SCOPe 2.08: Domain d3rk0a1: 3rk0 A:4-229

Lineage for d3rk0a1 (3rk0 A:4-229)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
   core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145

4. Superfamily c.26.2: Adenine nucleotide alpha hydrolases-like [52402] (7 families)
   share similar mode of ligand (Adenosine group) binding
   can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group

5. Family c.26.2.1: N-type ATP pyrophosphatases [52403] (9 proteins)

6. Protein Putative N-type ATP pyrophosphatase PF0828 [102264] (1 species)

7. Species Pyrococcus furiosus [TaxId:2261] [102265] (5 PDB entries)

8. Domain d3rk0a1: 3rk0 A:4-229 [184998]
   Other proteins in same PDB: d3rk0a2
   automated match to d1ru8a_
   complexed with amp
   has additional subdomain(s) that are not in the common domain

Details for d3rk0a1

PDB Entry: 3rk0, 2.4 Å

PDB Description: X-ray crystal Structure of the putative N-type ATP pyrophosphatase (PF0828) in complex with AMP from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR23

PDB Compounds: (A:) N-type ATP pyrophosphatase superfamily

SCOPe Domain Sequences for d3rk0a1:

Sequence, based on SEQRES records:

>d3rk0a1 c.26.2.1 (A:4-229) Putative N-type ATP pyrophosphatase PF0828 {Pyrococcus furiosus [TaxId: 2261]}
ladvavlysggkdsnyalywaiknrfsvkflvtmvseneesymyhtinanltdlqaralg
iplvkgftqgekekevedlkrvlsglkiqgivagalaskyqrkriekvakelglevytpa
wgrdakeymrellnlgfkimvvgvsaygldeswlgrildesaleelitlnekykvhvage
ggefetfvldmplfkykivvdkakkvwepctssgkliieeahlesk

Sequence, based on observed residues (ATOM records):

>d3rk0a1 c.26.2.1 (A:4-229) Putative N-type ATP pyrophosphatase PF0828 {Pyrococcus furiosus [TaxId: 2261]}
ladvavlysggkdsnyalywaiknrfsvkflvtmvsenemyhtinanltdlqaralgipl
vkgftkevedlkrvlsglkiqgivagalaskyqrkriekvakelglevytpardakeymr
ellnlgfkimvvgvsaygldeswlgrildesaleelitlnekykvhvageggefetfvld
mplfkykivvdkakkvtssgkliieeahlesk

Timeline for d3rk0a1:

• d3rk0a1 first appeared in SCOPe 2.01, called d3rk0a_
  
• d3rk0a1 appears in SCOPe 2.07