SCOPe 2.01: Domain d3qima_: 3qim A:

Lineage for d3qima_ (3qim A:)

1. Root: SCOPe 2.01

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.1: Phosphate binding protein-like [53851] (41 proteins)

6. Protein Nickel-binding periplasmic protein NikA [102694] (1 species)
   similar domain organization to oligo- and dipeptide-binding protein

7. Species Escherichia coli [TaxId:562] [102695] (14 PDB entries)

8. Domain d3qima_: 3qim A: [184405]
   automated match to d1zlqa1
   complexed with act, gol, so4

Details for d3qima_

PDB Entry: 3qim, 2.1 Å

PDB Description: Histidine 416 of the periplamsic binding protein NikA is essential for nickel uptake in Escherichia coli

PDB Compounds: (A:) Nickel-binding periplasmic protein

SCOPe Domain Sequences for d3qima_:

Sequence; same for both SEQRES and ATOM records:

>d3qima_ c.94.1.1 (A:) Nickel-binding periplasmic protein NikA {Escherichia coli [TaxId: 562]}
apdeittawpvnvgplnphlytpnqmfaqsmvyeplvkyqadgsvipwlakswthsedgk
twtftlrddvkfsngepfdaeaaaenfravldnrqrhawlelanqivdvkalsktelqit
lksayypflqelalprpfrfiapsqfknhetmngikapigtgpwilqesklnqydvfvrn
enywgekpaikkitfnvipdpttravafetgdidllygnegllpldtfarfsqnpayhtq
lsqpietvmlalntakaptnelavrealnyavnkkslidnalygtqqvadtlfapsvpya
nlglkpsqydpqkakallekagwtlpagkdirekngqplrielsfigtdalsksmaeiiq
admrqigadvsligeeessiyarqrdgrfgmifhrtwgapydphaflssmrvpsiadfqa
qqgladkplidkeigevlathdetqrqalyrdiltrlhdeavylpisyismmvvskpelg
nipyapiateipfeqikp

Timeline for d3qima_:

• d3qima_ is new in SCOPe 2.01-stable
  
• d3qima_ appears in SCOPe 2.02
  
• d3qima_ appears in the current release, SCOPe 2.08