Lineage for d3ubqe1 (3ubq E:11-325)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2040266Fold b.19: Viral protein domain [49817] (1 superfamily)
    sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
  4. 2040267Superfamily b.19.1: Viral protein domain [49818] (4 families) (S)
    forms homotrimers
  5. 2040314Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 protein domains)
  6. 2040315Protein Hemagglutinin [49824] (9 species)
    includes rudiment esterase domain
  7. 2040355Species Influenza A virus, different strains [TaxId:11320] [49825] (116 PDB entries)
  8. 2040374Domain d3ubqe1: 3ubq E:11-325 [186218]
    Other proteins in same PDB: d3ubqb_, d3ubqd_, d3ubqe2, d3ubqf_, d3ubqh_, d3ubqj_, d3ubql_
    automated match to d1ruyh_
    complexed with nag

Details for d3ubqe1

PDB Entry: 3ubq (more details), 2 Å

PDB Description: influenza hemagglutinin from the 2009 pandemic in complex with ligand 3sln
PDB Compounds: (E:) hemagglutinin HA1

SCOPe Domain Sequences for d3ubqe1:

Sequence, based on SEQRES records: (download)

>d3ubqe1 b.19.1.2 (E:11-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpkt
sswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgih
hpstsadqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdki
tfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpiti
gkcpkyvkstklrlatglrnips

Sequence, based on observed residues (ATOM records): (download)

>d3ubqe1 b.19.1.2 (E:11-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpectasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpktsswp
nhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgihhpst
sadqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdkitfea
tgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpitigkcp
kyvkstklrlatglrnips

SCOPe Domain Coordinates for d3ubqe1:

Click to download the PDB-style file with coordinates for d3ubqe1.
(The format of our PDB-style files is described here.)

Timeline for d3ubqe1: