SCOPe 2.05: Domain d3pgyd_: 3pgy D:

Lineage for d3pgyd_ (3pgy D:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.4: GABA-aminotransferase-like [53417] (17 proteins)
   formerly omega-Aminoacid:pyruvate aminotransferase-like

6. Protein automated matches [190152] (18 species)
   not a true protein

7. Species Staphylococcus aureus [TaxId:93062] [189536] (1 PDB entry)

8. Domain d3pgyd_: 3pgy D: [183730]
   automated match to d1kkja_
   complexed with cit, edo, gly; mutant

Details for d3pgyd_

PDB Entry: 3pgy, 1.92 Å

PDB Description: serine hydroxymethyltransferase from staphylococcus aureus, s95p mutant.

PDB Compounds: (D:) serine hydroxymethyltransferase

SCOPe Domain Sequences for d3pgyd_:

Sequence, based on SEQRES records:

>d3pgyd_ c.67.1.4 (D:) automated matches {Staphylococcus aureus [TaxId: 93062]}
namsyitkqdkviaeaierefqrqnsnieliasenfvseavmeaqgsvltnkyaegypgr
ryyggcefvdvtesiaidrakalfgaehvnvqphsgpqanmavylvalemgdtvlgmnls
hgghlthgapvnfsgkfynfveygvdkdterinydevrklalehkpklivagasaysrti
dfkkfkeiadevnaklmvdmahiaglvaaglhpnpveyadfvtttthktlrgprggmilc
keeykkdidktifpgiqggplehviaakavafgealennfktyqqqvvknakvlaealin
egfrivsggtdnhlvavdvkgsigltgkeaeetldsvgitcnkntipfdqekpfvtsgir
lgtpaattrgfdekafeevakiislalknskdeeklqqakervakltaeyply

Sequence, based on observed residues (ATOM records):

>d3pgyd_ c.67.1.4 (D:) automated matches {Staphylococcus aureus [TaxId: 93062]}
namsyitkqdkviaeaierefqrqnsnieliasenfvseavmeaqgsvltnkyaegypgr
ryyggcefvdvtesiaidrakalfgaehvnvqphsgpqanmavylvalemgdtvlgmnpv
nfsgkfynfveygvdkdterinydevrklalehkpklivagasaysrtidfkkfkeiade
vnaklmvdmahiaglvaaglhpnpveyadfvtttthktlrgprggmilckeeykkdidkt
ifpgiqggplehviaakavafgealennfktyqqqvvknakvlaealinegfrivsggtd
nhlvavdvkgsigltgkeaeetldsvgitcnkntipfdqekpfvtsgirlgtpaattrgf
dekafeevakiislalknskdeeklqqakervakltaeyply

Timeline for d3pgyd_:

• d3pgyd_ first appeared in SCOPe 2.01
  
• d3pgyd_ appears in SCOPe 2.04
  
• d3pgyd_ is called d3pgyd1 in SCOPe 2.06
  
• d3pgyd_ appears in the current release, SCOPe 2.08, called d3pgyd1