SCOPe 2.02: Domain d3mknd_: 3mkn D:

Lineage for d3mknd_ (3mkn D:)

1. Root: SCOPe 2.02

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.70: Nucleoside hydrolase [53589] (1 superfamily)
   core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest

4. Superfamily c.70.1: Nucleoside hydrolase [53590] (2 families)

5. Family c.70.1.1: Nucleoside hydrolase [53591] (5 proteins)

6. Protein Pyrimidine nucleoside hydrolase YeiK [102633] (1 species)

7. Species Escherichia coli [TaxId:562] [102634] (4 PDB entries)

8. Domain d3mknd_: 3mkn D: [181357]
   automated match to d1q8fa_
   complexed with ca, dnb

Details for d3mknd_

PDB Entry: 3mkn, 2 Å

PDB Description: Crystal structure of the E. coli pyrimidine nucleosidase YeiK bound to a competitive inhibitor

PDB Compounds: (D:) Putative uncharacterized protein YeiK

SCOPe Domain Sequences for d3mknd_:

Sequence, based on SEQRES records:

>d3mknd_ c.70.1.1 (D:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]}
krkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinvp
vyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgditlv
pvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgv
plvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhdat
cigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglv
eecvrgyik

Sequence, based on observed residues (ATOM records):

>d3mknd_ c.70.1.1 (D:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]}
krkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinvp
vyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgditlv
pvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgv
plvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfegpvhdatcigyli
npdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglveecvrg
yik

Timeline for d3mknd_:

• d3mknd_ first appeared in SCOPe 2.01
  
• d3mknd_ appears in SCOPe 2.03
  
• d3mknd_ appears in the current release, SCOPe 2.08