SCOPe 2.08: Domain d3ubje1: 3ubj E:11-325

Lineage for d3ubje1 (3ubj E:11-325)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.19: Viral protein domain [49817] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll; form trimers

4. Superfamily b.19.1: Viral protein domain [49818] (4 families)
   forms homotrimers

5. Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)

6. Protein Hemagglutinin [49824] (22 species)
   includes rudiment esterase domain

7. Species Influenza A virus, different strains [TaxId:11320] [49825] (131 PDB entries)

8. Domain d3ubje1: 3ubj E:11-325 [186206]
   Other proteins in same PDB: d3ubjb_, d3ubjd_, d3ubje2, d3ubjf_, d3ubjh_, d3ubjj_, d3ubjl_
   automated match to d1ruyh_
   complexed with nag

Details for d3ubje1

PDB Entry: 3ubj, 2.25 Å

PDB Description: influenza hemagglutinin from the 2009 pandemic in complex with ligand lsta

PDB Compounds: (E:) hemagglutinin HA1

SCOPe Domain Sequences for d3ubje1:

Sequence, based on SEQRES records:

>d3ubje1 b.19.1.2 (E:11-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpkt
sswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgih
hpstsadqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdki
tfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpiti
gkcpkyvkstklrlatglrnips

Sequence, based on observed residues (ATOM records):

>d3ubje1 b.19.1.2 (E:11-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpecsswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpktsswpnh
dsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgihhpstsa
dqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdkitfeatg
nlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpitigkcpky
vkstklrlatglrnips

Timeline for d3ubje1:

• d3ubje1 first appeared in SCOPe 2.01, called d3ubje_
  
• d3ubje1 appears in SCOPe 2.07