39, so4
    2. 1374173Domain d4cjkb_: 4cjk B: [235959]
      automated match to d4ah9a_
      complexed with act, cl, h39, so4
  50. Domain(s) for 4cjl:
  51. Domain(s) for 4cjp:
    1. 1374228Domain d4cjpa_: 4cjp A: [235951]
      automated match to d4ah9a_
      complexed with 4d2, cl, so4
    2. 1374229Domain d4cjpb_: 4cjp B: [235954]
      automated match to d4ah9a_
      complexed with 4d2, cl, so4
  52. Domain(s) for 4cjq:
    1. 1374160Domain d4cjqa_: 4cjq A: [235953]
      automated match to d4ah9a_
      complexed with act, so4, vxo
    2. 1374161Domain d4cjqb_: 4cjq B: [235950]
      automated match to d4ah9a_
      complexed with act, so4, vxo
  53. Domain(s) for 4cjr:
    1. 1374187Domain d4cjra_: 4cjr A: [235948]
      automated match to d4ah9a_
      complexed with act, cl, fym, so4
    2. 1374188Domain d4cjrb_: 4cjr B: [235949]
      automated match to d4ah9a_
      complexed with act, cl, fym, so4
  54. Domain(s) for 4cjs:
    1. 1374176Domain d4cjsa_: 4cjs A: [235940]
      automated match to d4ah9a_
      complexed with act, cl, l0y, so4
    2. 1374177Domain d4cjsb_: 4cjs B: [235943]
      automated match to d4ah9a_
      complexed with act, cl, l0y, so4
  55. Domain(s) for 4cjt:
    1. 1374158Domain d4cjta_: 4cjt A: [235942]
      automated match to d4ah9a_
      complexed with act, gol, hlr, so4
    2. 1374159Domain d4cjtb_: 4cjt B: [235945]
      automated match to d4ah9a_
      complexed with act, gol, hlr, so4
  56. Domain(s) for 4cju:
    1. 1374156Domain d4cjua_: 4cju A: [236124]
      automated match to d4ah9a_
      complexed with act, jns, so4
    2. 1374157Domain d4cjub_: 4cju B: [236121]
      automated match to d4ah9a_
      complexed with act, jns, so4
  57. Domain(s) for 4cjv:
    1. 1374233Domain d4cjva_: 4cjv A: [236125]
      automated match to d4ah9a_
      complexed with act, gol, iv2, so4
    2. 1374234Domain d4cjvb_: 4cjv B: [236126]
      automated match to d4ah9a_
      complexed with act, gol, iv2, so4
  58. Domain(s) for 4cjw:
    1. 1374220Domain d4cjwa_: 4cjw A: [236123]
      automated match to d4ah9a_
      complexed with act, cbj, so4
    2. 1374221Domain d4cjwb_: 4cjw B: [236122]
      automated match to d4ah9a_
      complexed with act, cbj, so4
  59. Domain(s) for 4ck1:
    1. 1374168Domain d4ck1a_: 4ck1 A: [236127]
      automated match to d4ah9a_
      complexed with act, cl, edo, om1, so4
    2. 1374169Domain d4ck1b_: 4ck1 B: [236128]
      automated match to d4ah9a_
      complexed with act, cl, edo, om1, so4
  60. Domain(s) for 4ck2:
    1. 1374208Domain d4ck2a_: 4ck2 A: [236118]
      automated match to d4ah9a_
      complexed with act, nvu, so4
    2. 1374209Domain d4ck2b_: 4ck2 B: [236117]
      automated match to d4ah9a_
      complexed with act, nvu, so4
  61. Domain(s) for 4ck3:
    1. 1374197Domain d4ck3a_: 4ck3 A: [236120]
      automated match to d4ah9a_
      complexed with act, k1t, so4
    2. 1374198Domain d4ck3b_: 4ck3 B: [236119]
      automated match to d4ah9a_
      complexed with act, k1t, so4
  62. Domain(s) for 4ovl:
    1. 1374178Domain d4ovla_: 4ovl A: [237439]
      automated match to d4ah9a_
      complexed with 1td, acy, edo, gol, so4
    2. 1374179Domain d4ovlb_: 4ovl B: [237438]
      automated match to d4ah9a_
      complexed with 1td, acy, edo, gol, so4

More info for Species Human immunodeficiency virus 1 [TaxId:11676] from c.55.3.2 automated matches

Timeline for Species Human immunodeficiency virus 1 [TaxId:11676] from c.55.3.2 automated matches: