SCOPe 2.04: Domain d3rufs_: 3ruf S:

Lineage for d3rufs_ (3ruf S:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.2: Tyrosine-dependent oxidoreductases [51751] (71 proteins)
   also known as short-chain dehydrogenases and SDR family
   parallel beta-sheet is extended by 7th strand, order 3214567; left-handed crossover connection between strands 6 and 7

6. Protein automated matches [190085] (43 species)
   not a true protein

7. Species Plesiomonas shigelloides [TaxId:703] [189972] (9 PDB entries)

8. Domain d3rufs_: 3ruf S: [185184]
   automated match to d1sb8a_
   complexed with nad, so4, udp

Details for d3rufs_

PDB Entry: 3ruf, 2 Å

PDB Description: Alternative analogs as viable substrates of UDP-hexose 4-epimerases

PDB Compounds: (S:) WbgU

SCOPe Domain Sequences for d3rufs_:

Sequence, based on SEQRES records:

>d3rufs_ c.2.1.2 (S:) automated matches {Plesiomonas shigelloides [TaxId: 703]}
ymsryeeitqqlifspktwlitgvagfigsnllekllklnqvvigldnfstghqynldev
ktlvsteqwsrfcfiegdirdlttceqvmkgvdhvlhqaalgsvprsivdpittnatnit
gflnilhaaknaqvqsftyaassstygdhpalpkveenignplspyavtkyvneiyaqvy
artygfktiglryfnvfgrrqdpngayaavipkwtaamlkgddvyingdgetsrdfcyid
nviqmnilsalakdsakdniynvavgdrttlnelsgyiydelnlihhidklsikyrefrs
gdvrhsqadvtkaidllkyrpnikireglrlsmpwyvrflk

Sequence, based on observed residues (ATOM records):

>d3rufs_ c.2.1.2 (S:) automated matches {Plesiomonas shigelloides [TaxId: 703]}
ymsryeeitqqlifspktwlitgvagfigsnllekllklnqvvigldnfstghqynldev
ktlvsteqwsrfcfiegdirdlttceqvmkgvdhvlhqaalgsvprsivdpittnatnit
gflnilhaaknaqvqsftyaassstygdhpalpkveenignplspyavtkyvneiyaqvy
artygfktiglryfnvfgrrqdpngayaavipkwtaamlkgddvyingdgetsrdfcyid
nviqmnilsalakdsakdniynvavgdrttlnelsgyiydelnlihhikyrefrsgdvrh
sqadvtkaidllkyrpnikireglrlsmpwyvrflk

Timeline for d3rufs_:

• d3rufs_ first appeared in SCOPe 2.01
  
• d3rufs_ appears in SCOPe 2.03
  
• d3rufs_ appears in SCOPe 2.05
  
• d3rufs_ appears in the current release, SCOPe 2.08