Lineage for d3sy0a1 (3sy0 A:1-107)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2018294Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2018687Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] [88525] (51 PDB entries)
  8. 2018690Domain d3sy0a1: 3sy0 A:1-107 [185581]
    Other proteins in same PDB: d3sy0a2, d3sy0b1, d3sy0b2
    part of Fab s25-2
    complexed with mg, zn

Details for d3sy0a1

PDB Entry: 3sy0 (more details), 1.49 Å

PDB Description: S25-2- A(2-8)-A(2-4)KDO trisaccharide complex
PDB Compounds: (A:) S25-2 Fab (IgG1k) light chain

SCOPe Domain Sequences for d3sy0a1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3sy0a1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

SCOPe Domain Coordinates for d3sy0a1:

Click to download the PDB-style file with coordinates for d3sy0a1.
(The format of our PDB-style files is described here.)

Timeline for d3sy0a1:

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