SCOPe 2.08: Domain d3ubnc_: 3ubn C:

Lineage for d3ubnc_ (3ubn C:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.19: Viral protein domain [49817] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll; form trimers

4. Superfamily b.19.1: Viral protein domain [49818] (4 families)
   forms homotrimers

5. Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)

6. Protein Hemagglutinin [49824] (22 species)
   includes rudiment esterase domain

7. Species Influenza A virus, different strains [TaxId:11320] [49825] (131 PDB entries)

8. Domain d3ubnc_: 3ubn C: [186211]
   Other proteins in same PDB: d3ubnb_, d3ubnd_, d3ubnf_, d3ubnh_, d3ubnj_, d3ubnk2, d3ubnl_
   automated match to d1ruyh_
   complexed with nag

Details for d3ubnc_

PDB Entry: 3ubn, 2.51 Å

PDB Description: influenza hemagglutinin from the 2009 pandemic in complex with ligand 6sln

PDB Compounds: (C:) hemagglutinin HA1

SCOPe Domain Sequences for d3ubnc_:

Sequence, based on SEQRES records:

>d3ubnc_ b.19.1.2 (C:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpkt
sswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgih
hpstsadqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdki
tfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpiti
gkcpkyvkstklrlatglrnip

Sequence, based on observed residues (ATOM records):

>d3ubnc_ b.19.1.2 (C:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpecesasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpktssw
pnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgihhps
tsadqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdkitfe
atgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpitigkc
pkyvkstklrlatglrnip

Timeline for d3ubnc_:

• d3ubnc_ first appeared in SCOPe 2.01
  
• d3ubnc_ appears in SCOPe 2.07