Lineage for d3myrd_ (3myr D:)

  1. Root: SCOPe 2.03
  2. 1449807Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
  3. 1453554Fold e.18: HydB/Nqo4-like [56761] (1 superfamily)
    3 domains: (1) all-alpha; (2&3) alpha+beta
  4. 1453555Superfamily e.18.1: HydB/Nqo4-like [56762] (3 families) (S)
  5. 1453642Family e.18.1.0: automated matches [191637] (1 protein)
    not a true family
  6. 1453643Protein automated matches [191173] (4 species)
    not a true protein
  7. 1453644Species Allochromatium vinosum [TaxId:1049] [189416] (1 PDB entry)
  8. 1453646Domain d3myrd_: 3myr D: [181708]
    Other proteins in same PDB: d3myra_, d3myrc_, d3myre_, d3myrg_
    automated match to d1frfl_
    complexed with cl, f3s, imd, mg, nfv, sf4

Details for d3myrd_

PDB Entry: 3myr (more details), 2.1 Å

PDB Description: crystal structure of [nife] hydrogenase from allochromatium vinosum in its ni-a state
PDB Compounds: (D:) Nickel-dependent hydrogenase large subunit

SCOPe Domain Sequences for d3myrd_:

Sequence; same for both SEQRES and ATOM records: (download)

>d3myrd_ e.18.1.0 (D:) automated matches {Allochromatium vinosum [TaxId: 1049]}
mserivvdpitrieghlrieaqmdgatiaqayssgtmvrgietilkgrdprdawafvqri
cgvctlvhgiasvravedalrielplnaqlirnlmigaqyihdhvmhfyhlhaldwvdvv
salsadpratselaqsisawpksspgyfadtqkriktfvesgqlgifangywghpayrlp
peanlmavahylealawqrdtakfhaifggknphpnfvvggvpspidldsdsalnakrla
evrnliqsmrtfvdqvyvpdtlaiagfykdwgergeglgnflcygdlptgasldpatflf
prgaildrdlstihevdleatgeiqefvnhswyeysvgndrglhpyegqtnleydrrggv
appykqldvsdgyswlkaprwkgrsvevgplarvlmlyatghdqarelvdstlsrldlpv
dalystlgrtaaraleskilvdamqgwydglianvksgdtktfnetlwepsswpsraqgv
gimeaprgalghwiviedgrianyqavvpstwnagprdgrgqagayeaalqdnhqlvdvk
qpieilrtihsfdpciacavh

SCOPe Domain Coordinates for d3myrd_:

Click to download the PDB-style file with coordinates for d3myrd_.
(The format of our PDB-style files is described here.)

Timeline for d3myrd_: