SCOPe 2.07: Domain d3ru7a1: 3ru7 A:1-340

Lineage for d3ru7a1 (3ru7 A:1-340)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.2: Tyrosine-dependent oxidoreductases [51751] (71 proteins)
   also known as short-chain dehydrogenases and SDR family
   parallel beta-sheet is extended by 7th strand, order 3214567; left-handed crossover connection between strands 6 and 7

6. Protein automated matches [190085] (58 species)
   not a true protein

7. Species Plesiomonas shigelloides [TaxId:703] [189972] (9 PDB entries)

8. Domain d3ru7a1: 3ru7 A:1-340 [185158]
   Other proteins in same PDB: d3ru7a2, d3ru7b2, d3ru7c2, d3ru7d2
   automated match to d1sb8a_
   complexed with gly, na, nad, so4, unl

Details for d3ru7a1

PDB Entry: 3ru7, 2.6 Å

PDB Description: specific recognition of n-acetylated substrates and domain flexibility in wbgu: a udp-galnac 4-epimerase

PDB Compounds: (A:) WbgU

SCOPe Domain Sequences for d3ru7a1:

Sequence, based on SEQRES records:

>d3ru7a1 c.2.1.2 (A:1-340) automated matches {Plesiomonas shigelloides [TaxId: 703]}
ymsryeeitqqlifspktwlitgvagfigsnllekllklnqvvigldnfstghqynldev
ktlvsteqwsrfcfiegdirdlttceqvmkgvdhvlhqaalgsvprsivdpittnatnit
gflnilhaaknaqvqsftyaassstygdhpalpkveenignplspyavtkyvneiyaqvy
artygfktiglryfnvfgrrqdpngayaavipkwtaamlkgddvyingdgetsrdfcyid
nviqmnilsalakdsakdniynvavgdrttlnelsgyiydelnlihhidklsikyrefrs
gdvrhsqadvtkaidllkyrpnikireglrlsmpwyvrfl

Sequence, based on observed residues (ATOM records):

>d3ru7a1 c.2.1.2 (A:1-340) automated matches {Plesiomonas shigelloides [TaxId: 703]}
ymsryeeitqqlifspktwlitgvagfigsnllekllklnqvvigldnfstghqynldev
ktlvsteqwsrfcfiegdirdlttceqvmkgvdhvlhqaalgsvprsivdpittnatnit
gflnilhaaknaqvqsftyaassstygdhpalpkveenignplspyavtkyvneiyaqvy
artygfktiglryfnvfgrrqdpngayaavipkwtaamlkgddvyingdgetsrdfcyid
nviqmnilsalakdsakdniynvavgdrttlnelsgyiydelnlihhikyrefrsgdvrh
sqadvtkaidllkyrpnikireglrlsmpwyvrfl

Timeline for d3ru7a1:

• d3ru7a1 first appeared in SCOPe 2.01, called d3ru7a_
  
• d3ru7a1 appears in SCOPe 2.06
  
• d3ru7a1 appears in the current release, SCOPe 2.08