SCOPe 2.03: Domain d3ubqe_: 3ubq E:

Lineage for d3ubqe_ (3ubq E:)

1. Root: SCOPe 2.03

2. Class b: All beta proteins [48724] (174 folds)

3. Fold b.19: Viral protein domain [49817] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll; form trimers

4. Superfamily b.19.1: Viral protein domain [49818] (4 families)
   forms homotrimers

5. Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)

6. Protein Hemagglutinin [49824] (6 species)
   includes rudiment esterase domain

7. Species Influenza A virus, different strains [TaxId:11320] [49825] (86 PDB entries)

8. Domain d3ubqe_: 3ubq E: [186218]
   automated match to d1ruyh_
   complexed with nag

Details for d3ubqe_

PDB Entry: 3ubq, 2 Å

PDB Description: influenza hemagglutinin from the 2009 pandemic in complex with ligand 3sln

PDB Compounds: (E:) hemagglutinin HA1

SCOPe Domain Sequences for d3ubqe_:

Sequence, based on SEQRES records:

>d3ubqe_ b.19.1.2 (E:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
pgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcnia
gwilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifp
ktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwg
ihhpstsadqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgd
kitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpi
tigkcpkyvkstklrlatglrnips

Sequence, based on observed residues (ATOM records):

>d3ubqe_ b.19.1.2 (E:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
pgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcnia
gwilgnpectasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpktss
wpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgihhp
stsadqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdkitf
eatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpitigk
cpkyvkstklrlatglrnips

Timeline for d3ubqe_:

• d3ubqe_ first appeared in SCOPe 2.01
  
• d3ubqe_ appears in SCOPe 2.02
  
• d3ubqe_ appears in SCOPe 2.04
  
• d3ubqe_ appears in the current release, SCOPe 2.07, called d3ubqe1